Chromosomal organizations of major repeat families on potato (Solanum tuberosum) and further exploring in its sequenced genome View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2014-12

AUTHORS

Xiaomin Tang, Erwin Datema, Myriam Olortegui Guzman, Jan M. de Boer, Herman J. van Eck, Christian W. B. Bachem, Richard G. F. Visser, Hans de Jong

ABSTRACT

One of the most powerful technologies in unraveling the organization of a eukaryotic plant genome is high-resolution Fluorescent in situ hybridization of repeats and single copy DNA sequences on pachytene chromosomes. This technology allows the integration of physical mapping information with chromosomal positions, including centromeres, telomeres, nucleolar-organizing region, and euchromatin and heterochromatin. In this report, we established chromosomal positions of different repeat fractions of the potato genomic DNA (Cot100, Cot500 and Cot1000) on the chromosomes. We also analysed various repeat elements that are unique to potato including the moderately repetitive P5 and REP2 elements, where the REP2 is part of a larger Gypsy-type LTR retrotransposon and cover most chromosome regions, with some brighter fluorescing spots in the heterochromatin. The most abundant tandem repeat is the potato genomic repeat 1 that covers subtelomeric regions of most chromosome arms. Extensive multiple alignments of these repetitive sequences in the assembled RH89-039-16 potato BACs and the draft assembly of the DM1-3 516 R44 genome shed light on the conservation of these repeats within the potato genome. The consensus sequences thus obtained revealed the native complete transposable elements from which they were derived. More... »

PAGES

1307-1319

References to SciGraph publications

  • 2001-02. Chromosomal distribution of reverse transcriptase-containing retroelements in two Triticeae species in CHROMOSOME RESEARCH
  • 1997-01. Comparative analysis of the chromosomal and genomic organization of Ty1-copia-like retrotransposons in pteridophytes, gymnosperms and angiosperms in PLANT MOLECULAR BIOLOGY
  • 1989-07. A BamHI family of highly repeated DNA sequences of Nicotiana tabacum in THEORETICAL AND APPLIED GENETICS
  • 2009-10. Assignment of genetic linkage maps to diploid Solanum tuberosum pachytene chromosomes by BAC-FISH technology in CHROMOSOME RESEARCH
  • 2012-05. The tomato genome sequence provides insights into fleshy fruit evolution in NATURE
  • 2007-12. A unified classification system for eukaryotic transposable elements in NATURE REVIEWS GENETICS
  • 2009-11. Sequencing the Potato Genome: Outline and First Results to Come from the Elucidation of the Sequence of the World’s Third Most Important Food Crop in AMERICAN JOURNAL OF POTATO RESEARCH
  • 2008-12. Comparative BAC end sequence analysis of tomato and potato reveals overrepresentation of specific gene families in potato in BMC PLANT BIOLOGY
  • 2000-12. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana in NATURE
  • 1993-02. Molecular analysis of highly repeated genome fractions in Solanum and their use as markers for the characterization of species and cultivars in THEORETICAL AND APPLIED GENETICS
  • 2004-07. Role of transposable elements in heterochromatin and epigenetic control in NATURE
  • 1988-08. A molecular and cytogenetic survey of major repeated DNA sequences in tomato (Lycopersicon esculentum) in MOLECULAR GENETICS AND GENOMICS
  • 2008-10. FISH mapping and molecular organization of the major repetitive sequences of tomato in CHROMOSOME RESEARCH
  • 1997-07. Use of allele specificity of comigrating AFLP markers to align genetic maps from different potato genotypes in MOLECULAR GENETICS AND GENOMICS
  • 2007-01. Distinct chromosomal distributions of highly repetitive sequences in maize in CHROMOSOME RESEARCH
  • 1997-03. The chromosomal distributions of Ty1-copia group retrotransposable elements in higher plants and their implications for genome evolution in GENETICA
  • 2011-07. Coexistence of NtCENH3 and two retrotransposons in tobacco centromeres in CHROMOSOME RESEARCH
  • 1998-06. Terminal Heterochromatin and Alternative Telomeric Sequences in Allium Cepa in CHROMOSOME RESEARCH
  • 2004-09. The centromeric regions of potato chromosomes contain megabase-sized tandem arrays of telomere-similar sequence in CHROMOSOMA
  • 1996-01. Preparation of tomato meiotic pachytene and mitotic metaphase chromosomes suitable for fluorescencein situ hybridization (FISH) in CHROMOSOME RESEARCH
  • 2008-12. Analysis of 90 Mb of the potato genome reveals conservation of gene structures and order with tomato but divergence in repetitive sequence composition in BMC GENOMICS
  • 2000-11. Development and applications of a set of chromosome-specific cytogenetic DNA markers in potato in THEORETICAL AND APPLIED GENETICS
  • 1978-10. Inheritance of genetic markers from two potato dihaploids and their respective parent cultivars in EUPHYTICA
  • 2012-01. Repetitive DNA and next-generation sequencing: computational challenges and solutions in NATURE REVIEWS GENETICS
  • 2013-01. How important are transposons for plant evolution? in NATURE REVIEWS GENETICS
  • 1994-09. The evolutionary dynamics of repetitive DNA in eukaryotes in NATURE
  • 1996-02. TheTy1-copia group retrotransposons inVicia species: copy number, sequence heterogeneity and chromosomal localisation in MOLECULAR GENETICS AND GENOMICS
  • 2011-07-10. Genome sequence and analysis of the tuber crop potato in NATURE
  • 1988-05. Species-specific DNA sequences for identification of somatic hybrids between Lycopersicon esculentum and Solanum acaule in THEORETICAL AND APPLIED GENETICS
  • 1990-11. Species-specific sequences in the genus Solanum: identification, characterization, and application to study somatic hybrids of S. brevidens and S. tuberosum in THEORETICAL AND APPLIED GENETICS
  • 1995-12. Distribution of novel and known repeated elements of Solanum and application for the identification of somatic hybrids among Solanum species in THEORETICAL AND APPLIED GENETICS
  • 1994-09. Organization of a Solatium brevidens repetitive sequence related to the TGRI subtelomeric repeats of Lycopersicon esculentum in THEORETICAL AND APPLIED GENETICS
  • 1996-09. High-resolution mapping on pachytene chromosomes and extended DNA fibres by fluorescencein-situ hybridisation in PLANT MOLECULAR BIOLOGY REPORTER
  • 2009-12. SolEST database: a "one-stop shop" approach to the study of Solanaceae transcriptomes in BMC PLANT BIOLOGY
  • 1988-09. In situ hybridization to somatic metaphase chromosomes of potato in THEORETICAL AND APPLIED GENETICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s00438-014-0891-8

    DOI

    http://dx.doi.org/10.1007/s00438-014-0891-8

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1050663192

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/25106953


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "about": [
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Genetics", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biological Sciences", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Base Sequence", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Chromosomes, Plant", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Consensus Sequence", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "DNA, Plant", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Genome, Plant", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Physical Chromosome Mapping", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Repetitive Sequences, Nucleic Acid", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Retroelements", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Solanum tuberosum", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Tandem Repeat Sequences", 
            "type": "DefinedTerm"
          }
        ], 
        "author": [
          {
            "affiliation": {
              "alternateName": "Colorado State University", 
              "id": "https://www.grid.ac/institutes/grid.47894.36", 
              "name": [
                "Wageningen UR Plant Breeding, Wageningen University and Research Centre, 6708 PB, Wageningen, The Netherlands", 
                "Department of Biology, Colorado State University, 80523, Fort Collins, CO, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Tang", 
            "givenName": "Xiaomin", 
            "id": "sg:person.0604325531.97", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0604325531.97"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "KeyGene (Netherlands)", 
              "id": "https://www.grid.ac/institutes/grid.425600.5", 
              "name": [
                "Keygene N.V., 216, 6700 AE, Wageningen, The Netherlands"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Datema", 
            "givenName": "Erwin", 
            "id": "sg:person.0735323217.34", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0735323217.34"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Wageningen University & Research", 
              "id": "https://www.grid.ac/institutes/grid.4818.5", 
              "name": [
                "Laboratory of Genetics, Wageningen University, 6700 AH, Wageningen, The Netherlands"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Guzman", 
            "givenName": "Myriam Olortegui", 
            "id": "sg:person.01201345176.00", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01201345176.00"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Wageningen University & Research", 
              "id": "https://www.grid.ac/institutes/grid.4818.5", 
              "name": [
                "Wageningen UR Plant Breeding, Wageningen University and Research Centre, 6708 PB, Wageningen, The Netherlands"
              ], 
              "type": "Organization"
            }, 
            "familyName": "de Boer", 
            "givenName": "Jan M.", 
            "id": "sg:person.0770410356.22", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0770410356.22"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Centre for BioSystems Genomics", 
              "id": "https://www.grid.ac/institutes/grid.450019.9", 
              "name": [
                "Wageningen UR Plant Breeding, Wageningen University and Research Centre, 6708 PB, Wageningen, The Netherlands", 
                "Center for BioSystems Genomics (CBSG), Wageningen, The Netherlands"
              ], 
              "type": "Organization"
            }, 
            "familyName": "van Eck", 
            "givenName": "Herman J.", 
            "id": "sg:person.01202757102.05", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01202757102.05"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Wageningen University & Research", 
              "id": "https://www.grid.ac/institutes/grid.4818.5", 
              "name": [
                "Wageningen UR Plant Breeding, Wageningen University and Research Centre, 6708 PB, Wageningen, The Netherlands"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Bachem", 
            "givenName": "Christian W. B.", 
            "id": "sg:person.01325137577.90", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01325137577.90"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Centre for BioSystems Genomics", 
              "id": "https://www.grid.ac/institutes/grid.450019.9", 
              "name": [
                "Wageningen UR Plant Breeding, Wageningen University and Research Centre, 6708 PB, Wageningen, The Netherlands", 
                "Center for BioSystems Genomics (CBSG), Wageningen, The Netherlands"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Visser", 
            "givenName": "Richard G. F.", 
            "id": "sg:person.07374343732.28", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07374343732.28"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Wageningen University & Research", 
              "id": "https://www.grid.ac/institutes/grid.4818.5", 
              "name": [
                "Laboratory of Genetics, Wageningen University, 6700 AH, Wageningen, The Netherlands"
              ], 
              "type": "Organization"
            }, 
            "familyName": "de Jong", 
            "givenName": "Hans", 
            "id": "sg:person.0624735717.33", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0624735717.33"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "sg:pub.10.1007/bf02671658", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1001891538", 
              "https://doi.org/10.1007/bf02671658"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.226102", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1002383776"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature10158", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1002525491", 
              "https://doi.org/10.1038/nature10158"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00224231", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1004139792", 
              "https://doi.org/10.1007/bf00224231"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00023703", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1004297980", 
              "https://doi.org/10.1007/bf00023703"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00023703", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1004297980", 
              "https://doi.org/10.1007/bf00023703"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00339590", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1004424855", 
              "https://doi.org/10.1007/bf00339590"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1126/science.1074973", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1005509866"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btm404", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1007683223"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1023/a:1009231019833", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1008427173", 
              "https://doi.org/10.1023/a:1009231019833"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1046/j.1365-313x.1998.00341.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1010565173"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1534/g3.111.000125", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1011024587"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1534/g3.111.000125", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1011024587"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1139/g97-020", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1011412619"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1139/g97-081", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012765505"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/0168-9452(96)04402-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1014443260"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2164-9-286", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1014504830", 
              "https://doi.org/10.1186/1471-2164-9-286"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s10577-006-1102-1", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1014983986", 
              "https://doi.org/10.1007/s10577-006-1102-1"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s10577-006-1102-1", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1014983986", 
              "https://doi.org/10.1007/s10577-006-1102-1"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00265587", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1016301094", 
              "https://doi.org/10.1007/bf00265587"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00265587", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1016301094", 
              "https://doi.org/10.1007/bf00265587"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1002/9780470015902.a0005270.pub2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1016325848"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2229-8-34", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1016870225", 
              "https://doi.org/10.1186/1471-2229-8-34"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00225022", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1017856289", 
              "https://doi.org/10.1007/bf00225022"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1139/g89-543", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1018501990"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/0092-8674(90)90141-z", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1019171834"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/35048507", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020135932", 
              "https://doi.org/10.1038/35048507"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/35048507", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020135932", 
              "https://doi.org/10.1038/35048507"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1126/science.1076466", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1021352833"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1139/g92-028", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1022007296"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1105/tpc.3.1.87", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1022734264"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2229-9-142", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023728594", 
              "https://doi.org/10.1186/1471-2229-9-142"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00220940", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024695454", 
              "https://doi.org/10.1007/bf00220940"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1159/000313502", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1025771225"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1017/s147720000700240x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027208778"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00412-004-0297-1", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027527983", 
              "https://doi.org/10.1007/s00412-004-0297-1"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1105/tpc.112.100511", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027861808"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/371215a0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028852240", 
              "https://doi.org/10.1038/371215a0"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1023/a:1018337831039", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1030223704", 
              "https://doi.org/10.1023/a:1018337831039"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02174388", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1032046614", 
              "https://doi.org/10.1007/bf02174388"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02174388", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1032046614", 
              "https://doi.org/10.1007/bf02174388"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02174388", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1032046614", 
              "https://doi.org/10.1007/bf02174388"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/27.2.573", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1035372973"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00299757", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1035439786", 
              "https://doi.org/10.1007/bf00299757"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1023/a:1005797222148", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1035562907", 
              "https://doi.org/10.1023/a:1005797222148"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1104/pp.105.060707", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036331692"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1139/g98-047", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1038029663"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.8.3.186", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1038920266"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s10577-009-9077-3", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039199196", 
              "https://doi.org/10.1007/s10577-009-9077-3"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s001220051573", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039611979", 
              "https://doi.org/10.1007/s001220051573"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s001220051573", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039611979", 
              "https://doi.org/10.1007/s001220051573"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02254940", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039839402", 
              "https://doi.org/10.1007/bf02254940"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02254940", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039839402", 
              "https://doi.org/10.1007/bf02254940"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00265343", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1040126741", 
              "https://doi.org/10.1007/bf00265343"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00265343", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1040126741", 
              "https://doi.org/10.1007/bf00265343"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0168-9452(97)00099-x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1041505303"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nrg3374", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1041941568", 
              "https://doi.org/10.1038/nrg3374"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1046/j.1365-313x.1998.00055.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1041946314"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1046/j.1365-313x.1998.00055.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1041946314"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nrg3117", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1044335233", 
              "https://doi.org/10.1038/nrg3117"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s12230-009-9097-8", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1045228913", 
              "https://doi.org/10.1007/s12230-009-9097-8"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s12230-009-9097-8", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1045228913", 
              "https://doi.org/10.1007/s12230-009-9097-8"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/25.17.3389", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047265454"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature11119", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047486795", 
              "https://doi.org/10.1038/nature11119"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1105/tpc.006106", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047989919"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.pbi.2004.07.003", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1048000517"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.8.3.175", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1048253030"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s10577-011-9219-2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1049653958", 
              "https://doi.org/10.1007/s10577-011-9219-2"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1006/fgbi.2001.1267", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1049982295"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1534/genetics.105.041087", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050018372"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1534/genetics.105.041087", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050018372"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature02651", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050259576", 
              "https://doi.org/10.1038/nature02651"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature02651", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050259576", 
              "https://doi.org/10.1038/nature02651"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00226974", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050924476", 
              "https://doi.org/10.1007/bf00226974"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1023/a:1009227009121", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1052052924", 
              "https://doi.org/10.1023/a:1009227009121"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s10577-008-1249-z", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1052759022", 
              "https://doi.org/10.1007/s10577-008-1249-z"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s004380050516", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1053081538", 
              "https://doi.org/10.1007/s004380050516"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1105/tpc.111.088682", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1053164537"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nrg2165", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1053647019", 
              "https://doi.org/10.1038/nrg2165"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1017/s001667230003295x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1053821423"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1126/science.1062329", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1062445197"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2307/3869202", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1070467261"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1075196821", 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1075259854", 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1076585308", 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2014-12", 
        "datePublishedReg": "2014-12-01", 
        "description": "One of the most powerful technologies in unraveling the organization of a eukaryotic plant genome is high-resolution Fluorescent in situ hybridization of repeats and single copy DNA sequences on pachytene chromosomes. This technology allows the integration of physical mapping information with chromosomal positions, including centromeres, telomeres, nucleolar-organizing region, and euchromatin and heterochromatin. In this report, we established chromosomal positions of different repeat fractions of the potato genomic DNA (Cot100, Cot500 and Cot1000) on the chromosomes. We also analysed various repeat elements that are unique to potato including the moderately repetitive P5 and REP2 elements, where the REP2 is part of a larger Gypsy-type LTR retrotransposon and cover most chromosome regions, with some brighter fluorescing spots in the heterochromatin. The most abundant tandem repeat is the potato genomic repeat 1 that covers subtelomeric regions of most chromosome arms. Extensive multiple alignments of these repetitive sequences in the assembled RH89-039-16 potato BACs and the draft assembly of the DM1-3 516 R44 genome shed light on the conservation of these repeats within the potato genome. The consensus sequences thus obtained revealed the native complete transposable elements from which they were derived. ", 
        "genre": "research_article", 
        "id": "sg:pub.10.1007/s00438-014-0891-8", 
        "inLanguage": [
          "en"
        ], 
        "isAccessibleForFree": false, 
        "isPartOf": [
          {
            "id": "sg:journal.1297380", 
            "issn": [
              "1617-4615", 
              "1432-1874"
            ], 
            "name": "Molecular Genetics and Genomics", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "6", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "289"
          }
        ], 
        "name": "Chromosomal organizations of major repeat families on potato (Solanum tuberosum) and further exploring in its sequenced genome", 
        "pagination": "1307-1319", 
        "productId": [
          {
            "name": "readcube_id", 
            "type": "PropertyValue", 
            "value": [
              "f1574f2c9318cb5069b94439fe4904ab346a93496f539026b53a7a667e417cae"
            ]
          }, 
          {
            "name": "pubmed_id", 
            "type": "PropertyValue", 
            "value": [
              "25106953"
            ]
          }, 
          {
            "name": "nlm_unique_id", 
            "type": "PropertyValue", 
            "value": [
              "101093320"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1007/s00438-014-0891-8"
            ]
          }, 
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1050663192"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1007/s00438-014-0891-8", 
          "https://app.dimensions.ai/details/publication/pub.1050663192"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2019-04-10T20:48", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8684_00000516.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "http://link.springer.com/10.1007%2Fs00438-014-0891-8"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00438-014-0891-8'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00438-014-0891-8'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00438-014-0891-8'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00438-014-0891-8'


     

    This table displays all metadata directly associated to this object as RDF triples.

    415 TRIPLES      21 PREDICATES      110 URIs      31 LITERALS      19 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1007/s00438-014-0891-8 schema:about N26a95f0f830241a2900ed5edb5deb000
    2 N3636d88a57e142efb210adc392761a30
    3 N549a90fbdf1347e9bacdb965f809aa08
    4 N8268174b44b2451ba22aaec3303cfa08
    5 N8cf3725cb8a94d50812c85e2ae85355a
    6 N8f18348662ee4d6a84016c3a58055b34
    7 Na8562a2f3d094e4080b94ee7ffd23053
    8 Nbdaf011cb5b044a0870b57345ecd3665
    9 Ndbb7edb4cc6c4c2d8a201909b42d3afa
    10 Ndf8fbfba53664ef5a61997be6421a7f8
    11 anzsrc-for:06
    12 anzsrc-for:0604
    13 schema:author N0cced9140c3f41c8b6d2ef7dc11af972
    14 schema:citation sg:pub.10.1007/bf00023703
    15 sg:pub.10.1007/bf00220940
    16 sg:pub.10.1007/bf00224231
    17 sg:pub.10.1007/bf00225022
    18 sg:pub.10.1007/bf00226974
    19 sg:pub.10.1007/bf00265343
    20 sg:pub.10.1007/bf00265587
    21 sg:pub.10.1007/bf00299757
    22 sg:pub.10.1007/bf00339590
    23 sg:pub.10.1007/bf02174388
    24 sg:pub.10.1007/bf02254940
    25 sg:pub.10.1007/bf02671658
    26 sg:pub.10.1007/s001220051573
    27 sg:pub.10.1007/s00412-004-0297-1
    28 sg:pub.10.1007/s004380050516
    29 sg:pub.10.1007/s10577-006-1102-1
    30 sg:pub.10.1007/s10577-008-1249-z
    31 sg:pub.10.1007/s10577-009-9077-3
    32 sg:pub.10.1007/s10577-011-9219-2
    33 sg:pub.10.1007/s12230-009-9097-8
    34 sg:pub.10.1023/a:1005797222148
    35 sg:pub.10.1023/a:1009227009121
    36 sg:pub.10.1023/a:1009231019833
    37 sg:pub.10.1023/a:1018337831039
    38 sg:pub.10.1038/35048507
    39 sg:pub.10.1038/371215a0
    40 sg:pub.10.1038/nature02651
    41 sg:pub.10.1038/nature10158
    42 sg:pub.10.1038/nature11119
    43 sg:pub.10.1038/nrg2165
    44 sg:pub.10.1038/nrg3117
    45 sg:pub.10.1038/nrg3374
    46 sg:pub.10.1186/1471-2164-9-286
    47 sg:pub.10.1186/1471-2229-8-34
    48 sg:pub.10.1186/1471-2229-9-142
    49 https://app.dimensions.ai/details/publication/pub.1075196821
    50 https://app.dimensions.ai/details/publication/pub.1075259854
    51 https://app.dimensions.ai/details/publication/pub.1076585308
    52 https://doi.org/10.1002/9780470015902.a0005270.pub2
    53 https://doi.org/10.1006/fgbi.2001.1267
    54 https://doi.org/10.1016/0092-8674(90)90141-z
    55 https://doi.org/10.1016/0168-9452(96)04402-0
    56 https://doi.org/10.1016/j.pbi.2004.07.003
    57 https://doi.org/10.1016/s0168-9452(97)00099-x
    58 https://doi.org/10.1017/s001667230003295x
    59 https://doi.org/10.1017/s147720000700240x
    60 https://doi.org/10.1046/j.1365-313x.1998.00055.x
    61 https://doi.org/10.1046/j.1365-313x.1998.00341.x
    62 https://doi.org/10.1093/bioinformatics/btm404
    63 https://doi.org/10.1093/nar/25.17.3389
    64 https://doi.org/10.1093/nar/27.2.573
    65 https://doi.org/10.1101/gr.226102
    66 https://doi.org/10.1101/gr.8.3.175
    67 https://doi.org/10.1101/gr.8.3.186
    68 https://doi.org/10.1104/pp.105.060707
    69 https://doi.org/10.1105/tpc.006106
    70 https://doi.org/10.1105/tpc.111.088682
    71 https://doi.org/10.1105/tpc.112.100511
    72 https://doi.org/10.1105/tpc.3.1.87
    73 https://doi.org/10.1126/science.1062329
    74 https://doi.org/10.1126/science.1074973
    75 https://doi.org/10.1126/science.1076466
    76 https://doi.org/10.1139/g89-543
    77 https://doi.org/10.1139/g92-028
    78 https://doi.org/10.1139/g97-020
    79 https://doi.org/10.1139/g97-081
    80 https://doi.org/10.1139/g98-047
    81 https://doi.org/10.1159/000313502
    82 https://doi.org/10.1534/g3.111.000125
    83 https://doi.org/10.1534/genetics.105.041087
    84 https://doi.org/10.2307/3869202
    85 schema:datePublished 2014-12
    86 schema:datePublishedReg 2014-12-01
    87 schema:description One of the most powerful technologies in unraveling the organization of a eukaryotic plant genome is high-resolution Fluorescent in situ hybridization of repeats and single copy DNA sequences on pachytene chromosomes. This technology allows the integration of physical mapping information with chromosomal positions, including centromeres, telomeres, nucleolar-organizing region, and euchromatin and heterochromatin. In this report, we established chromosomal positions of different repeat fractions of the potato genomic DNA (Cot100, Cot500 and Cot1000) on the chromosomes. We also analysed various repeat elements that are unique to potato including the moderately repetitive P5 and REP2 elements, where the REP2 is part of a larger Gypsy-type LTR retrotransposon and cover most chromosome regions, with some brighter fluorescing spots in the heterochromatin. The most abundant tandem repeat is the potato genomic repeat 1 that covers subtelomeric regions of most chromosome arms. Extensive multiple alignments of these repetitive sequences in the assembled RH89-039-16 potato BACs and the draft assembly of the DM1-3 516 R44 genome shed light on the conservation of these repeats within the potato genome. The consensus sequences thus obtained revealed the native complete transposable elements from which they were derived.
    88 schema:genre research_article
    89 schema:inLanguage en
    90 schema:isAccessibleForFree false
    91 schema:isPartOf N12765347fdf84ecd86faef151268807f
    92 Ne6324b45b31140f4894559f70b0c33cb
    93 sg:journal.1297380
    94 schema:name Chromosomal organizations of major repeat families on potato (Solanum tuberosum) and further exploring in its sequenced genome
    95 schema:pagination 1307-1319
    96 schema:productId N02a117e0e34d4b87a1bfb72d40dd1f69
    97 N20245e9c334a4d96b516de173b5fff3c
    98 N2a5dcd463c1a4433b63d2cfdb351570d
    99 N5629662b7565496bababb8a878395810
    100 N5fa68f0f104e4564ad58f85e41d3d26a
    101 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050663192
    102 https://doi.org/10.1007/s00438-014-0891-8
    103 schema:sdDatePublished 2019-04-10T20:48
    104 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    105 schema:sdPublisher N882e070f243c4fcfbb5ee20dcaa9c46e
    106 schema:url http://link.springer.com/10.1007%2Fs00438-014-0891-8
    107 sgo:license sg:explorer/license/
    108 sgo:sdDataset articles
    109 rdf:type schema:ScholarlyArticle
    110 N02a117e0e34d4b87a1bfb72d40dd1f69 schema:name doi
    111 schema:value 10.1007/s00438-014-0891-8
    112 rdf:type schema:PropertyValue
    113 N0cced9140c3f41c8b6d2ef7dc11af972 rdf:first sg:person.0604325531.97
    114 rdf:rest Ne8f8aac205324ea588ee0aec4bcb7f16
    115 N12765347fdf84ecd86faef151268807f schema:issueNumber 6
    116 rdf:type schema:PublicationIssue
    117 N13570d758e3f4038809fed44995345c6 rdf:first sg:person.01201345176.00
    118 rdf:rest Ndf1ff42685c245c78d4f8e7555605e6c
    119 N19b857bcc4384e1dbec09366eb38483e rdf:first sg:person.0624735717.33
    120 rdf:rest rdf:nil
    121 N20245e9c334a4d96b516de173b5fff3c schema:name dimensions_id
    122 schema:value pub.1050663192
    123 rdf:type schema:PropertyValue
    124 N25e8beca5b094d8c83a0b1972f8e9007 rdf:first sg:person.07374343732.28
    125 rdf:rest N19b857bcc4384e1dbec09366eb38483e
    126 N26a95f0f830241a2900ed5edb5deb000 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    127 schema:name Solanum tuberosum
    128 rdf:type schema:DefinedTerm
    129 N2a5dcd463c1a4433b63d2cfdb351570d schema:name pubmed_id
    130 schema:value 25106953
    131 rdf:type schema:PropertyValue
    132 N3636d88a57e142efb210adc392761a30 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    133 schema:name Genome, Plant
    134 rdf:type schema:DefinedTerm
    135 N549a90fbdf1347e9bacdb965f809aa08 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    136 schema:name Chromosomes, Plant
    137 rdf:type schema:DefinedTerm
    138 N5629662b7565496bababb8a878395810 schema:name readcube_id
    139 schema:value f1574f2c9318cb5069b94439fe4904ab346a93496f539026b53a7a667e417cae
    140 rdf:type schema:PropertyValue
    141 N5fa68f0f104e4564ad58f85e41d3d26a schema:name nlm_unique_id
    142 schema:value 101093320
    143 rdf:type schema:PropertyValue
    144 N8268174b44b2451ba22aaec3303cfa08 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    145 schema:name Physical Chromosome Mapping
    146 rdf:type schema:DefinedTerm
    147 N882e070f243c4fcfbb5ee20dcaa9c46e schema:name Springer Nature - SN SciGraph project
    148 rdf:type schema:Organization
    149 N8cf3725cb8a94d50812c85e2ae85355a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    150 schema:name Consensus Sequence
    151 rdf:type schema:DefinedTerm
    152 N8f18348662ee4d6a84016c3a58055b34 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    153 schema:name DNA, Plant
    154 rdf:type schema:DefinedTerm
    155 Na8562a2f3d094e4080b94ee7ffd23053 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    156 schema:name Retroelements
    157 rdf:type schema:DefinedTerm
    158 Nbdaf011cb5b044a0870b57345ecd3665 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    159 schema:name Repetitive Sequences, Nucleic Acid
    160 rdf:type schema:DefinedTerm
    161 Ndbb7edb4cc6c4c2d8a201909b42d3afa schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    162 schema:name Base Sequence
    163 rdf:type schema:DefinedTerm
    164 Ndf1ff42685c245c78d4f8e7555605e6c rdf:first sg:person.0770410356.22
    165 rdf:rest Nfa5213efd47c480eb27534ef298f47a9
    166 Ndf8fbfba53664ef5a61997be6421a7f8 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    167 schema:name Tandem Repeat Sequences
    168 rdf:type schema:DefinedTerm
    169 Ne6324b45b31140f4894559f70b0c33cb schema:volumeNumber 289
    170 rdf:type schema:PublicationVolume
    171 Ne8f8aac205324ea588ee0aec4bcb7f16 rdf:first sg:person.0735323217.34
    172 rdf:rest N13570d758e3f4038809fed44995345c6
    173 Ne9333e1b86f74fc18c33479c2674a32a rdf:first sg:person.01325137577.90
    174 rdf:rest N25e8beca5b094d8c83a0b1972f8e9007
    175 Nfa5213efd47c480eb27534ef298f47a9 rdf:first sg:person.01202757102.05
    176 rdf:rest Ne9333e1b86f74fc18c33479c2674a32a
    177 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
    178 schema:name Biological Sciences
    179 rdf:type schema:DefinedTerm
    180 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
    181 schema:name Genetics
    182 rdf:type schema:DefinedTerm
    183 sg:journal.1297380 schema:issn 1432-1874
    184 1617-4615
    185 schema:name Molecular Genetics and Genomics
    186 rdf:type schema:Periodical
    187 sg:person.01201345176.00 schema:affiliation https://www.grid.ac/institutes/grid.4818.5
    188 schema:familyName Guzman
    189 schema:givenName Myriam Olortegui
    190 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01201345176.00
    191 rdf:type schema:Person
    192 sg:person.01202757102.05 schema:affiliation https://www.grid.ac/institutes/grid.450019.9
    193 schema:familyName van Eck
    194 schema:givenName Herman J.
    195 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01202757102.05
    196 rdf:type schema:Person
    197 sg:person.01325137577.90 schema:affiliation https://www.grid.ac/institutes/grid.4818.5
    198 schema:familyName Bachem
    199 schema:givenName Christian W. B.
    200 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01325137577.90
    201 rdf:type schema:Person
    202 sg:person.0604325531.97 schema:affiliation https://www.grid.ac/institutes/grid.47894.36
    203 schema:familyName Tang
    204 schema:givenName Xiaomin
    205 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0604325531.97
    206 rdf:type schema:Person
    207 sg:person.0624735717.33 schema:affiliation https://www.grid.ac/institutes/grid.4818.5
    208 schema:familyName de Jong
    209 schema:givenName Hans
    210 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0624735717.33
    211 rdf:type schema:Person
    212 sg:person.0735323217.34 schema:affiliation https://www.grid.ac/institutes/grid.425600.5
    213 schema:familyName Datema
    214 schema:givenName Erwin
    215 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0735323217.34
    216 rdf:type schema:Person
    217 sg:person.07374343732.28 schema:affiliation https://www.grid.ac/institutes/grid.450019.9
    218 schema:familyName Visser
    219 schema:givenName Richard G. F.
    220 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07374343732.28
    221 rdf:type schema:Person
    222 sg:person.0770410356.22 schema:affiliation https://www.grid.ac/institutes/grid.4818.5
    223 schema:familyName de Boer
    224 schema:givenName Jan M.
    225 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0770410356.22
    226 rdf:type schema:Person
    227 sg:pub.10.1007/bf00023703 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004297980
    228 https://doi.org/10.1007/bf00023703
    229 rdf:type schema:CreativeWork
    230 sg:pub.10.1007/bf00220940 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024695454
    231 https://doi.org/10.1007/bf00220940
    232 rdf:type schema:CreativeWork
    233 sg:pub.10.1007/bf00224231 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004139792
    234 https://doi.org/10.1007/bf00224231
    235 rdf:type schema:CreativeWork
    236 sg:pub.10.1007/bf00225022 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017856289
    237 https://doi.org/10.1007/bf00225022
    238 rdf:type schema:CreativeWork
    239 sg:pub.10.1007/bf00226974 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050924476
    240 https://doi.org/10.1007/bf00226974
    241 rdf:type schema:CreativeWork
    242 sg:pub.10.1007/bf00265343 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040126741
    243 https://doi.org/10.1007/bf00265343
    244 rdf:type schema:CreativeWork
    245 sg:pub.10.1007/bf00265587 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016301094
    246 https://doi.org/10.1007/bf00265587
    247 rdf:type schema:CreativeWork
    248 sg:pub.10.1007/bf00299757 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035439786
    249 https://doi.org/10.1007/bf00299757
    250 rdf:type schema:CreativeWork
    251 sg:pub.10.1007/bf00339590 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004424855
    252 https://doi.org/10.1007/bf00339590
    253 rdf:type schema:CreativeWork
    254 sg:pub.10.1007/bf02174388 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032046614
    255 https://doi.org/10.1007/bf02174388
    256 rdf:type schema:CreativeWork
    257 sg:pub.10.1007/bf02254940 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039839402
    258 https://doi.org/10.1007/bf02254940
    259 rdf:type schema:CreativeWork
    260 sg:pub.10.1007/bf02671658 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001891538
    261 https://doi.org/10.1007/bf02671658
    262 rdf:type schema:CreativeWork
    263 sg:pub.10.1007/s001220051573 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039611979
    264 https://doi.org/10.1007/s001220051573
    265 rdf:type schema:CreativeWork
    266 sg:pub.10.1007/s00412-004-0297-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027527983
    267 https://doi.org/10.1007/s00412-004-0297-1
    268 rdf:type schema:CreativeWork
    269 sg:pub.10.1007/s004380050516 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053081538
    270 https://doi.org/10.1007/s004380050516
    271 rdf:type schema:CreativeWork
    272 sg:pub.10.1007/s10577-006-1102-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014983986
    273 https://doi.org/10.1007/s10577-006-1102-1
    274 rdf:type schema:CreativeWork
    275 sg:pub.10.1007/s10577-008-1249-z schema:sameAs https://app.dimensions.ai/details/publication/pub.1052759022
    276 https://doi.org/10.1007/s10577-008-1249-z
    277 rdf:type schema:CreativeWork
    278 sg:pub.10.1007/s10577-009-9077-3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039199196
    279 https://doi.org/10.1007/s10577-009-9077-3
    280 rdf:type schema:CreativeWork
    281 sg:pub.10.1007/s10577-011-9219-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049653958
    282 https://doi.org/10.1007/s10577-011-9219-2
    283 rdf:type schema:CreativeWork
    284 sg:pub.10.1007/s12230-009-9097-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045228913
    285 https://doi.org/10.1007/s12230-009-9097-8
    286 rdf:type schema:CreativeWork
    287 sg:pub.10.1023/a:1005797222148 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035562907
    288 https://doi.org/10.1023/a:1005797222148
    289 rdf:type schema:CreativeWork
    290 sg:pub.10.1023/a:1009227009121 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052052924
    291 https://doi.org/10.1023/a:1009227009121
    292 rdf:type schema:CreativeWork
    293 sg:pub.10.1023/a:1009231019833 schema:sameAs https://app.dimensions.ai/details/publication/pub.1008427173
    294 https://doi.org/10.1023/a:1009231019833
    295 rdf:type schema:CreativeWork
    296 sg:pub.10.1023/a:1018337831039 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030223704
    297 https://doi.org/10.1023/a:1018337831039
    298 rdf:type schema:CreativeWork
    299 sg:pub.10.1038/35048507 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020135932
    300 https://doi.org/10.1038/35048507
    301 rdf:type schema:CreativeWork
    302 sg:pub.10.1038/371215a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028852240
    303 https://doi.org/10.1038/371215a0
    304 rdf:type schema:CreativeWork
    305 sg:pub.10.1038/nature02651 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050259576
    306 https://doi.org/10.1038/nature02651
    307 rdf:type schema:CreativeWork
    308 sg:pub.10.1038/nature10158 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002525491
    309 https://doi.org/10.1038/nature10158
    310 rdf:type schema:CreativeWork
    311 sg:pub.10.1038/nature11119 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047486795
    312 https://doi.org/10.1038/nature11119
    313 rdf:type schema:CreativeWork
    314 sg:pub.10.1038/nrg2165 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053647019
    315 https://doi.org/10.1038/nrg2165
    316 rdf:type schema:CreativeWork
    317 sg:pub.10.1038/nrg3117 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044335233
    318 https://doi.org/10.1038/nrg3117
    319 rdf:type schema:CreativeWork
    320 sg:pub.10.1038/nrg3374 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041941568
    321 https://doi.org/10.1038/nrg3374
    322 rdf:type schema:CreativeWork
    323 sg:pub.10.1186/1471-2164-9-286 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014504830
    324 https://doi.org/10.1186/1471-2164-9-286
    325 rdf:type schema:CreativeWork
    326 sg:pub.10.1186/1471-2229-8-34 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016870225
    327 https://doi.org/10.1186/1471-2229-8-34
    328 rdf:type schema:CreativeWork
    329 sg:pub.10.1186/1471-2229-9-142 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023728594
    330 https://doi.org/10.1186/1471-2229-9-142
    331 rdf:type schema:CreativeWork
    332 https://app.dimensions.ai/details/publication/pub.1075196821 schema:CreativeWork
    333 https://app.dimensions.ai/details/publication/pub.1075259854 schema:CreativeWork
    334 https://app.dimensions.ai/details/publication/pub.1076585308 schema:CreativeWork
    335 https://doi.org/10.1002/9780470015902.a0005270.pub2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016325848
    336 rdf:type schema:CreativeWork
    337 https://doi.org/10.1006/fgbi.2001.1267 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049982295
    338 rdf:type schema:CreativeWork
    339 https://doi.org/10.1016/0092-8674(90)90141-z schema:sameAs https://app.dimensions.ai/details/publication/pub.1019171834
    340 rdf:type schema:CreativeWork
    341 https://doi.org/10.1016/0168-9452(96)04402-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014443260
    342 rdf:type schema:CreativeWork
    343 https://doi.org/10.1016/j.pbi.2004.07.003 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048000517
    344 rdf:type schema:CreativeWork
    345 https://doi.org/10.1016/s0168-9452(97)00099-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1041505303
    346 rdf:type schema:CreativeWork
    347 https://doi.org/10.1017/s001667230003295x schema:sameAs https://app.dimensions.ai/details/publication/pub.1053821423
    348 rdf:type schema:CreativeWork
    349 https://doi.org/10.1017/s147720000700240x schema:sameAs https://app.dimensions.ai/details/publication/pub.1027208778
    350 rdf:type schema:CreativeWork
    351 https://doi.org/10.1046/j.1365-313x.1998.00055.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1041946314
    352 rdf:type schema:CreativeWork
    353 https://doi.org/10.1046/j.1365-313x.1998.00341.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1010565173
    354 rdf:type schema:CreativeWork
    355 https://doi.org/10.1093/bioinformatics/btm404 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007683223
    356 rdf:type schema:CreativeWork
    357 https://doi.org/10.1093/nar/25.17.3389 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047265454
    358 rdf:type schema:CreativeWork
    359 https://doi.org/10.1093/nar/27.2.573 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035372973
    360 rdf:type schema:CreativeWork
    361 https://doi.org/10.1101/gr.226102 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002383776
    362 rdf:type schema:CreativeWork
    363 https://doi.org/10.1101/gr.8.3.175 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048253030
    364 rdf:type schema:CreativeWork
    365 https://doi.org/10.1101/gr.8.3.186 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038920266
    366 rdf:type schema:CreativeWork
    367 https://doi.org/10.1104/pp.105.060707 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036331692
    368 rdf:type schema:CreativeWork
    369 https://doi.org/10.1105/tpc.006106 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047989919
    370 rdf:type schema:CreativeWork
    371 https://doi.org/10.1105/tpc.111.088682 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053164537
    372 rdf:type schema:CreativeWork
    373 https://doi.org/10.1105/tpc.112.100511 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027861808
    374 rdf:type schema:CreativeWork
    375 https://doi.org/10.1105/tpc.3.1.87 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022734264
    376 rdf:type schema:CreativeWork
    377 https://doi.org/10.1126/science.1062329 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062445197
    378 rdf:type schema:CreativeWork
    379 https://doi.org/10.1126/science.1074973 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005509866
    380 rdf:type schema:CreativeWork
    381 https://doi.org/10.1126/science.1076466 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021352833
    382 rdf:type schema:CreativeWork
    383 https://doi.org/10.1139/g89-543 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018501990
    384 rdf:type schema:CreativeWork
    385 https://doi.org/10.1139/g92-028 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022007296
    386 rdf:type schema:CreativeWork
    387 https://doi.org/10.1139/g97-020 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011412619
    388 rdf:type schema:CreativeWork
    389 https://doi.org/10.1139/g97-081 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012765505
    390 rdf:type schema:CreativeWork
    391 https://doi.org/10.1139/g98-047 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038029663
    392 rdf:type schema:CreativeWork
    393 https://doi.org/10.1159/000313502 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025771225
    394 rdf:type schema:CreativeWork
    395 https://doi.org/10.1534/g3.111.000125 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011024587
    396 rdf:type schema:CreativeWork
    397 https://doi.org/10.1534/genetics.105.041087 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050018372
    398 rdf:type schema:CreativeWork
    399 https://doi.org/10.2307/3869202 schema:sameAs https://app.dimensions.ai/details/publication/pub.1070467261
    400 rdf:type schema:CreativeWork
    401 https://www.grid.ac/institutes/grid.425600.5 schema:alternateName KeyGene (Netherlands)
    402 schema:name Keygene N.V., 216, 6700 AE, Wageningen, The Netherlands
    403 rdf:type schema:Organization
    404 https://www.grid.ac/institutes/grid.450019.9 schema:alternateName Centre for BioSystems Genomics
    405 schema:name Center for BioSystems Genomics (CBSG), Wageningen, The Netherlands
    406 Wageningen UR Plant Breeding, Wageningen University and Research Centre, 6708 PB, Wageningen, The Netherlands
    407 rdf:type schema:Organization
    408 https://www.grid.ac/institutes/grid.47894.36 schema:alternateName Colorado State University
    409 schema:name Department of Biology, Colorado State University, 80523, Fort Collins, CO, USA
    410 Wageningen UR Plant Breeding, Wageningen University and Research Centre, 6708 PB, Wageningen, The Netherlands
    411 rdf:type schema:Organization
    412 https://www.grid.ac/institutes/grid.4818.5 schema:alternateName Wageningen University & Research
    413 schema:name Laboratory of Genetics, Wageningen University, 6700 AH, Wageningen, The Netherlands
    414 Wageningen UR Plant Breeding, Wageningen University and Research Centre, 6708 PB, Wageningen, The Netherlands
    415 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...