Comparative use of InDel and SSR markers in deciphering the interspecific structure of cultivated citrus genetic diversity: a perspective for ... View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2012-01

AUTHORS

Andrés García-Lor, François Luro, Luis Navarro, Patrick Ollitrault

ABSTRACT

Genetic stratification associated with domestication history is a key parameter for estimating the pertinence of genetic association study within a gene pool. Previous molecular and phenotypic studies have shown that most of the diversity of cultivated citrus results from recombination between three main species: C. medica (citron), C. reticulata (mandarin) and C. maxima (pummelo). However, the precise contribution of each of these basic species to the genomes of secondary cultivated species, such as C. sinensis (sweet orange), C. limon (lemon), C. aurantium (sour orange), C. paradisi (grapefruit) and recent hybrids is unknown. Our study focused on: (1) the development of insertion-deletion (InDel) markers and their comparison with SSR markers for use in genetic diversity and phylogenetic studies; (2) the analysis of the contributions of basic taxa to the genomes of secondary species and modern cultivars and (3) the description of the organisation of the Citrus gene pool, to evaluate how genetic association studies should be done at the cultivated Citrus gene pool level. InDel markers appear to be better phylogenetic markers for tracing the contributions of the three ancestral species, whereas SSR markers are more useful for intraspecific diversity analysis. Most of the genetic organisation of the Citrus gene pool is related to the differentiation between C. reticulata, C. maxima and C. medica. High and generalised LD was observed, probably due to the initial differentiation between the basic species and a limited number of interspecific recombinations. This structure precludes association genetic studies at the genus level without developing additional recombinant populations from interspecific hybrids. Association genetic studies should also be affordable at intraspecific level in a less structured pool such as C. reticulata. More... »

PAGES

77-94

References to SciGraph publications

  • 1998-07. Analysis of the genetic diversity among mandarins (Citrus spp.) using RAPD markers in EUPHYTICA
  • 1997-04. Integration of trinucleotide microsatellites into a linkage map of Citrus in THEORETICAL AND APPLIED GENETICS
  • 2006-08. Principal components analysis corrects for stratification in genome-wide association studies in NATURE GENETICS
  • 2010-12. Discriminant analysis of principal components: a new method for the analysis of genetically structured populations in BMC GENETICS
  • 2007-01. Karyotype diversity and the origin of grapefruit in CHROMOSOME RESEARCH
  • 1998-05. Phylogenetic relationships within the genus Citrus (Rutaceae) and related genera as revealed by RFLP and RAPD analysis in THEORETICAL AND APPLIED GENETICS
  • 2008-12. Development of genomic resources for Citrus clementina: Characterization of three deep-coverage BAC libraries and analysis of 46,000 BAC end sequences in BMC GENOMICS
  • 2010-02. Genome-wide discovery of DNA polymorphism in Brassica rapa in MOLECULAR GENETICS AND GENOMICS
  • 2000-06. Citrus phylogeny and genetic origin of important species as investigated by molecular markers in THEORETICAL AND APPLIED GENETICS
  • 2005-03. Linkage disequilibrium and association studies in higher plants: Present status and future prospects in PLANT MOLECULAR BIOLOGY
  • 2006-07. Development of PCR-based allele-specific and InDel marker sets for nine rice blast resistance genes in THEORETICAL AND APPLIED GENETICS
  • 2006-09. Repetitive Indel Markers within the ALMT1 Gene Conditioning Aluminium Tolerance in Wheat (Triticum aestivum L.) in MOLECULAR BREEDING
  • 2011-08. Evidence for non-disomic inheritance in a Citrus interspecific tetraploid somatic hybrid between C. reticulata and C. limon using SSR markers and cytogenetic analysis in PLANT CELL REPORTS
  • 2011-11. Multilocus half-tetrad analysis and centromere mapping in citrus: evidence of SDR mechanism for 2n megagametophyte production and partial chiasma interference in mandarin cv ‘Fortune’ in HEREDITY
  • 2008-12. Transferability of the EST-SSRs developed on Nules clementine (Citrus clementina Hort ex Tan) to other Citrus species and their effectiveness for genetic mapping in BMC GENOMICS
  • 2010-12. Discovery and application of insertion-deletion (INDEL) polymorphisms for QTL mapping of early life-history traits in Atlantic salmon in BMC GENOMICS
  • 2009-09. What phylogeny and gene genealogy analyses reveal about homoplasy in citrus microsatellite alleles in PLANT SYSTEMATICS AND EVOLUTION
  • 2007-12. Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance in BMC GENOMICS
  • 2005-02. Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies in PLANT MOLECULAR BIOLOGY
  • 1996-04. Genetic diversity in the orange subfamily Aurantioideae. I. Intraspecies and intragenus genetic variability in THEORETICAL AND APPLIED GENETICS
  • 2006-05. Assessing genetic diversity and population structure in a citrus germplasm collection utilizing simple sequence repeat markers (SSRs) in THEORETICAL AND APPLIED GENETICS
  • 2002-02. The extent of linkage disequilibrium in Arabidopsis thaliana in NATURE GENETICS
  • 2001-07. Dwarf8 polymorphisms associate with variation in flowering time in NATURE GENETICS
  • 2000-12. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana in NATURE
  • 2011-02. New universal mitochondrial PCR markers reveal new information on maternal citrus phylogeny in TREE GENETICS & GENOMES
  • 2002-12. SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines in BMC GENETICS
  • 1986-03. The plastome of Citrus. Physical map, variation among Citrus cultivars and species and comparison with related genera in THEORETICAL AND APPLIED GENETICS
  • 2008-12. Insertion-deletion polymorphisms (indels) as genetic markers in natural populations in BMC GENETICS
  • 2006-02. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness in NATURE GENETICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s00438-011-0658-4

    DOI

    http://dx.doi.org/10.1007/s00438-011-0658-4

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1018087909

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/22160318


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "about": [
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Genetics", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biological Sciences", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Base Sequence", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Citrus", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Cluster Analysis", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "DNA Primers", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Genetic Association Studies", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Genetic Variation", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Genetics, Population", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Genotype", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "INDEL Mutation", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Linkage Disequilibrium", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Microsatellite Repeats", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Models, Genetic", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Molecular Sequence Data", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Phylogeny", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Principal Component Analysis", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Sequence Analysis, DNA", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Species Specificity", 
            "type": "DefinedTerm"
          }
        ], 
        "author": [
          {
            "affiliation": {
              "alternateName": "Instituto Valenciano de Investigaciones Agrarias", 
              "id": "https://www.grid.ac/institutes/grid.419276.f", 
              "name": [
                "Centro de Protecci\u00f3n Vegetal y Biotecnolog\u00eda, Instituto Valenciano de Investigaciones Agrarias (IVIA), 46113, Moncada, Valencia, Spain"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Garc\u00eda-Lor", 
            "givenName": "Andr\u00e9s", 
            "id": "sg:person.01341215325.65", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01341215325.65"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "French National Institute for Agricultural Research", 
              "id": "https://www.grid.ac/institutes/grid.414548.8", 
              "name": [
                "Unit\u00e9 de Recherche GEQA, Institut National de la Recherche Agronomique (INRA), 20230, San Giuliano, France"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Luro", 
            "givenName": "Fran\u00e7ois", 
            "id": "sg:person.01106403021.64", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01106403021.64"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Instituto Valenciano de Investigaciones Agrarias", 
              "id": "https://www.grid.ac/institutes/grid.419276.f", 
              "name": [
                "Centro de Protecci\u00f3n Vegetal y Biotecnolog\u00eda, Instituto Valenciano de Investigaciones Agrarias (IVIA), 46113, Moncada, Valencia, Spain"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Navarro", 
            "givenName": "Luis", 
            "id": "sg:person.01337025443.76", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01337025443.76"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Instituto Valenciano de Investigaciones Agrarias", 
              "id": "https://www.grid.ac/institutes/grid.419276.f", 
              "name": [
                "Centro de Protecci\u00f3n Vegetal y Biotecnolog\u00eda, Instituto Valenciano de Investigaciones Agrarias (IVIA), 46113, Moncada, Valencia, Spain", 
                "Department BIOS, TGU AGAP, International Center for of Agricultural Research for Development (CIRAD), Avenue Agropolis, TA A-75/02, 34398, Montpellier Cedex 5, France"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Ollitrault", 
            "givenName": "Patrick", 
            "id": "sg:person.01205753552.49", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01205753552.49"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "sg:pub.10.1007/s00299-011-1050-x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1000159521", 
              "https://doi.org/10.1007/s00299-011-1050-x"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00299-011-1050-x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1000159521", 
              "https://doi.org/10.1007/s00299-011-1050-x"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00122-006-0255-9", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1001683278", 
              "https://doi.org/10.1007/s00122-006-0255-9"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00122-006-0255-9", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1001683278", 
              "https://doi.org/10.1007/s00122-006-0255-9"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.201394398", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1001866470"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2164-11-156", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1002727893", 
              "https://doi.org/10.1186/1471-2164-11-156"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.scienta.2009.02.018", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1003457212"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng813", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1003787037", 
              "https://doi.org/10.1038/ng813"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng813", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1003787037", 
              "https://doi.org/10.1038/ng813"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1471-8286.2007.01893.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1004503431"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00606-009-0208-2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1005311169", 
              "https://doi.org/10.1007/s00606-009-0208-2"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00606-009-0208-2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1005311169", 
              "https://doi.org/10.1007/s00606-009-0208-2"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00606-009-0208-2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1005311169", 
              "https://doi.org/10.1007/s00606-009-0208-2"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/oxfordjournals.molbev.a026411", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1006184426"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.0330964100", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1006641070"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s10577-006-1101-2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1009037111", 
              "https://doi.org/10.1007/s10577-006-1101-2"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00266989", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1009185765", 
              "https://doi.org/10.1007/bf00266989"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00266989", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1009185765", 
              "https://doi.org/10.1007/bf00266989"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1006/mpev.2001.1008", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012059319"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/90135", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012195764", 
              "https://doi.org/10.1038/90135"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/90135", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012195764", 
              "https://doi.org/10.1038/90135"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1155/2008/574927", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012618499"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1023/a:1018300900275", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015625598", 
              "https://doi.org/10.1023/a:1018300900275"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s11032-006-9025-2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1018828822", 
              "https://doi.org/10.1007/s11032-006-9025-2"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2164-9-287", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1021124397", 
              "https://doi.org/10.1186/1471-2164-9-287"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1146/annurev.arplant.54.031902.134907", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1021273162"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/hmg/2.8.1123", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1021309137"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.tig.2003.12.002", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1021519377"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.4565806", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023389443"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/aob/mcr099", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023996805"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1534/genetics.104.034959", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1025441450"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1534/genetics.104.034959", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1025441450"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/hdy.2011.33", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1025719850", 
              "https://doi.org/10.1038/hdy.2011.33"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/bts460", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1026432648"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1086/318793", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1026740757"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2156-11-94", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027835018", 
              "https://doi.org/10.1186/1471-2156-11-94"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s001220051419", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028157449", 
              "https://doi.org/10.1007/s001220051419"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s001220051419", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028157449", 
              "https://doi.org/10.1007/s001220051419"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng1847", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1031429813", 
              "https://doi.org/10.1038/ng1847"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng1847", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1031429813", 
              "https://doi.org/10.1038/ng1847"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00122-006-0290-6", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1032083686", 
              "https://doi.org/10.1007/s00122-006-0290-6"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00122-006-0290-6", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1032083686", 
              "https://doi.org/10.1007/s00122-006-0290-6"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s11103-004-7926-1", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1032145102", 
              "https://doi.org/10.1007/s11103-004-7926-1"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1139/g03-139", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1033759534"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s001220050807", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1035744142", 
              "https://doi.org/10.1007/s001220050807"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s001220050807", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1035744142", 
              "https://doi.org/10.1007/s001220050807"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng1702", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1035781360", 
              "https://doi.org/10.1038/ng1702"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng1702", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1035781360", 
              "https://doi.org/10.1038/ng1702"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00438-009-0504-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036966503", 
              "https://doi.org/10.1007/s00438-009-0504-0"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00438-009-0504-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036966503", 
              "https://doi.org/10.1007/s00438-009-0504-0"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.3732/ajb.1000280", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039731312"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s11103-005-0257-z", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1040170512", 
              "https://doi.org/10.1007/s11103-005-0257-z"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/bti282", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1040416489"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00224564", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1040877253", 
              "https://doi.org/10.1007/bf00224564"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1002/1098-2272(200101)20:1<4::aid-gepi2>3.0.co;2-t", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1042758740"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/35048692", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1044298669", 
              "https://doi.org/10.1038/35048692"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/35048692", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1044298669", 
              "https://doi.org/10.1038/35048692"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s11295-010-0314-x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1045284286", 
              "https://doi.org/10.1007/s11295-010-0314-x"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s001220050468", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1046139180", 
              "https://doi.org/10.1007/s001220050468"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s001220050468", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1046139180", 
              "https://doi.org/10.1007/s001220050468"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/0169-5347(96)10049-5", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047615819"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2156-3-19", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1048046969", 
              "https://doi.org/10.1186/1471-2156-3-19"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2164-8-31", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050499959", 
              "https://doi.org/10.1186/1471-2164-8-31"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2156-9-8", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051357965", 
              "https://doi.org/10.1186/1471-2156-9-8"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2164-9-423", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051644675", 
              "https://doi.org/10.1186/1471-2164-9-423"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1471-8286.2005.01155.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1052284706"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1471-8286.2005.01155.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1052284706"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1021/jf0526644", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1055904550"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1021/jf0526644", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1055904550"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1021/jf070711h", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1055906676"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1021/jf070711h", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1055906676"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.17660/actahortic.2001.546.27", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1068401531"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.17660/actahortic.2007.760.17", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1068415238"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2135/cropsci2007.02.0080", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1069030256"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2307/2408641", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1069917637"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2307/2418325", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1069921872"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2307/2418763", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1069922227"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2307/2442183", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1069935626"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.3835/plantgenome2008.02.0089", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1071447719"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.7751/telopea19971007", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1074025820"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1074647594", 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1075335894", 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1076585304", 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/oxfordjournals.molbev.a040454", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1079752303"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1558-5646.1984.tb05657.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1085737796"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1079/9780851990194.0019", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1089216386"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1079/9780851990194.0045", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1089216387"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2307/2484763", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1102612753"
            ], 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2012-01", 
        "datePublishedReg": "2012-01-01", 
        "description": "Genetic stratification associated with domestication history is a key parameter for estimating the pertinence of genetic association study within a gene pool. Previous molecular and phenotypic studies have shown that most of the diversity of cultivated citrus results from recombination between three main species: C. medica (citron), C. reticulata (mandarin) and C. maxima (pummelo). However, the precise contribution of each of these basic species to the genomes of secondary cultivated species, such as C. sinensis (sweet orange), C. limon (lemon), C. aurantium (sour orange), C. paradisi (grapefruit) and recent hybrids is unknown. Our study focused on: (1) the development of insertion-deletion (InDel) markers and their comparison with SSR markers for use in genetic diversity and phylogenetic studies; (2) the analysis of the contributions of basic taxa to the genomes of secondary species and modern cultivars and (3) the description of the organisation of the  Citrus gene pool, to evaluate how genetic association studies should be done at the cultivated Citrus gene pool level. InDel markers appear to be better phylogenetic markers for tracing the contributions of the three ancestral species, whereas SSR markers are more useful for intraspecific diversity analysis. Most of the genetic organisation of the Citrus gene pool is related to the differentiation between C. reticulata, C. maxima and C. medica. High and generalised LD was observed, probably due to the initial differentiation between the basic species and a limited number of interspecific recombinations. This structure precludes association genetic studies at the genus level without developing additional recombinant populations from interspecific hybrids. Association genetic studies should also be affordable at intraspecific level in a less structured pool such as C. reticulata.", 
        "genre": "research_article", 
        "id": "sg:pub.10.1007/s00438-011-0658-4", 
        "inLanguage": [
          "en"
        ], 
        "isAccessibleForFree": false, 
        "isPartOf": [
          {
            "id": "sg:journal.1297380", 
            "issn": [
              "1617-4615", 
              "1432-1874"
            ], 
            "name": "Molecular Genetics and Genomics", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "1", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "287"
          }
        ], 
        "name": "Comparative use of InDel and SSR markers in deciphering the interspecific structure of cultivated citrus genetic diversity: a perspective for genetic association studies", 
        "pagination": "77-94", 
        "productId": [
          {
            "name": "readcube_id", 
            "type": "PropertyValue", 
            "value": [
              "562e79a90d526311ee16f5546e3b0bd6b5a2ac36185611b34f569e69c1ef728d"
            ]
          }, 
          {
            "name": "pubmed_id", 
            "type": "PropertyValue", 
            "value": [
              "22160318"
            ]
          }, 
          {
            "name": "nlm_unique_id", 
            "type": "PropertyValue", 
            "value": [
              "101093320"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1007/s00438-011-0658-4"
            ]
          }, 
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1018087909"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1007/s00438-011-0658-4", 
          "https://app.dimensions.ai/details/publication/pub.1018087909"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2019-04-11T09:53", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000347_0000000347/records_89793_00000000.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "https://link.springer.com/10.1007%2Fs00438-011-0658-4"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00438-011-0658-4'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00438-011-0658-4'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00438-011-0658-4'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00438-011-0658-4'


     

    This table displays all metadata directly associated to this object as RDF triples.

    395 TRIPLES      21 PREDICATES      115 URIs      38 LITERALS      26 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1007/s00438-011-0658-4 schema:about N01be0e3b4367480ca6406ffb78ae8e65
    2 N040b510ed7634df8b8ac369203939afb
    3 N05fddf0d6b854bd68c7aaeb83818d96e
    4 N0a54be8b919c49fd8973ac0c374fab7b
    5 N4b43722a1f5a4253a1a6177d32e295d1
    6 N60c23b678d9c48758dba651bed66abb3
    7 N6ed289ad61ba428bac60c3dbc54742cb
    8 N81bf727c4f9643a78f2cbd1d36784b9e
    9 N835b4a6514e64cd9a2a917cf75b4696d
    10 N9534aa9359e24d7d942aa7165492a33d
    11 N9a00da6a9cb547efb608045f653e19da
    12 Nb9ca65233b354fde8876efd85b7584ad
    13 Nc89bd1c6b9cb4c01b714f6736f731f73
    14 Ncacd15d9f5094e8da6dd7f97fe2e4c9d
    15 Nce3bd16404414974bc53d498becefad0
    16 Nf95330f373534220a8a8a69ae5a5d818
    17 Nfe7a3732834d4709974132054abb4e22
    18 anzsrc-for:06
    19 anzsrc-for:0604
    20 schema:author N4843c2f75b3d46168bdbacfcd4f98df2
    21 schema:citation sg:pub.10.1007/bf00224564
    22 sg:pub.10.1007/bf00266989
    23 sg:pub.10.1007/s00122-006-0255-9
    24 sg:pub.10.1007/s00122-006-0290-6
    25 sg:pub.10.1007/s001220050468
    26 sg:pub.10.1007/s001220050807
    27 sg:pub.10.1007/s001220051419
    28 sg:pub.10.1007/s00299-011-1050-x
    29 sg:pub.10.1007/s00438-009-0504-0
    30 sg:pub.10.1007/s00606-009-0208-2
    31 sg:pub.10.1007/s10577-006-1101-2
    32 sg:pub.10.1007/s11032-006-9025-2
    33 sg:pub.10.1007/s11103-004-7926-1
    34 sg:pub.10.1007/s11103-005-0257-z
    35 sg:pub.10.1007/s11295-010-0314-x
    36 sg:pub.10.1023/a:1018300900275
    37 sg:pub.10.1038/35048692
    38 sg:pub.10.1038/90135
    39 sg:pub.10.1038/hdy.2011.33
    40 sg:pub.10.1038/ng1702
    41 sg:pub.10.1038/ng1847
    42 sg:pub.10.1038/ng813
    43 sg:pub.10.1186/1471-2156-11-94
    44 sg:pub.10.1186/1471-2156-3-19
    45 sg:pub.10.1186/1471-2156-9-8
    46 sg:pub.10.1186/1471-2164-11-156
    47 sg:pub.10.1186/1471-2164-8-31
    48 sg:pub.10.1186/1471-2164-9-287
    49 sg:pub.10.1186/1471-2164-9-423
    50 https://app.dimensions.ai/details/publication/pub.1074647594
    51 https://app.dimensions.ai/details/publication/pub.1075335894
    52 https://app.dimensions.ai/details/publication/pub.1076585304
    53 https://doi.org/10.1002/1098-2272(200101)20:1<4::aid-gepi2>3.0.co;2-t
    54 https://doi.org/10.1006/mpev.2001.1008
    55 https://doi.org/10.1016/0169-5347(96)10049-5
    56 https://doi.org/10.1016/j.scienta.2009.02.018
    57 https://doi.org/10.1016/j.tig.2003.12.002
    58 https://doi.org/10.1021/jf0526644
    59 https://doi.org/10.1021/jf070711h
    60 https://doi.org/10.1073/pnas.0330964100
    61 https://doi.org/10.1073/pnas.201394398
    62 https://doi.org/10.1079/9780851990194.0019
    63 https://doi.org/10.1079/9780851990194.0045
    64 https://doi.org/10.1086/318793
    65 https://doi.org/10.1093/aob/mcr099
    66 https://doi.org/10.1093/bioinformatics/bti282
    67 https://doi.org/10.1093/bioinformatics/bts460
    68 https://doi.org/10.1093/hmg/2.8.1123
    69 https://doi.org/10.1093/oxfordjournals.molbev.a026411
    70 https://doi.org/10.1093/oxfordjournals.molbev.a040454
    71 https://doi.org/10.1101/gr.4565806
    72 https://doi.org/10.1111/j.1471-8286.2005.01155.x
    73 https://doi.org/10.1111/j.1471-8286.2007.01893.x
    74 https://doi.org/10.1111/j.1558-5646.1984.tb05657.x
    75 https://doi.org/10.1139/g03-139
    76 https://doi.org/10.1146/annurev.arplant.54.031902.134907
    77 https://doi.org/10.1155/2008/574927
    78 https://doi.org/10.1534/genetics.104.034959
    79 https://doi.org/10.17660/actahortic.2001.546.27
    80 https://doi.org/10.17660/actahortic.2007.760.17
    81 https://doi.org/10.2135/cropsci2007.02.0080
    82 https://doi.org/10.2307/2408641
    83 https://doi.org/10.2307/2418325
    84 https://doi.org/10.2307/2418763
    85 https://doi.org/10.2307/2442183
    86 https://doi.org/10.2307/2484763
    87 https://doi.org/10.3732/ajb.1000280
    88 https://doi.org/10.3835/plantgenome2008.02.0089
    89 https://doi.org/10.7751/telopea19971007
    90 schema:datePublished 2012-01
    91 schema:datePublishedReg 2012-01-01
    92 schema:description Genetic stratification associated with domestication history is a key parameter for estimating the pertinence of genetic association study within a gene pool. Previous molecular and phenotypic studies have shown that most of the diversity of cultivated citrus results from recombination between three main species: C. medica (citron), C. reticulata (mandarin) and C. maxima (pummelo). However, the precise contribution of each of these basic species to the genomes of secondary cultivated species, such as C. sinensis (sweet orange), C. limon (lemon), C. aurantium (sour orange), C. paradisi (grapefruit) and recent hybrids is unknown. Our study focused on: (1) the development of insertion-deletion (InDel) markers and their comparison with SSR markers for use in genetic diversity and phylogenetic studies; (2) the analysis of the contributions of basic taxa to the genomes of secondary species and modern cultivars and (3) the description of the organisation of the Citrus gene pool, to evaluate how genetic association studies should be done at the cultivated Citrus gene pool level. InDel markers appear to be better phylogenetic markers for tracing the contributions of the three ancestral species, whereas SSR markers are more useful for intraspecific diversity analysis. Most of the genetic organisation of the Citrus gene pool is related to the differentiation between C. reticulata, C. maxima and C. medica. High and generalised LD was observed, probably due to the initial differentiation between the basic species and a limited number of interspecific recombinations. This structure precludes association genetic studies at the genus level without developing additional recombinant populations from interspecific hybrids. Association genetic studies should also be affordable at intraspecific level in a less structured pool such as C. reticulata.
    93 schema:genre research_article
    94 schema:inLanguage en
    95 schema:isAccessibleForFree false
    96 schema:isPartOf N2d67f28972204c29887e23ecef82041b
    97 N8a2810e5f153458a9adefa59bb71eae5
    98 sg:journal.1297380
    99 schema:name Comparative use of InDel and SSR markers in deciphering the interspecific structure of cultivated citrus genetic diversity: a perspective for genetic association studies
    100 schema:pagination 77-94
    101 schema:productId N1b98f5dda29645e58e0f59ae93e0d095
    102 N32998c01e6a444a3884b31894ead7222
    103 N58c1106c056c4167890b66738cd07d57
    104 Nb98ea214752a47b7a250e2e6eb73d8ce
    105 Nd146ff8efca84f748507cd1da1b535fb
    106 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018087909
    107 https://doi.org/10.1007/s00438-011-0658-4
    108 schema:sdDatePublished 2019-04-11T09:53
    109 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    110 schema:sdPublisher Nbcdaaad8583141079b575a5ae37389a0
    111 schema:url https://link.springer.com/10.1007%2Fs00438-011-0658-4
    112 sgo:license sg:explorer/license/
    113 sgo:sdDataset articles
    114 rdf:type schema:ScholarlyArticle
    115 N01be0e3b4367480ca6406ffb78ae8e65 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    116 schema:name Microsatellite Repeats
    117 rdf:type schema:DefinedTerm
    118 N040b510ed7634df8b8ac369203939afb schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    119 schema:name Genotype
    120 rdf:type schema:DefinedTerm
    121 N05fddf0d6b854bd68c7aaeb83818d96e schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    122 schema:name Molecular Sequence Data
    123 rdf:type schema:DefinedTerm
    124 N0a54be8b919c49fd8973ac0c374fab7b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    125 schema:name Base Sequence
    126 rdf:type schema:DefinedTerm
    127 N1b98f5dda29645e58e0f59ae93e0d095 schema:name readcube_id
    128 schema:value 562e79a90d526311ee16f5546e3b0bd6b5a2ac36185611b34f569e69c1ef728d
    129 rdf:type schema:PropertyValue
    130 N2165881a354845589564a38eaec4016f rdf:first sg:person.01106403021.64
    131 rdf:rest Ndcf96e946da1499e85402910e14bc368
    132 N2d67f28972204c29887e23ecef82041b schema:volumeNumber 287
    133 rdf:type schema:PublicationVolume
    134 N32998c01e6a444a3884b31894ead7222 schema:name dimensions_id
    135 schema:value pub.1018087909
    136 rdf:type schema:PropertyValue
    137 N4843c2f75b3d46168bdbacfcd4f98df2 rdf:first sg:person.01341215325.65
    138 rdf:rest N2165881a354845589564a38eaec4016f
    139 N4b43722a1f5a4253a1a6177d32e295d1 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    140 schema:name Cluster Analysis
    141 rdf:type schema:DefinedTerm
    142 N58c1106c056c4167890b66738cd07d57 schema:name nlm_unique_id
    143 schema:value 101093320
    144 rdf:type schema:PropertyValue
    145 N60c23b678d9c48758dba651bed66abb3 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    146 schema:name Models, Genetic
    147 rdf:type schema:DefinedTerm
    148 N6ed289ad61ba428bac60c3dbc54742cb schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    149 schema:name Genetic Association Studies
    150 rdf:type schema:DefinedTerm
    151 N74e2768d49dd4e768b337dda0b9dd26c rdf:first sg:person.01205753552.49
    152 rdf:rest rdf:nil
    153 N81bf727c4f9643a78f2cbd1d36784b9e schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    154 schema:name Citrus
    155 rdf:type schema:DefinedTerm
    156 N835b4a6514e64cd9a2a917cf75b4696d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    157 schema:name Principal Component Analysis
    158 rdf:type schema:DefinedTerm
    159 N8a2810e5f153458a9adefa59bb71eae5 schema:issueNumber 1
    160 rdf:type schema:PublicationIssue
    161 N9534aa9359e24d7d942aa7165492a33d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    162 schema:name Phylogeny
    163 rdf:type schema:DefinedTerm
    164 N9a00da6a9cb547efb608045f653e19da schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    165 schema:name Species Specificity
    166 rdf:type schema:DefinedTerm
    167 Nb98ea214752a47b7a250e2e6eb73d8ce schema:name pubmed_id
    168 schema:value 22160318
    169 rdf:type schema:PropertyValue
    170 Nb9ca65233b354fde8876efd85b7584ad schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    171 schema:name Genetics, Population
    172 rdf:type schema:DefinedTerm
    173 Nbcdaaad8583141079b575a5ae37389a0 schema:name Springer Nature - SN SciGraph project
    174 rdf:type schema:Organization
    175 Nc89bd1c6b9cb4c01b714f6736f731f73 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    176 schema:name Linkage Disequilibrium
    177 rdf:type schema:DefinedTerm
    178 Ncacd15d9f5094e8da6dd7f97fe2e4c9d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    179 schema:name Sequence Analysis, DNA
    180 rdf:type schema:DefinedTerm
    181 Nce3bd16404414974bc53d498becefad0 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    182 schema:name INDEL Mutation
    183 rdf:type schema:DefinedTerm
    184 Nd146ff8efca84f748507cd1da1b535fb schema:name doi
    185 schema:value 10.1007/s00438-011-0658-4
    186 rdf:type schema:PropertyValue
    187 Ndcf96e946da1499e85402910e14bc368 rdf:first sg:person.01337025443.76
    188 rdf:rest N74e2768d49dd4e768b337dda0b9dd26c
    189 Nf95330f373534220a8a8a69ae5a5d818 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    190 schema:name DNA Primers
    191 rdf:type schema:DefinedTerm
    192 Nfe7a3732834d4709974132054abb4e22 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    193 schema:name Genetic Variation
    194 rdf:type schema:DefinedTerm
    195 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
    196 schema:name Biological Sciences
    197 rdf:type schema:DefinedTerm
    198 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
    199 schema:name Genetics
    200 rdf:type schema:DefinedTerm
    201 sg:journal.1297380 schema:issn 1432-1874
    202 1617-4615
    203 schema:name Molecular Genetics and Genomics
    204 rdf:type schema:Periodical
    205 sg:person.01106403021.64 schema:affiliation https://www.grid.ac/institutes/grid.414548.8
    206 schema:familyName Luro
    207 schema:givenName François
    208 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01106403021.64
    209 rdf:type schema:Person
    210 sg:person.01205753552.49 schema:affiliation https://www.grid.ac/institutes/grid.419276.f
    211 schema:familyName Ollitrault
    212 schema:givenName Patrick
    213 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01205753552.49
    214 rdf:type schema:Person
    215 sg:person.01337025443.76 schema:affiliation https://www.grid.ac/institutes/grid.419276.f
    216 schema:familyName Navarro
    217 schema:givenName Luis
    218 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01337025443.76
    219 rdf:type schema:Person
    220 sg:person.01341215325.65 schema:affiliation https://www.grid.ac/institutes/grid.419276.f
    221 schema:familyName García-Lor
    222 schema:givenName Andrés
    223 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01341215325.65
    224 rdf:type schema:Person
    225 sg:pub.10.1007/bf00224564 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040877253
    226 https://doi.org/10.1007/bf00224564
    227 rdf:type schema:CreativeWork
    228 sg:pub.10.1007/bf00266989 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009185765
    229 https://doi.org/10.1007/bf00266989
    230 rdf:type schema:CreativeWork
    231 sg:pub.10.1007/s00122-006-0255-9 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001683278
    232 https://doi.org/10.1007/s00122-006-0255-9
    233 rdf:type schema:CreativeWork
    234 sg:pub.10.1007/s00122-006-0290-6 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032083686
    235 https://doi.org/10.1007/s00122-006-0290-6
    236 rdf:type schema:CreativeWork
    237 sg:pub.10.1007/s001220050468 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046139180
    238 https://doi.org/10.1007/s001220050468
    239 rdf:type schema:CreativeWork
    240 sg:pub.10.1007/s001220050807 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035744142
    241 https://doi.org/10.1007/s001220050807
    242 rdf:type schema:CreativeWork
    243 sg:pub.10.1007/s001220051419 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028157449
    244 https://doi.org/10.1007/s001220051419
    245 rdf:type schema:CreativeWork
    246 sg:pub.10.1007/s00299-011-1050-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1000159521
    247 https://doi.org/10.1007/s00299-011-1050-x
    248 rdf:type schema:CreativeWork
    249 sg:pub.10.1007/s00438-009-0504-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036966503
    250 https://doi.org/10.1007/s00438-009-0504-0
    251 rdf:type schema:CreativeWork
    252 sg:pub.10.1007/s00606-009-0208-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005311169
    253 https://doi.org/10.1007/s00606-009-0208-2
    254 rdf:type schema:CreativeWork
    255 sg:pub.10.1007/s10577-006-1101-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009037111
    256 https://doi.org/10.1007/s10577-006-1101-2
    257 rdf:type schema:CreativeWork
    258 sg:pub.10.1007/s11032-006-9025-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018828822
    259 https://doi.org/10.1007/s11032-006-9025-2
    260 rdf:type schema:CreativeWork
    261 sg:pub.10.1007/s11103-004-7926-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032145102
    262 https://doi.org/10.1007/s11103-004-7926-1
    263 rdf:type schema:CreativeWork
    264 sg:pub.10.1007/s11103-005-0257-z schema:sameAs https://app.dimensions.ai/details/publication/pub.1040170512
    265 https://doi.org/10.1007/s11103-005-0257-z
    266 rdf:type schema:CreativeWork
    267 sg:pub.10.1007/s11295-010-0314-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1045284286
    268 https://doi.org/10.1007/s11295-010-0314-x
    269 rdf:type schema:CreativeWork
    270 sg:pub.10.1023/a:1018300900275 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015625598
    271 https://doi.org/10.1023/a:1018300900275
    272 rdf:type schema:CreativeWork
    273 sg:pub.10.1038/35048692 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044298669
    274 https://doi.org/10.1038/35048692
    275 rdf:type schema:CreativeWork
    276 sg:pub.10.1038/90135 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012195764
    277 https://doi.org/10.1038/90135
    278 rdf:type schema:CreativeWork
    279 sg:pub.10.1038/hdy.2011.33 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025719850
    280 https://doi.org/10.1038/hdy.2011.33
    281 rdf:type schema:CreativeWork
    282 sg:pub.10.1038/ng1702 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035781360
    283 https://doi.org/10.1038/ng1702
    284 rdf:type schema:CreativeWork
    285 sg:pub.10.1038/ng1847 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031429813
    286 https://doi.org/10.1038/ng1847
    287 rdf:type schema:CreativeWork
    288 sg:pub.10.1038/ng813 schema:sameAs https://app.dimensions.ai/details/publication/pub.1003787037
    289 https://doi.org/10.1038/ng813
    290 rdf:type schema:CreativeWork
    291 sg:pub.10.1186/1471-2156-11-94 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027835018
    292 https://doi.org/10.1186/1471-2156-11-94
    293 rdf:type schema:CreativeWork
    294 sg:pub.10.1186/1471-2156-3-19 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048046969
    295 https://doi.org/10.1186/1471-2156-3-19
    296 rdf:type schema:CreativeWork
    297 sg:pub.10.1186/1471-2156-9-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051357965
    298 https://doi.org/10.1186/1471-2156-9-8
    299 rdf:type schema:CreativeWork
    300 sg:pub.10.1186/1471-2164-11-156 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002727893
    301 https://doi.org/10.1186/1471-2164-11-156
    302 rdf:type schema:CreativeWork
    303 sg:pub.10.1186/1471-2164-8-31 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050499959
    304 https://doi.org/10.1186/1471-2164-8-31
    305 rdf:type schema:CreativeWork
    306 sg:pub.10.1186/1471-2164-9-287 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021124397
    307 https://doi.org/10.1186/1471-2164-9-287
    308 rdf:type schema:CreativeWork
    309 sg:pub.10.1186/1471-2164-9-423 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051644675
    310 https://doi.org/10.1186/1471-2164-9-423
    311 rdf:type schema:CreativeWork
    312 https://app.dimensions.ai/details/publication/pub.1074647594 schema:CreativeWork
    313 https://app.dimensions.ai/details/publication/pub.1075335894 schema:CreativeWork
    314 https://app.dimensions.ai/details/publication/pub.1076585304 schema:CreativeWork
    315 https://doi.org/10.1002/1098-2272(200101)20:1<4::aid-gepi2>3.0.co;2-t schema:sameAs https://app.dimensions.ai/details/publication/pub.1042758740
    316 rdf:type schema:CreativeWork
    317 https://doi.org/10.1006/mpev.2001.1008 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012059319
    318 rdf:type schema:CreativeWork
    319 https://doi.org/10.1016/0169-5347(96)10049-5 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047615819
    320 rdf:type schema:CreativeWork
    321 https://doi.org/10.1016/j.scienta.2009.02.018 schema:sameAs https://app.dimensions.ai/details/publication/pub.1003457212
    322 rdf:type schema:CreativeWork
    323 https://doi.org/10.1016/j.tig.2003.12.002 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021519377
    324 rdf:type schema:CreativeWork
    325 https://doi.org/10.1021/jf0526644 schema:sameAs https://app.dimensions.ai/details/publication/pub.1055904550
    326 rdf:type schema:CreativeWork
    327 https://doi.org/10.1021/jf070711h schema:sameAs https://app.dimensions.ai/details/publication/pub.1055906676
    328 rdf:type schema:CreativeWork
    329 https://doi.org/10.1073/pnas.0330964100 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006641070
    330 rdf:type schema:CreativeWork
    331 https://doi.org/10.1073/pnas.201394398 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001866470
    332 rdf:type schema:CreativeWork
    333 https://doi.org/10.1079/9780851990194.0019 schema:sameAs https://app.dimensions.ai/details/publication/pub.1089216386
    334 rdf:type schema:CreativeWork
    335 https://doi.org/10.1079/9780851990194.0045 schema:sameAs https://app.dimensions.ai/details/publication/pub.1089216387
    336 rdf:type schema:CreativeWork
    337 https://doi.org/10.1086/318793 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026740757
    338 rdf:type schema:CreativeWork
    339 https://doi.org/10.1093/aob/mcr099 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023996805
    340 rdf:type schema:CreativeWork
    341 https://doi.org/10.1093/bioinformatics/bti282 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040416489
    342 rdf:type schema:CreativeWork
    343 https://doi.org/10.1093/bioinformatics/bts460 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026432648
    344 rdf:type schema:CreativeWork
    345 https://doi.org/10.1093/hmg/2.8.1123 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021309137
    346 rdf:type schema:CreativeWork
    347 https://doi.org/10.1093/oxfordjournals.molbev.a026411 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006184426
    348 rdf:type schema:CreativeWork
    349 https://doi.org/10.1093/oxfordjournals.molbev.a040454 schema:sameAs https://app.dimensions.ai/details/publication/pub.1079752303
    350 rdf:type schema:CreativeWork
    351 https://doi.org/10.1101/gr.4565806 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023389443
    352 rdf:type schema:CreativeWork
    353 https://doi.org/10.1111/j.1471-8286.2005.01155.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1052284706
    354 rdf:type schema:CreativeWork
    355 https://doi.org/10.1111/j.1471-8286.2007.01893.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1004503431
    356 rdf:type schema:CreativeWork
    357 https://doi.org/10.1111/j.1558-5646.1984.tb05657.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1085737796
    358 rdf:type schema:CreativeWork
    359 https://doi.org/10.1139/g03-139 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033759534
    360 rdf:type schema:CreativeWork
    361 https://doi.org/10.1146/annurev.arplant.54.031902.134907 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021273162
    362 rdf:type schema:CreativeWork
    363 https://doi.org/10.1155/2008/574927 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012618499
    364 rdf:type schema:CreativeWork
    365 https://doi.org/10.1534/genetics.104.034959 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025441450
    366 rdf:type schema:CreativeWork
    367 https://doi.org/10.17660/actahortic.2001.546.27 schema:sameAs https://app.dimensions.ai/details/publication/pub.1068401531
    368 rdf:type schema:CreativeWork
    369 https://doi.org/10.17660/actahortic.2007.760.17 schema:sameAs https://app.dimensions.ai/details/publication/pub.1068415238
    370 rdf:type schema:CreativeWork
    371 https://doi.org/10.2135/cropsci2007.02.0080 schema:sameAs https://app.dimensions.ai/details/publication/pub.1069030256
    372 rdf:type schema:CreativeWork
    373 https://doi.org/10.2307/2408641 schema:sameAs https://app.dimensions.ai/details/publication/pub.1069917637
    374 rdf:type schema:CreativeWork
    375 https://doi.org/10.2307/2418325 schema:sameAs https://app.dimensions.ai/details/publication/pub.1069921872
    376 rdf:type schema:CreativeWork
    377 https://doi.org/10.2307/2418763 schema:sameAs https://app.dimensions.ai/details/publication/pub.1069922227
    378 rdf:type schema:CreativeWork
    379 https://doi.org/10.2307/2442183 schema:sameAs https://app.dimensions.ai/details/publication/pub.1069935626
    380 rdf:type schema:CreativeWork
    381 https://doi.org/10.2307/2484763 schema:sameAs https://app.dimensions.ai/details/publication/pub.1102612753
    382 rdf:type schema:CreativeWork
    383 https://doi.org/10.3732/ajb.1000280 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039731312
    384 rdf:type schema:CreativeWork
    385 https://doi.org/10.3835/plantgenome2008.02.0089 schema:sameAs https://app.dimensions.ai/details/publication/pub.1071447719
    386 rdf:type schema:CreativeWork
    387 https://doi.org/10.7751/telopea19971007 schema:sameAs https://app.dimensions.ai/details/publication/pub.1074025820
    388 rdf:type schema:CreativeWork
    389 https://www.grid.ac/institutes/grid.414548.8 schema:alternateName French National Institute for Agricultural Research
    390 schema:name Unité de Recherche GEQA, Institut National de la Recherche Agronomique (INRA), 20230, San Giuliano, France
    391 rdf:type schema:Organization
    392 https://www.grid.ac/institutes/grid.419276.f schema:alternateName Instituto Valenciano de Investigaciones Agrarias
    393 schema:name Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), 46113, Moncada, Valencia, Spain
    394 Department BIOS, TGU AGAP, International Center for of Agricultural Research for Development (CIRAD), Avenue Agropolis, TA A-75/02, 34398, Montpellier Cedex 5, France
    395 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...