Genome-wide distribution and potential regulatory functions of AtATE, a novel family of miniature inverted-repeat transposable elements in Arabidopsis thaliana View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2002-05-15

AUTHORS

A. El Amrani, L. Marie, A. Aïnouche, J. Nicolas, I. Couée

ABSTRACT

. A study of transgenic promoter::β-glucuronidase lines showed that the promoters of the two Arabidopsis ARGININE DECARBOXYLASE paralogues, ADC1 and ADC2, exhibited extremely different patterns of activity. One major feature of the promoter of ADC1 was the presence of a novel transposable element, which was shown to possess all of the characteristics of Miniature Inverted-repeat Transposable Elements (MITEs), and to be present in 26 full-length copies and 1617 partial copies and fragments distributed throughout the Arabidopsis genome. TRANSFAC analysis showed that this transposable element possesses a significant number of transcription-factor binding motifs. A bioinformatics approach based on a suffix-tree compilation was used to obtain an exhaustive description of exact copy numbers and positions of the element in the Arabidopsis genome. The distribution among the chromosomes was non-random, and a significant number of copies were found in regions flanking genes. Full-length copies of the transposable element were detected in the immediate vicinity of 22 genes, either upstream or downstream. More... »

PAGES

459-471

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s00438-002-0675-4

DOI

http://dx.doi.org/10.1007/s00438-002-0675-4

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1000400471

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/12111553


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