Ontology type: schema:ScholarlyArticle
2017-05
AUTHORSJ. Y. Zhang, Y. L. Zhao, M.D. Batueva, D. Luo, Z. F. Xing, Q. Q. Zhang, X. H. Liu
ABSTRACTThe traditional taxonomy of the genus Chloromyxum Mingazzini, 1890 has been intensively challenged to be paraphyletic by recent ribosomal DNA (rDNA)-based phylogenetic analysis. Undersampling to get rich sequence data to infer more scientific phylogenetic relationships makes scientists conservatively assign all non-marine elasmobranch-infecting species as Chloromyxum sensu lato. Although complex ridge pattern on the spore surface observed by scanning electron microscopy was thought to be critical for the identification of Chloromyxum species, insufficient data also prevent this ultrastructural data to be a valid taxonomic feature for this genus. It is especial for Chloromyxum species to be reported in China. Molecular and ultrastructural characteristics are yet available for all 22 Chloromyxum species recorded in China. During the investigation of the diversity of coelozoic fish myxosporeans, Chloromyxum ellipticum Li & Nie, 1973 was found to highly infect the gall bladder of Ctenopharyngodon idellus Valenciennes, 1844 in Poyang Lake watershed of Jiangxi province, Eastern China. Here, we redescribed it by the currently recommended holistic approach of combining morphological, ultrastructural, and molecular characteristics. Mature spores were found floating free in the gall bladder, but no plasmodium observed. Spores are typical freshwater teleost-infecting Chloromyxum species, spherical or subspherical in lateral view, measuring 7.7 ± 0.08 μm (6.9-9.1) in length, 6.3 ± 0.09 μm (5.6-7.6) in width, and 5.8 ± 0.20 μm (5.2-6.3) in thickness. Four pyriform polar capsules, located at the anterior end of the spores, were equal in size, 3.3 ± 0.06 μm (2.2-4.1) long and 2.1 ± 0.03 μm (1.7-2.5) wide. Polar filaments coiled with four to five turns. Two equal spore valves are symmetrical, with 10-16 surface extrasutural ridges per valve, aligned along the longitudinal axis. The obtained partial 18S rDNA of C. ellipticum did not match any sequences available in GenBank. Phylogenetic analysis showed that C. ellipticum clustered firstly with Chloromyxum legeri with robust nodal support and grouped then with urinary system of freshwater teleost-infecting Chloromyxum clade, rather than other gall bladder of freshwater teleost-infecting clade. More... »
PAGES1479-1486
http://scigraph.springernature.com/pub.10.1007/s00436-017-5424-z
DOIhttp://dx.doi.org/10.1007/s00436-017-5424-z
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1084022026
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/28324166
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Animals",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Carps",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "China",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "DNA, Ribosomal",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Fish Diseases",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gallbladder",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Lakes",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Microscopy, Electron, Scanning",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Myxozoa",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Parasitic Diseases, Animal",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Phylogeny",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Spores, Protozoan",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Urinary Bladder",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "University of Chinese Academy of Sciences",
"id": "https://www.grid.ac/institutes/grid.410726.6",
"name": [
"Fish Diseases Laboratory, State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, 430072, Wuhan, People\u2019s Republic of China",
"University of Chinese Academy of Science, 10049, Beijing, China"
],
"type": "Organization"
},
"familyName": "Zhang",
"givenName": "J. Y.",
"id": "sg:person.015273616515.35",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015273616515.35"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Chinese Academy of Sciences",
"id": "https://www.grid.ac/institutes/grid.410726.6",
"name": [
"Fish Diseases Laboratory, State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, 430072, Wuhan, People\u2019s Republic of China",
"University of Chinese Academy of Science, 10049, Beijing, China"
],
"type": "Organization"
},
"familyName": "Zhao",
"givenName": "Y. L.",
"id": "sg:person.012042234065.96",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012042234065.96"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Institute of General and Experimental Biology",
"id": "https://www.grid.ac/institutes/grid.469643.a",
"name": [
"Institute of General and Experimental Biology of Siberian Branch RAS, Ulan-Ude, Russia"
],
"type": "Organization"
},
"familyName": "Batueva",
"givenName": "M.D.",
"id": "sg:person.01311327112.28",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01311327112.28"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Chinese Academy of Sciences",
"id": "https://www.grid.ac/institutes/grid.410726.6",
"name": [
"Fish Diseases Laboratory, State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, 430072, Wuhan, People\u2019s Republic of China",
"University of Chinese Academy of Science, 10049, Beijing, China"
],
"type": "Organization"
},
"familyName": "Luo",
"givenName": "D.",
"id": "sg:person.013370730261.24",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013370730261.24"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Institute of Hydrobiology",
"id": "https://www.grid.ac/institutes/grid.429211.d",
"name": [
"Fish Diseases Laboratory, State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, 430072, Wuhan, People\u2019s Republic of China"
],
"type": "Organization"
},
"familyName": "Xing",
"givenName": "Z. F.",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Institute of Hydrobiology",
"id": "https://www.grid.ac/institutes/grid.429211.d",
"name": [
"Fish Diseases Laboratory, State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, 430072, Wuhan, People\u2019s Republic of China"
],
"type": "Organization"
},
"familyName": "Zhang",
"givenName": "Q. Q.",
"id": "sg:person.016071177115.23",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016071177115.23"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Chinese Academy of Sciences",
"id": "https://www.grid.ac/institutes/grid.410726.6",
"name": [
"Fish Diseases Laboratory, State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, 430072, Wuhan, People\u2019s Republic of China",
"University of Chinese Academy of Science, 10049, Beijing, China"
],
"type": "Organization"
},
"familyName": "Liu",
"givenName": "X. H.",
"id": "sg:person.01233615103.35",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01233615103.35"
],
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1093/bioinformatics/12.4.357",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000618136"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/molbev/mst197",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001444669"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00436-005-0057-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002516287",
"https://doi.org/10.1007/s00436-005-0057-z"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00436-005-0057-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002516287",
"https://doi.org/10.1007/s00436-005-0057-z"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2148-10-228",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010154910",
"https://doi.org/10.1186/1471-2148-10-228"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1550-7408.2003.tb00120.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012084789"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1550-7408.2003.tb00120.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012084789"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.parint.2011.10.008",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012128873"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.ijpara.2006.06.016",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013948371"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-2761.1989.tb00287.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021601957"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-2761.1989.tb00287.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021601957"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-3-319-14753-6_5",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024369846",
"https://doi.org/10.1007/978-3-319-14753-6_5"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1017/s0031182007003241",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029722696"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btg180",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036252078"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1550-7408.2010.00521.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036788443"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1550-7408.2010.00521.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036788443"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.ympev.2014.01.002",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1039689244"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/25.24.4876",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1041279110"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1645/15-726",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1041351099"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0073713",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044969843"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/molbev/msn083",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048530400"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11230-012-9380-9",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049113829",
"https://doi.org/10.1007/s11230-012-9380-9"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.14411/fp.2004.025",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1067296146"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.14411/fp.2006.001",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1067296218"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.14411/fp.2014.006",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1067296550"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1645/ge-3150.1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1068180645"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1645/ge-666r.1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1068181189"
],
"type": "CreativeWork"
}
],
"datePublished": "2017-05",
"datePublishedReg": "2017-05-01",
"description": "The traditional taxonomy of the genus Chloromyxum Mingazzini, 1890 has been intensively challenged to be paraphyletic by recent ribosomal DNA (rDNA)-based phylogenetic analysis. Undersampling to get rich sequence data to infer more scientific phylogenetic relationships makes scientists conservatively assign all non-marine elasmobranch-infecting species as Chloromyxum sensu lato. Although complex ridge pattern on the spore surface observed by scanning electron microscopy was thought to be critical for the identification of Chloromyxum species, insufficient data also prevent this ultrastructural data to be a valid taxonomic feature for this genus. It is especial for Chloromyxum species to be reported in China. Molecular and ultrastructural characteristics are yet available for all 22 Chloromyxum species recorded in China. During the investigation of the diversity of coelozoic fish myxosporeans, Chloromyxum ellipticum Li & Nie, 1973 was found to highly infect the gall bladder of Ctenopharyngodon idellus Valenciennes, 1844 in Poyang Lake watershed of Jiangxi province, Eastern China. Here, we redescribed it by the currently recommended holistic approach of combining morphological, ultrastructural, and molecular characteristics. Mature spores were found floating free in the gall bladder, but no plasmodium observed. Spores are typical freshwater teleost-infecting Chloromyxum species, spherical or subspherical in lateral view, measuring 7.7\u00a0\u00b1\u00a00.08\u00a0\u03bcm (6.9-9.1) in length, 6.3\u00a0\u00b1\u00a00.09\u00a0\u03bcm (5.6-7.6) in width, and 5.8\u00a0\u00b1\u00a00.20\u00a0\u03bcm (5.2-6.3) in thickness. Four pyriform polar capsules, located at the anterior end of the spores, were equal in size, 3.3\u00a0\u00b1\u00a00.06\u00a0\u03bcm (2.2-4.1) long and 2.1\u00a0\u00b1\u00a00.03\u00a0\u03bcm (1.7-2.5) wide. Polar filaments coiled with four to five turns. Two equal spore valves are symmetrical, with 10-16 surface extrasutural ridges per valve, aligned along the longitudinal axis. The obtained partial 18S rDNA of C. ellipticum did not match any sequences available in GenBank. Phylogenetic analysis showed that C. ellipticum clustered firstly with Chloromyxum legeri with robust nodal support and grouped then with urinary system of freshwater teleost-infecting Chloromyxum clade, rather than other gall bladder of freshwater teleost-infecting clade.",
"genre": "research_article",
"id": "sg:pub.10.1007/s00436-017-5424-z",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isFundedItemOf": [
{
"id": "sg:grant.6755996",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1096949",
"issn": [
"0932-0113",
"1432-1955"
],
"name": "Parasitology Research",
"type": "Periodical"
},
{
"issueNumber": "5",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "116"
}
],
"name": "Redescription of Chloromyxum ellipticum Li & Nie, 1973 (Myxosporea: Chloromyxidae) infecting the gall bladder of grass carp Ctenopharyngodon idellus Valenciennes, 1844, supplemented by morphological and molecular characteristics",
"pagination": "1479-1486",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"b6a64599262d430ba4cc2a65a250f38f127e64696f11b4049115636d42b4215d"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"28324166"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"8703571"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s00436-017-5424-z"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1084022026"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s00436-017-5424-z",
"https://app.dimensions.ai/details/publication/pub.1084022026"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-11T10:21",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000348_0000000348/records_54338_00000001.jsonl",
"type": "ScholarlyArticle",
"url": "https://link.springer.com/10.1007%2Fs00436-017-5424-z"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00436-017-5424-z'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00436-017-5424-z'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00436-017-5424-z'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00436-017-5424-z'
This table displays all metadata directly associated to this object as RDF triples.
244 TRIPLES
21 PREDICATES
65 URIs
34 LITERALS
22 BLANK NODES