Isolation and molecular characterization of a new vegetative MADS-box gene from Solanum tuberosum L. View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

1998-11

AUTHORS

María José Carmona, Nely Ortega, Federico Garcia-Maroto

ABSTRACT

A cDNA clone, STMADS11, encoding a new MADS-box protein was isolated from Solanum tuberosum L. (potato). Expression of STMADS11 was found in all vegetative organs of the plant, but not in floral tissues. The expression was also detected in all developmental stages, from tuber sprouts to mature plants, reaching a maximum in well-developed organs. However, the level of STMADS11 mRNA was low in tissues such as resting tuber or sprouts developed in the cold, where the metabolic activity is reduced. "In situ" hybridizations performed on leaf and stem sections showed that the STMADS11 transcript is mainly associated with vascular bundles. Cladistic analysis arising from amino acid sequence comparison revealed that STMADS11 shows the highest similarity to STMADS16, another vegetative MADS-box gene from potato, and to the previously reported "orphan" genes AGL15 and AGL17 from Arabidopsis thaliana. Possible implications of these data in relation to STMADS11 function are discussed. More... »

PAGES

181-188

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s004250050471

DOI

http://dx.doi.org/10.1007/s004250050471

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1031019821

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/9951721


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Amino Acid Sequence", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Base Sequence", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA, Plant", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA-Binding Proteins", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Gene Expression Regulation, Plant", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Homeodomain Proteins", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "MADS Domain Proteins", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Molecular Sequence Data", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Plant Proteins", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "RNA, Plant", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Sequence Homology, Amino Acid", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Solanum tuberosum", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Transcription Factors", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Technical University of Madrid", 
          "id": "https://www.grid.ac/institutes/grid.5690.a", 
          "name": [
            "Departamento de Biotecnolog\u00eda, E.T.S. Ingenieros Agr\u00f3nomos, U.P.M. Avda. Complutense s/n, E-28040 Madrid, Spain, ES"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Carmona", 
        "givenName": "Mar\u00eda Jos\u00e9", 
        "id": "sg:person.01166222042.16", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01166222042.16"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Technical University of Madrid", 
          "id": "https://www.grid.ac/institutes/grid.5690.a", 
          "name": [
            "Departamento de Biotecnolog\u00eda, E.T.S. Ingenieros Agr\u00f3nomos, U.P.M. Avda. Complutense s/n, E-28040 Madrid, Spain, ES"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Ortega", 
        "givenName": "Nely", 
        "id": "sg:person.0607330666.41", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0607330666.41"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Technical University of Madrid", 
          "id": "https://www.grid.ac/institutes/grid.5690.a", 
          "name": [
            "Departamento de Biotecnolog\u00eda, E.T.S. Ingenieros Agr\u00f3nomos, U.P.M. Avda. Complutense s/n, E-28040 Madrid, Spain, ES"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Garcia-Maroto", 
        "givenName": "Federico", 
        "id": "sg:person.01040363063.88", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01040363063.88"
        ], 
        "type": "Person"
      }
    ], 
    "datePublished": "1998-11", 
    "datePublishedReg": "1998-11-01", 
    "description": "A cDNA clone, STMADS11, encoding a new MADS-box protein was isolated from Solanum tuberosum L. (potato). Expression of STMADS11 was found in all vegetative organs of the plant, but not in floral tissues. The expression was also detected in all developmental stages, from tuber sprouts to mature plants, reaching a maximum in well-developed organs. However, the level of STMADS11 mRNA was low in tissues such as resting tuber or sprouts developed in the cold, where the metabolic activity is reduced. \"In situ\" hybridizations performed on leaf and stem sections showed that the STMADS11 transcript is mainly associated with vascular bundles. Cladistic analysis arising from amino acid sequence comparison revealed that STMADS11 shows the highest similarity to STMADS16, another vegetative MADS-box gene from potato, and to the previously reported \"orphan\" genes AGL15 and AGL17 from Arabidopsis thaliana. Possible implications of these data in relation to STMADS11 function are discussed.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1007/s004250050471", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1054035", 
        "issn": [
          "0032-0935", 
          "1432-2048"
        ], 
        "name": "Planta", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "2", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "207"
      }
    ], 
    "name": "Isolation and molecular characterization of a new vegetative MADS-box gene from Solanum tuberosum L.", 
    "pagination": "181-188", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "93c71181818d53fbd9391c6fd8e2ea68d72da8f62bbad2065a0dabe1bb9a6939"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "9951721"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "1250576"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/s004250050471"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1031019821"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/s004250050471", 
      "https://app.dimensions.ai/details/publication/pub.1031019821"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T23:24", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8693_00000513.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://link.springer.com/10.1007%2Fs004250050471"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s004250050471'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s004250050471'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s004250050471'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s004250050471'


 

This table displays all metadata directly associated to this object as RDF triples.

135 TRIPLES      20 PREDICATES      42 URIs      34 LITERALS      22 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/s004250050471 schema:about N74a22d987754401c9b013d68283c9039
2 N90a596c252aa42179ed87c7febbfb355
3 N9580df2784c04daba366c16207095dce
4 Na35a4e1e280f47a49c800628268eb070
5 Nac70dcf9aeca4d1d851f1beef6f4071c
6 Nc0103220a8974ad18b5244c96f75b28a
7 Ncb47e65235014c4ead0600d81b63b2ce
8 Ndb7c780864bc4f6baa92a12389a25c5a
9 Nddbd1ae661c04a39acae0130f391b013
10 Nea800e7816f8402d9d87f297b7281898
11 Need5f21029044417bb4584ee8b512475
12 Nf076038f98654335b673492f1ae2502b
13 Nf2a54c4d59de4710b66c45f83c1d65d2
14 anzsrc-for:06
15 anzsrc-for:0604
16 schema:author N1fdc3dc970104408818732be8956dd77
17 schema:datePublished 1998-11
18 schema:datePublishedReg 1998-11-01
19 schema:description A cDNA clone, STMADS11, encoding a new MADS-box protein was isolated from Solanum tuberosum L. (potato). Expression of STMADS11 was found in all vegetative organs of the plant, but not in floral tissues. The expression was also detected in all developmental stages, from tuber sprouts to mature plants, reaching a maximum in well-developed organs. However, the level of STMADS11 mRNA was low in tissues such as resting tuber or sprouts developed in the cold, where the metabolic activity is reduced. "In situ" hybridizations performed on leaf and stem sections showed that the STMADS11 transcript is mainly associated with vascular bundles. Cladistic analysis arising from amino acid sequence comparison revealed that STMADS11 shows the highest similarity to STMADS16, another vegetative MADS-box gene from potato, and to the previously reported "orphan" genes AGL15 and AGL17 from Arabidopsis thaliana. Possible implications of these data in relation to STMADS11 function are discussed.
20 schema:genre research_article
21 schema:inLanguage en
22 schema:isAccessibleForFree false
23 schema:isPartOf Nd2df6387376b46ef93e118d0582d7513
24 Ne073945a54bb476aa4fcbc23595821bb
25 sg:journal.1054035
26 schema:name Isolation and molecular characterization of a new vegetative MADS-box gene from Solanum tuberosum L.
27 schema:pagination 181-188
28 schema:productId N2a3802346ab64c0ab1e60e313149fae4
29 N34edea8a9356453488f59aa35d69ecf0
30 N84b56f543d3b4938b119829abc99c53d
31 Nbc2a7efa5f254e9f9914c29c587ad069
32 Ndb1627bf560347bf9b7c0e1c8798d726
33 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031019821
34 https://doi.org/10.1007/s004250050471
35 schema:sdDatePublished 2019-04-10T23:24
36 schema:sdLicense https://scigraph.springernature.com/explorer/license/
37 schema:sdPublisher N27838f46301243e08d616d8681873fdd
38 schema:url http://link.springer.com/10.1007%2Fs004250050471
39 sgo:license sg:explorer/license/
40 sgo:sdDataset articles
41 rdf:type schema:ScholarlyArticle
42 N1fdc3dc970104408818732be8956dd77 rdf:first sg:person.01166222042.16
43 rdf:rest N810a30cc277f4de18bd6a8f172ef2313
44 N27838f46301243e08d616d8681873fdd schema:name Springer Nature - SN SciGraph project
45 rdf:type schema:Organization
46 N2a3802346ab64c0ab1e60e313149fae4 schema:name nlm_unique_id
47 schema:value 1250576
48 rdf:type schema:PropertyValue
49 N34edea8a9356453488f59aa35d69ecf0 schema:name doi
50 schema:value 10.1007/s004250050471
51 rdf:type schema:PropertyValue
52 N5eb8c4fa3f8c49d4ad78f09c68ce386e rdf:first sg:person.01040363063.88
53 rdf:rest rdf:nil
54 N74a22d987754401c9b013d68283c9039 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
55 schema:name Plant Proteins
56 rdf:type schema:DefinedTerm
57 N810a30cc277f4de18bd6a8f172ef2313 rdf:first sg:person.0607330666.41
58 rdf:rest N5eb8c4fa3f8c49d4ad78f09c68ce386e
59 N84b56f543d3b4938b119829abc99c53d schema:name dimensions_id
60 schema:value pub.1031019821
61 rdf:type schema:PropertyValue
62 N90a596c252aa42179ed87c7febbfb355 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
63 schema:name Base Sequence
64 rdf:type schema:DefinedTerm
65 N9580df2784c04daba366c16207095dce schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
66 schema:name DNA, Plant
67 rdf:type schema:DefinedTerm
68 Na35a4e1e280f47a49c800628268eb070 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
69 schema:name Solanum tuberosum
70 rdf:type schema:DefinedTerm
71 Nac70dcf9aeca4d1d851f1beef6f4071c schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
72 schema:name Molecular Sequence Data
73 rdf:type schema:DefinedTerm
74 Nbc2a7efa5f254e9f9914c29c587ad069 schema:name pubmed_id
75 schema:value 9951721
76 rdf:type schema:PropertyValue
77 Nc0103220a8974ad18b5244c96f75b28a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
78 schema:name Amino Acid Sequence
79 rdf:type schema:DefinedTerm
80 Ncb47e65235014c4ead0600d81b63b2ce schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
81 schema:name Homeodomain Proteins
82 rdf:type schema:DefinedTerm
83 Nd2df6387376b46ef93e118d0582d7513 schema:volumeNumber 207
84 rdf:type schema:PublicationVolume
85 Ndb1627bf560347bf9b7c0e1c8798d726 schema:name readcube_id
86 schema:value 93c71181818d53fbd9391c6fd8e2ea68d72da8f62bbad2065a0dabe1bb9a6939
87 rdf:type schema:PropertyValue
88 Ndb7c780864bc4f6baa92a12389a25c5a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
89 schema:name DNA-Binding Proteins
90 rdf:type schema:DefinedTerm
91 Nddbd1ae661c04a39acae0130f391b013 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
92 schema:name MADS Domain Proteins
93 rdf:type schema:DefinedTerm
94 Ne073945a54bb476aa4fcbc23595821bb schema:issueNumber 2
95 rdf:type schema:PublicationIssue
96 Nea800e7816f8402d9d87f297b7281898 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
97 schema:name Gene Expression Regulation, Plant
98 rdf:type schema:DefinedTerm
99 Need5f21029044417bb4584ee8b512475 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
100 schema:name RNA, Plant
101 rdf:type schema:DefinedTerm
102 Nf076038f98654335b673492f1ae2502b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
103 schema:name Transcription Factors
104 rdf:type schema:DefinedTerm
105 Nf2a54c4d59de4710b66c45f83c1d65d2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
106 schema:name Sequence Homology, Amino Acid
107 rdf:type schema:DefinedTerm
108 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
109 schema:name Biological Sciences
110 rdf:type schema:DefinedTerm
111 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
112 schema:name Genetics
113 rdf:type schema:DefinedTerm
114 sg:journal.1054035 schema:issn 0032-0935
115 1432-2048
116 schema:name Planta
117 rdf:type schema:Periodical
118 sg:person.01040363063.88 schema:affiliation https://www.grid.ac/institutes/grid.5690.a
119 schema:familyName Garcia-Maroto
120 schema:givenName Federico
121 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01040363063.88
122 rdf:type schema:Person
123 sg:person.01166222042.16 schema:affiliation https://www.grid.ac/institutes/grid.5690.a
124 schema:familyName Carmona
125 schema:givenName María José
126 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01166222042.16
127 rdf:type schema:Person
128 sg:person.0607330666.41 schema:affiliation https://www.grid.ac/institutes/grid.5690.a
129 schema:familyName Ortega
130 schema:givenName Nely
131 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0607330666.41
132 rdf:type schema:Person
133 https://www.grid.ac/institutes/grid.5690.a schema:alternateName Technical University of Madrid
134 schema:name Departamento de Biotecnología, E.T.S. Ingenieros Agrónomos, U.P.M. Avda. Complutense s/n, E-28040 Madrid, Spain, ES
135 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...