Ontology type: schema:ScholarlyArticle
2013-01
AUTHORSSebastian Malkusch, Walter Muranyi, Barbara Müller, Hans-Georg Kräusslich, Mike Heilemann
ABSTRACTWe apply single-molecule super-resolution microscopy and coordinate-based cluster analysis to extract information on the distribution and on the morphology and size of clusters of the human immunodeficiency virus (HIV-1) Gag polyprotein in fixed cells. Three different patterns of Gag distribution could be distinguished. A major type of assembly observed was in accordance with previous electron microscopy analyses revealing ~140 nm-sized HIV-1 buds at the plasma membrane of virus-producing cells. The distribution of Gag molecules in the 2D projection at these sites was consistent with a semi-spherical 3D assembly. We compared different methods of cluster analysis and demonstrated that we can reliably distinguish different distribution patterns of the Gag polyprotein. These methods were applied to extract information on the properties of the different Gag clusters. More... »
PAGES173-179
http://scigraph.springernature.com/pub.10.1007/s00418-012-1014-4
DOIhttp://dx.doi.org/10.1007/s00418-012-1014-4
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1027347230
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/22910843
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/1108",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Medical Microbiology",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/11",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Medical and Health Sciences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Algorithms",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cell Line",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cell Membrane",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cluster Analysis",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "HIV-1",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Humans",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Image Processing, Computer-Assisted",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Microscopy, Fluorescence",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Transfection",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Virion",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Virus Assembly",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "gag Gene Products, Human Immunodeficiency Virus",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "University of W\u00fcrzburg",
"id": "https://www.grid.ac/institutes/grid.8379.5",
"name": [
"Biotechnology and Biophysics, Julius-Maximilians-University W\u00fcrzburg, W\u00fcrzburg, Germany"
],
"type": "Organization"
},
"familyName": "Malkusch",
"givenName": "Sebastian",
"id": "sg:person.01055674730.28",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01055674730.28"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University Hospital Heidelberg",
"id": "https://www.grid.ac/institutes/grid.5253.1",
"name": [
"Department of Infectious Diseases, Virology, University Hospital Heidelberg, Heidelberg, Germany"
],
"type": "Organization"
},
"familyName": "Muranyi",
"givenName": "Walter",
"id": "sg:person.0726215162.01",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0726215162.01"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University Hospital Heidelberg",
"id": "https://www.grid.ac/institutes/grid.5253.1",
"name": [
"Department of Infectious Diseases, Virology, University Hospital Heidelberg, Heidelberg, Germany"
],
"type": "Organization"
},
"familyName": "M\u00fcller",
"givenName": "Barbara",
"id": "sg:person.01352502372.23",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01352502372.23"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University Hospital Heidelberg",
"id": "https://www.grid.ac/institutes/grid.5253.1",
"name": [
"Department of Infectious Diseases, Virology, University Hospital Heidelberg, Heidelberg, Germany"
],
"type": "Organization"
},
"familyName": "Kr\u00e4usslich",
"givenName": "Hans-Georg",
"id": "sg:person.0731120455.54",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0731120455.54"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Heidelberg University",
"id": "https://www.grid.ac/institutes/grid.7700.0",
"name": [
"Biotechnology and Biophysics, Julius-Maximilians-University W\u00fcrzburg, W\u00fcrzburg, Germany",
"BIOQUANT Centre, University of Heidelberg, Heidelberg, Germany"
],
"type": "Organization"
},
"familyName": "Heilemann",
"givenName": "Mike",
"id": "sg:person.0647736207.48",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0647736207.48"
],
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1016/j.bpj.2009.05.039",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000422117"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00418-004-0685-x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001579114",
"https://doi.org/10.1007/s00418-004-0685-x"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.virol.2006.10.005",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002603735"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2217/fvl.09.4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006166421"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.1447",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006532083",
"https://doi.org/10.1038/nmeth.1447"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.1447",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006532083",
"https://doi.org/10.1038/nmeth.1447"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.0908971106",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008922546"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.chom.2008.10.013",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013146445"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/anie.200802376",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013666545"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1083/jcb.201002018",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014348634"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth929",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018882864",
"https://doi.org/10.1038/nmeth929"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth929",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018882864",
"https://doi.org/10.1038/nmeth929"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.jsb.2008.08.002",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021036034"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.3390/molecules16043106",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021694608"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.3390/molecules16043106",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021694608"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.1841",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021813707",
"https://doi.org/10.1038/nmeth.1841"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1127344",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022108219"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.jmb.2011.04.062",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023662921"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.ppat.1002456",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024709006"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-2818.2009.03287.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024721771"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-2818.2009.03287.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024721771"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.0504812102",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028919973"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/anie.200902073",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029543695"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/anie.200902073",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029543695"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/jvi.74.18.8670-8679.2000",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030261327"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.jbiotec.2010.03.012",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030868749"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/jvi.78.19.10803-10813.2004",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032220021"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0022007",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033641069"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nprot.2011.336",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034803646",
"https://doi.org/10.1038/nprot.2011.336"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1038/sj.emboj.7601664",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035192663"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/jbio.200900089",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036042230"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/jbio.200900089",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036042230"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature06998",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037721396",
"https://doi.org/10.1038/nature06998"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.1176",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038882342",
"https://doi.org/10.1038/nmeth.1176"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ni.2049",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040784844",
"https://doi.org/10.1038/ni.2049"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pbio.0040435",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1043122587"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.1489",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044984482",
"https://doi.org/10.1038/nmeth.1489"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.1489",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044984482",
"https://doi.org/10.1038/nmeth.1489"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.0903535106",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045549529"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.jmb.2011.04.021",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046356719"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3236356",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050015079"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.ppat.1000652",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051044203"
],
"type": "CreativeWork"
}
],
"datePublished": "2013-01",
"datePublishedReg": "2013-01-01",
"description": "We apply single-molecule super-resolution microscopy and coordinate-based cluster analysis to extract information on the distribution and on the morphology and size of clusters of the human immunodeficiency virus (HIV-1) Gag polyprotein in fixed cells. Three different patterns of Gag distribution could be distinguished. A major type of assembly observed was in accordance with previous electron microscopy analyses revealing ~140\u00a0nm-sized HIV-1 buds at the plasma membrane of virus-producing cells. The distribution of Gag molecules in the 2D projection at these sites was consistent with a semi-spherical 3D assembly. We compared different methods of cluster analysis and demonstrated that we can reliably distinguish different distribution patterns of the Gag polyprotein. These methods were applied to extract information on the properties of the different Gag clusters.",
"genre": "research_article",
"id": "sg:pub.10.1007/s00418-012-1014-4",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1294817",
"issn": [
"0948-6143",
"1432-119X"
],
"name": "Histochemistry and Cell Biology",
"type": "Periodical"
},
{
"issueNumber": "1",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "139"
}
],
"name": "Single-molecule coordinate-based analysis of the morphology of HIV-1 assembly sites with near-molecular spatial resolution",
"pagination": "173-179",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"82460bddf03fc34ae4d84d40123e49ac9db018d82c851e00fafe6b60bbe12a9d"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"22910843"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"9506663"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s00418-012-1014-4"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1027347230"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s00418-012-1014-4",
"https://app.dimensions.ai/details/publication/pub.1027347230"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-11T02:01",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8700_00000513.jsonl",
"type": "ScholarlyArticle",
"url": "http://link.springer.com/10.1007%2Fs00418-012-1014-4"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00418-012-1014-4'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00418-012-1014-4'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00418-012-1014-4'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00418-012-1014-4'
This table displays all metadata directly associated to this object as RDF triples.
266 TRIPLES
21 PREDICATES
76 URIs
33 LITERALS
21 BLANK NODES