Ancestry inference of 96 population samples using microhaplotypes View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2018-05

AUTHORS

Ozlem Bulbul, Andrew J. Pakstis, Usha Soundararajan, Cemal Gurkan, Jane E. Brissenden, Janet M. Roscoe, Baigalmaa Evsanaa, Ariunaa Togtokh, Peristera Paschou, Elena L. Grigorenko, David Gurwitz, Sharon Wootton, Robert Lagace, Joseph Chang, William C. Speed, Kenneth K. Kidd

ABSTRACT

Microhaplotypes have become a new type of forensic marker with a great ability to identify and deconvolute mixtures because massively parallel sequencing (MPS) allows the alleles (haplotypes) of the multi-SNP loci to be determined directly for an individual. As originally defined, a microhaplotype locus is a short segment of DNA with two or more SNPs defining three or more haplotypes. The length is short enough, less than about 300 bp, that the read length of current MPS technology can produce a phase-known sequence of each chromosome of an individual. As part of the discovery phase of our studies, data on 130 microhaplotype loci with estimates of haplotype frequency data on 83 populations have been published. To provide a better picture of global allele frequency variation, we have now tested 13 more populations for 65 of the microhaplotype loci from among those with higher levels of inter-population gene frequency variation, including 8 loci not previously published. These loci provide clear distinctions among 6 biogeographic regions and provide some information distinguishing up to 10 clusters of populations. More... »

PAGES

703-711

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s00414-017-1748-6

DOI

http://dx.doi.org/10.1007/s00414-017-1748-6

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1099689068

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/29248957


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Gene Frequency", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genetics, Population", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Haplotypes", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "High-Throughput Nucleotide Sequencing", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Humans", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Polymorphism, Single Nucleotide", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Principal Component Analysis", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Istanbul University", 
          "id": "https://www.grid.ac/institutes/grid.9601.e", 
          "name": [
            "Institute of Forensic Science, Istanbul University, 34098, Istanbul, Turkey"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Bulbul", 
        "givenName": "Ozlem", 
        "id": "sg:person.01121431376.47", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01121431376.47"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Yale University", 
          "id": "https://www.grid.ac/institutes/grid.47100.32", 
          "name": [
            "Department of Genetics, Yale University School of Medicine, 333 Cedar Street, 06520-8005, New Haven, CT, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Pakstis", 
        "givenName": "Andrew J.", 
        "id": "sg:person.01147776341.54", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01147776341.54"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Yale University", 
          "id": "https://www.grid.ac/institutes/grid.47100.32", 
          "name": [
            "Department of Genetics, Yale University School of Medicine, 333 Cedar Street, 06520-8005, New Haven, CT, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Soundararajan", 
        "givenName": "Usha", 
        "id": "sg:person.01016526707.68", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01016526707.68"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Turkish Cypriot DNA Laboratory, Committee on Missing Persons in Cyprus Turkish Cypriot Member Office, 99010 (North Cyprus), Nicosia, Turkey", 
            "Dr. Faz\u0131l K\u00fc\u00e7\u00fck Faculty of Medicine, Eastern Mediterranean University, 99628 (North Cyprus), Famagusta, Turkey"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Gurkan", 
        "givenName": "Cemal", 
        "id": "sg:person.01267456242.03", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01267456242.03"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Toronto", 
          "id": "https://www.grid.ac/institutes/grid.17063.33", 
          "name": [
            "Department of Medicine, University of Toronto, M5S, Toronto, ON, Canada"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Brissenden", 
        "givenName": "Jane E.", 
        "id": "sg:person.01216262521.80", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01216262521.80"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "The Scarborough Hospital", 
          "id": "https://www.grid.ac/institutes/grid.460766.5", 
          "name": [
            "Department of Medicine, University of Toronto, M5S, Toronto, ON, Canada", 
            "Department of Medicine, The Scarborough Hospital, M1P 2V5, Toronto, ON, Canada"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Roscoe", 
        "givenName": "Janet M.", 
        "id": "sg:person.01000633504.25", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01000633504.25"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Mongolian National University of Medical Sciences", 
          "id": "https://www.grid.ac/institutes/grid.444534.6", 
          "name": [
            "Department of Nephrology, Mongolian National University of Medical Sciences, Khoroo 1, Ulaanbataar, Mongolia"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Evsanaa", 
        "givenName": "Baigalmaa", 
        "id": "sg:person.01267076256.38", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01267076256.38"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Mongolian National University of Medical Sciences", 
          "id": "https://www.grid.ac/institutes/grid.444534.6", 
          "name": [
            "Department of Nephrology, Mongolian National University of Medical Sciences, Khoroo 1, Ulaanbataar, Mongolia"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Togtokh", 
        "givenName": "Ariunaa", 
        "id": "sg:person.01156317623.16", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01156317623.16"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Purdue University", 
          "id": "https://www.grid.ac/institutes/grid.169077.e", 
          "name": [
            "Department of Biological Sciences, Purdue University, 47907, West Lafayette, IN, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Paschou", 
        "givenName": "Peristera", 
        "id": "sg:person.01140305107.04", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01140305107.04"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Saint Petersburg State University", 
          "id": "https://www.grid.ac/institutes/grid.15447.33", 
          "name": [
            "Developmental Cognitive Neuroscience, University of Houston, 77204, Houston, TX, USA", 
            "Laboratory of Translational Sciences of Human Development, St. Petersburg University, 199034, St. Petersburg, Russian Federation"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Grigorenko", 
        "givenName": "Elena L.", 
        "id": "sg:person.01207514351.67", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01207514351.67"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Tel Aviv University", 
          "id": "https://www.grid.ac/institutes/grid.12136.37", 
          "name": [
            "Department of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, 69978, Tel Aviv, Israel"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Gurwitz", 
        "givenName": "David", 
        "id": "sg:person.0756525760.20", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0756525760.20"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Human Identification Group, ThermoFisher Scientific, 180 Oyster Point Blvd, 94080, South San Francisco, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Wootton", 
        "givenName": "Sharon", 
        "id": "sg:person.01060363051.36", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01060363051.36"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Human Identification Group, ThermoFisher Scientific, 180 Oyster Point Blvd, 94080, South San Francisco, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Lagace", 
        "givenName": "Robert", 
        "id": "sg:person.01032357267.38", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01032357267.38"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Human Identification Group, ThermoFisher Scientific, 180 Oyster Point Blvd, 94080, South San Francisco, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Chang", 
        "givenName": "Joseph", 
        "id": "sg:person.01351534711.37", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01351534711.37"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Yale University", 
          "id": "https://www.grid.ac/institutes/grid.47100.32", 
          "name": [
            "Department of Genetics, Yale University School of Medicine, 333 Cedar Street, 06520-8005, New Haven, CT, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Speed", 
        "givenName": "William C.", 
        "id": "sg:person.01306046677.16", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01306046677.16"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Yale University", 
          "id": "https://www.grid.ac/institutes/grid.47100.32", 
          "name": [
            "Department of Genetics, Yale University School of Medicine, 333 Cedar Street, 06520-8005, New Haven, CT, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kidd", 
        "givenName": "Kenneth K.", 
        "id": "sg:person.01264224741.31", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01264224741.31"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1007/s00414-016-1524-z", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1009939192", 
          "https://doi.org/10.1007/s00414-016-1524-z"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00414-016-1524-z", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1009939192", 
          "https://doi.org/10.1007/s00414-016-1524-z"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.fsigss.2015.12.004", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1009983408"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/s13323-014-0018-3", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011942856", 
          "https://doi.org/10.1186/s13323-014-0018-3"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/s13323-014-0018-3", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011942856", 
          "https://doi.org/10.1186/s13323-014-0018-3"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/ajpa.10094", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020274624"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature15393", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021812064", 
          "https://doi.org/10.1038/nature15393"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkr924", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023763915"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.fsigss.2013.10.063", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025277938"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1086/319501", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1027413555"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/s40246-016-0078-y", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1039848840", 
          "https://doi.org/10.1186/s40246-016-0078-y"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/s40246-016-0078-y", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1039848840", 
          "https://doi.org/10.1186/s40246-016-0078-y"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.fsigen.2016.04.010", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1040088498"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.fsigen.2014.06.014", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043534214"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.13110/humanbiology.87.1.0005", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047141092"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.13110/humanbiology.87.2.0005", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049425134"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1086/380416", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1050483221"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1086/428594", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1058715738"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1074647594", 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.fsigen.2017.03.014", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1084076096"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2018-05", 
    "datePublishedReg": "2018-05-01", 
    "description": "Microhaplotypes have become a new type of forensic marker with a great ability to identify and deconvolute mixtures because massively parallel sequencing (MPS) allows the alleles (haplotypes) of the multi-SNP loci to be determined directly for an individual. As originally defined, a microhaplotype locus is a short segment of DNA with two or more SNPs defining three or more haplotypes. The length is short enough, less than about 300 bp, that the read length of current MPS technology can produce a phase-known sequence of each chromosome of an individual. As part of the discovery phase of our studies, data on 130 microhaplotype loci with estimates of haplotype frequency data on 83 populations have been published. To provide a better picture of global allele frequency variation, we have now tested 13 more populations for 65 of the microhaplotype loci from among those with higher levels of inter-population gene frequency variation, including 8 loci not previously published. These loci provide clear distinctions among 6 biogeographic regions and provide some information distinguishing up to 10 clusters of populations.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1007/s00414-017-1748-6", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": true, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.7604263", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.7603876", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.7604637", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1013672", 
        "issn": [
          "0937-9827", 
          "1437-1596"
        ], 
        "name": "International Journal of Legal Medicine", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "3", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "132"
      }
    ], 
    "name": "Ancestry inference of 96 population samples using microhaplotypes", 
    "pagination": "703-711", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "90093e742059adee51d832e2ea739197108abe23df015fbd8125cd2205b43ec5"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "29248957"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "9101456"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/s00414-017-1748-6"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1099689068"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/s00414-017-1748-6", 
      "https://app.dimensions.ai/details/publication/pub.1099689068"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T15:14", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8663_00000603.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://link.springer.com/10.1007/s00414-017-1748-6"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00414-017-1748-6'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00414-017-1748-6'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00414-017-1748-6'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00414-017-1748-6'


 

This table displays all metadata directly associated to this object as RDF triples.

294 TRIPLES      21 PREDICATES      53 URIs      28 LITERALS      16 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/s00414-017-1748-6 schema:about N0f6dd04af1864b5d9e9d3ff15ab17e6d
2 N3abf3784f6cc4dfe8454d3923ae5d33b
3 N5a73cdcf5f24443eb46a141c1958e7f9
4 N5d0b313b723d40478210f11a70690508
5 N6239a1a98e5d4945be329c5bf48fa15d
6 Nb61e8080928247e18dc2430e07fc85f1
7 Nf014239c78174da1b7caeb98b9659012
8 anzsrc-for:06
9 anzsrc-for:0604
10 schema:author N0bdf8666b85f48c185df7722d05309ac
11 schema:citation sg:pub.10.1007/s00414-016-1524-z
12 sg:pub.10.1038/nature15393
13 sg:pub.10.1186/s13323-014-0018-3
14 sg:pub.10.1186/s40246-016-0078-y
15 https://app.dimensions.ai/details/publication/pub.1074647594
16 https://doi.org/10.1002/ajpa.10094
17 https://doi.org/10.1016/j.fsigen.2014.06.014
18 https://doi.org/10.1016/j.fsigen.2016.04.010
19 https://doi.org/10.1016/j.fsigen.2017.03.014
20 https://doi.org/10.1016/j.fsigss.2013.10.063
21 https://doi.org/10.1016/j.fsigss.2015.12.004
22 https://doi.org/10.1086/319501
23 https://doi.org/10.1086/380416
24 https://doi.org/10.1086/428594
25 https://doi.org/10.1093/nar/gkr924
26 https://doi.org/10.13110/humanbiology.87.1.0005
27 https://doi.org/10.13110/humanbiology.87.2.0005
28 schema:datePublished 2018-05
29 schema:datePublishedReg 2018-05-01
30 schema:description Microhaplotypes have become a new type of forensic marker with a great ability to identify and deconvolute mixtures because massively parallel sequencing (MPS) allows the alleles (haplotypes) of the multi-SNP loci to be determined directly for an individual. As originally defined, a microhaplotype locus is a short segment of DNA with two or more SNPs defining three or more haplotypes. The length is short enough, less than about 300 bp, that the read length of current MPS technology can produce a phase-known sequence of each chromosome of an individual. As part of the discovery phase of our studies, data on 130 microhaplotype loci with estimates of haplotype frequency data on 83 populations have been published. To provide a better picture of global allele frequency variation, we have now tested 13 more populations for 65 of the microhaplotype loci from among those with higher levels of inter-population gene frequency variation, including 8 loci not previously published. These loci provide clear distinctions among 6 biogeographic regions and provide some information distinguishing up to 10 clusters of populations.
31 schema:genre research_article
32 schema:inLanguage en
33 schema:isAccessibleForFree true
34 schema:isPartOf N7dcb0847496b4488b5599b1043d59e2d
35 Nd0e99c6854b647ce8086ffea2926e2d2
36 sg:journal.1013672
37 schema:name Ancestry inference of 96 population samples using microhaplotypes
38 schema:pagination 703-711
39 schema:productId N20beb1d2e50c431da177300346bca49d
40 N44d6d565ae754967a37c662212159897
41 N78c775b4c08d431cb82fb08fcb2b7ca7
42 N7b3cf2041a644dfc97ca9bc37e6467c5
43 N93de26de9010448593794212dc7058e7
44 schema:sameAs https://app.dimensions.ai/details/publication/pub.1099689068
45 https://doi.org/10.1007/s00414-017-1748-6
46 schema:sdDatePublished 2019-04-10T15:14
47 schema:sdLicense https://scigraph.springernature.com/explorer/license/
48 schema:sdPublisher Na9459117e81c46a582f9ba748c92a2b6
49 schema:url http://link.springer.com/10.1007/s00414-017-1748-6
50 sgo:license sg:explorer/license/
51 sgo:sdDataset articles
52 rdf:type schema:ScholarlyArticle
53 N0754fd241791403faae983d1aa6254c8 rdf:first sg:person.01140305107.04
54 rdf:rest N974e2c58966643639c3381d849e30d8b
55 N0bdf8666b85f48c185df7722d05309ac rdf:first sg:person.01121431376.47
56 rdf:rest N82020350e7c340a394d2765bfe7a74a2
57 N0f45d4505c594b10969cd5e0006e5c79 rdf:first sg:person.01267456242.03
58 rdf:rest N3bf20a513a6b4ebc94c9b34a61396222
59 N0f6dd04af1864b5d9e9d3ff15ab17e6d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
60 schema:name High-Throughput Nucleotide Sequencing
61 rdf:type schema:DefinedTerm
62 N15c4e20e2f2a4aed96d2f73f3aac06c0 rdf:first sg:person.01264224741.31
63 rdf:rest rdf:nil
64 N20beb1d2e50c431da177300346bca49d schema:name nlm_unique_id
65 schema:value 9101456
66 rdf:type schema:PropertyValue
67 N3583a904df3e4c0db4c91956db48d6db rdf:first sg:person.01060363051.36
68 rdf:rest Nf783331a409f423284ce05d023da066e
69 N3957650b0cd24174a9eac05c7e3f2079 rdf:first sg:person.0756525760.20
70 rdf:rest N3583a904df3e4c0db4c91956db48d6db
71 N3abf3784f6cc4dfe8454d3923ae5d33b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
72 schema:name Humans
73 rdf:type schema:DefinedTerm
74 N3bf20a513a6b4ebc94c9b34a61396222 rdf:first sg:person.01216262521.80
75 rdf:rest Nfa4f28cf77a7416eb62508b8b7bddea5
76 N42cf862a84d3403e9ac5a497d0ae16e3 schema:name Dr. Fazıl Küçük Faculty of Medicine, Eastern Mediterranean University, 99628 (North Cyprus), Famagusta, Turkey
77 Turkish Cypriot DNA Laboratory, Committee on Missing Persons in Cyprus Turkish Cypriot Member Office, 99010 (North Cyprus), Nicosia, Turkey
78 rdf:type schema:Organization
79 N44d6d565ae754967a37c662212159897 schema:name doi
80 schema:value 10.1007/s00414-017-1748-6
81 rdf:type schema:PropertyValue
82 N5a73cdcf5f24443eb46a141c1958e7f9 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
83 schema:name Haplotypes
84 rdf:type schema:DefinedTerm
85 N5d0b313b723d40478210f11a70690508 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
86 schema:name Genetics, Population
87 rdf:type schema:DefinedTerm
88 N6239a1a98e5d4945be329c5bf48fa15d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
89 schema:name Principal Component Analysis
90 rdf:type schema:DefinedTerm
91 N78c775b4c08d431cb82fb08fcb2b7ca7 schema:name dimensions_id
92 schema:value pub.1099689068
93 rdf:type schema:PropertyValue
94 N7b3cf2041a644dfc97ca9bc37e6467c5 schema:name readcube_id
95 schema:value 90093e742059adee51d832e2ea739197108abe23df015fbd8125cd2205b43ec5
96 rdf:type schema:PropertyValue
97 N7dcb0847496b4488b5599b1043d59e2d schema:issueNumber 3
98 rdf:type schema:PublicationIssue
99 N82020350e7c340a394d2765bfe7a74a2 rdf:first sg:person.01147776341.54
100 rdf:rest Ne4b019f927364714a74c13f89729b4c1
101 N93de26de9010448593794212dc7058e7 schema:name pubmed_id
102 schema:value 29248957
103 rdf:type schema:PropertyValue
104 N974e2c58966643639c3381d849e30d8b rdf:first sg:person.01207514351.67
105 rdf:rest N3957650b0cd24174a9eac05c7e3f2079
106 N974f79610a7847febea41b84e9b3de0d rdf:first sg:person.01306046677.16
107 rdf:rest N15c4e20e2f2a4aed96d2f73f3aac06c0
108 Na9459117e81c46a582f9ba748c92a2b6 schema:name Springer Nature - SN SciGraph project
109 rdf:type schema:Organization
110 Nabd123fd7b3740e389ab3342a82fddaa rdf:first sg:person.01351534711.37
111 rdf:rest N974f79610a7847febea41b84e9b3de0d
112 Nad32ac32c32e41c2975f53d73941adc8 schema:name Human Identification Group, ThermoFisher Scientific, 180 Oyster Point Blvd, 94080, South San Francisco, CA, USA
113 rdf:type schema:Organization
114 Nb61e8080928247e18dc2430e07fc85f1 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
115 schema:name Gene Frequency
116 rdf:type schema:DefinedTerm
117 Nc9bf70f70e8d4963b4e509e91d231804 rdf:first sg:person.01267076256.38
118 rdf:rest Nfa9318f0113249228c058ab12809a9dd
119 Nd0e99c6854b647ce8086ffea2926e2d2 schema:volumeNumber 132
120 rdf:type schema:PublicationVolume
121 Ne4b019f927364714a74c13f89729b4c1 rdf:first sg:person.01016526707.68
122 rdf:rest N0f45d4505c594b10969cd5e0006e5c79
123 Nf014239c78174da1b7caeb98b9659012 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
124 schema:name Polymorphism, Single Nucleotide
125 rdf:type schema:DefinedTerm
126 Nf5174dfab4134b61a39065f47c48e03e schema:name Human Identification Group, ThermoFisher Scientific, 180 Oyster Point Blvd, 94080, South San Francisco, CA, USA
127 rdf:type schema:Organization
128 Nf783331a409f423284ce05d023da066e rdf:first sg:person.01032357267.38
129 rdf:rest Nabd123fd7b3740e389ab3342a82fddaa
130 Nfa4f28cf77a7416eb62508b8b7bddea5 rdf:first sg:person.01000633504.25
131 rdf:rest Nc9bf70f70e8d4963b4e509e91d231804
132 Nfa9318f0113249228c058ab12809a9dd rdf:first sg:person.01156317623.16
133 rdf:rest N0754fd241791403faae983d1aa6254c8
134 Nfd036d8d3d3f4326aee46ff46ceb155a schema:name Human Identification Group, ThermoFisher Scientific, 180 Oyster Point Blvd, 94080, South San Francisco, CA, USA
135 rdf:type schema:Organization
136 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
137 schema:name Biological Sciences
138 rdf:type schema:DefinedTerm
139 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
140 schema:name Genetics
141 rdf:type schema:DefinedTerm
142 sg:grant.7603876 http://pending.schema.org/fundedItem sg:pub.10.1007/s00414-017-1748-6
143 rdf:type schema:MonetaryGrant
144 sg:grant.7604263 http://pending.schema.org/fundedItem sg:pub.10.1007/s00414-017-1748-6
145 rdf:type schema:MonetaryGrant
146 sg:grant.7604637 http://pending.schema.org/fundedItem sg:pub.10.1007/s00414-017-1748-6
147 rdf:type schema:MonetaryGrant
148 sg:journal.1013672 schema:issn 0937-9827
149 1437-1596
150 schema:name International Journal of Legal Medicine
151 rdf:type schema:Periodical
152 sg:person.01000633504.25 schema:affiliation https://www.grid.ac/institutes/grid.460766.5
153 schema:familyName Roscoe
154 schema:givenName Janet M.
155 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01000633504.25
156 rdf:type schema:Person
157 sg:person.01016526707.68 schema:affiliation https://www.grid.ac/institutes/grid.47100.32
158 schema:familyName Soundararajan
159 schema:givenName Usha
160 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01016526707.68
161 rdf:type schema:Person
162 sg:person.01032357267.38 schema:affiliation Nfd036d8d3d3f4326aee46ff46ceb155a
163 schema:familyName Lagace
164 schema:givenName Robert
165 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01032357267.38
166 rdf:type schema:Person
167 sg:person.01060363051.36 schema:affiliation Nf5174dfab4134b61a39065f47c48e03e
168 schema:familyName Wootton
169 schema:givenName Sharon
170 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01060363051.36
171 rdf:type schema:Person
172 sg:person.01121431376.47 schema:affiliation https://www.grid.ac/institutes/grid.9601.e
173 schema:familyName Bulbul
174 schema:givenName Ozlem
175 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01121431376.47
176 rdf:type schema:Person
177 sg:person.01140305107.04 schema:affiliation https://www.grid.ac/institutes/grid.169077.e
178 schema:familyName Paschou
179 schema:givenName Peristera
180 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01140305107.04
181 rdf:type schema:Person
182 sg:person.01147776341.54 schema:affiliation https://www.grid.ac/institutes/grid.47100.32
183 schema:familyName Pakstis
184 schema:givenName Andrew J.
185 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01147776341.54
186 rdf:type schema:Person
187 sg:person.01156317623.16 schema:affiliation https://www.grid.ac/institutes/grid.444534.6
188 schema:familyName Togtokh
189 schema:givenName Ariunaa
190 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01156317623.16
191 rdf:type schema:Person
192 sg:person.01207514351.67 schema:affiliation https://www.grid.ac/institutes/grid.15447.33
193 schema:familyName Grigorenko
194 schema:givenName Elena L.
195 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01207514351.67
196 rdf:type schema:Person
197 sg:person.01216262521.80 schema:affiliation https://www.grid.ac/institutes/grid.17063.33
198 schema:familyName Brissenden
199 schema:givenName Jane E.
200 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01216262521.80
201 rdf:type schema:Person
202 sg:person.01264224741.31 schema:affiliation https://www.grid.ac/institutes/grid.47100.32
203 schema:familyName Kidd
204 schema:givenName Kenneth K.
205 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01264224741.31
206 rdf:type schema:Person
207 sg:person.01267076256.38 schema:affiliation https://www.grid.ac/institutes/grid.444534.6
208 schema:familyName Evsanaa
209 schema:givenName Baigalmaa
210 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01267076256.38
211 rdf:type schema:Person
212 sg:person.01267456242.03 schema:affiliation N42cf862a84d3403e9ac5a497d0ae16e3
213 schema:familyName Gurkan
214 schema:givenName Cemal
215 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01267456242.03
216 rdf:type schema:Person
217 sg:person.01306046677.16 schema:affiliation https://www.grid.ac/institutes/grid.47100.32
218 schema:familyName Speed
219 schema:givenName William C.
220 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01306046677.16
221 rdf:type schema:Person
222 sg:person.01351534711.37 schema:affiliation Nad32ac32c32e41c2975f53d73941adc8
223 schema:familyName Chang
224 schema:givenName Joseph
225 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01351534711.37
226 rdf:type schema:Person
227 sg:person.0756525760.20 schema:affiliation https://www.grid.ac/institutes/grid.12136.37
228 schema:familyName Gurwitz
229 schema:givenName David
230 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0756525760.20
231 rdf:type schema:Person
232 sg:pub.10.1007/s00414-016-1524-z schema:sameAs https://app.dimensions.ai/details/publication/pub.1009939192
233 https://doi.org/10.1007/s00414-016-1524-z
234 rdf:type schema:CreativeWork
235 sg:pub.10.1038/nature15393 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021812064
236 https://doi.org/10.1038/nature15393
237 rdf:type schema:CreativeWork
238 sg:pub.10.1186/s13323-014-0018-3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011942856
239 https://doi.org/10.1186/s13323-014-0018-3
240 rdf:type schema:CreativeWork
241 sg:pub.10.1186/s40246-016-0078-y schema:sameAs https://app.dimensions.ai/details/publication/pub.1039848840
242 https://doi.org/10.1186/s40246-016-0078-y
243 rdf:type schema:CreativeWork
244 https://app.dimensions.ai/details/publication/pub.1074647594 schema:CreativeWork
245 https://doi.org/10.1002/ajpa.10094 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020274624
246 rdf:type schema:CreativeWork
247 https://doi.org/10.1016/j.fsigen.2014.06.014 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043534214
248 rdf:type schema:CreativeWork
249 https://doi.org/10.1016/j.fsigen.2016.04.010 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040088498
250 rdf:type schema:CreativeWork
251 https://doi.org/10.1016/j.fsigen.2017.03.014 schema:sameAs https://app.dimensions.ai/details/publication/pub.1084076096
252 rdf:type schema:CreativeWork
253 https://doi.org/10.1016/j.fsigss.2013.10.063 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025277938
254 rdf:type schema:CreativeWork
255 https://doi.org/10.1016/j.fsigss.2015.12.004 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009983408
256 rdf:type schema:CreativeWork
257 https://doi.org/10.1086/319501 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027413555
258 rdf:type schema:CreativeWork
259 https://doi.org/10.1086/380416 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050483221
260 rdf:type schema:CreativeWork
261 https://doi.org/10.1086/428594 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058715738
262 rdf:type schema:CreativeWork
263 https://doi.org/10.1093/nar/gkr924 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023763915
264 rdf:type schema:CreativeWork
265 https://doi.org/10.13110/humanbiology.87.1.0005 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047141092
266 rdf:type schema:CreativeWork
267 https://doi.org/10.13110/humanbiology.87.2.0005 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049425134
268 rdf:type schema:CreativeWork
269 https://www.grid.ac/institutes/grid.12136.37 schema:alternateName Tel Aviv University
270 schema:name Department of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, 69978, Tel Aviv, Israel
271 rdf:type schema:Organization
272 https://www.grid.ac/institutes/grid.15447.33 schema:alternateName Saint Petersburg State University
273 schema:name Developmental Cognitive Neuroscience, University of Houston, 77204, Houston, TX, USA
274 Laboratory of Translational Sciences of Human Development, St. Petersburg University, 199034, St. Petersburg, Russian Federation
275 rdf:type schema:Organization
276 https://www.grid.ac/institutes/grid.169077.e schema:alternateName Purdue University
277 schema:name Department of Biological Sciences, Purdue University, 47907, West Lafayette, IN, USA
278 rdf:type schema:Organization
279 https://www.grid.ac/institutes/grid.17063.33 schema:alternateName University of Toronto
280 schema:name Department of Medicine, University of Toronto, M5S, Toronto, ON, Canada
281 rdf:type schema:Organization
282 https://www.grid.ac/institutes/grid.444534.6 schema:alternateName Mongolian National University of Medical Sciences
283 schema:name Department of Nephrology, Mongolian National University of Medical Sciences, Khoroo 1, Ulaanbataar, Mongolia
284 rdf:type schema:Organization
285 https://www.grid.ac/institutes/grid.460766.5 schema:alternateName The Scarborough Hospital
286 schema:name Department of Medicine, The Scarborough Hospital, M1P 2V5, Toronto, ON, Canada
287 Department of Medicine, University of Toronto, M5S, Toronto, ON, Canada
288 rdf:type schema:Organization
289 https://www.grid.ac/institutes/grid.47100.32 schema:alternateName Yale University
290 schema:name Department of Genetics, Yale University School of Medicine, 333 Cedar Street, 06520-8005, New Haven, CT, USA
291 rdf:type schema:Organization
292 https://www.grid.ac/institutes/grid.9601.e schema:alternateName Istanbul University
293 schema:name Institute of Forensic Science, Istanbul University, 34098, Istanbul, Turkey
294 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...