Quantitative sequence characterization for repetitive DNA content in the supernumerary chromosome of the migratory locust View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2018-03

AUTHORS

Francisco J. Ruiz-Ruano, Josefa Cabrero, María Dolores López-León, Antonio Sánchez, Juan Pedro M. Camacho

ABSTRACT

Repetitive DNA is a major component in most eukaryotic genomes but is ignored in most genome sequencing projects. Here, we report the quantitative composition in repetitive DNA for a supernumerary (B) chromosome, in the migratory locust (Locusta migratoria), by Illumina sequencing of genomic DNA from B-carrying and B-lacking individuals and DNA obtained from a microdissected B chromosome, as well as the physical mapping of some elements. B chromosome DNA of 94.9% was repetitive, in high contrast with the 64.1% of standard (A) chromosomes. B chromosomes are enriched in satellite DNA (satDNA) (65.2% of B-DNA), with a single satellite (LmiSat02-176) comprising 55% of the B. Six satDNAs were visualized by FISH on the B chromosome, and the only A chromosome carrying all these satellites was autosome 9, pointing to this chromosome, along with autosome 8 (which shares histone genes with the B) as putative ancestors of the B chromosome. We found several transposable elements (TEs) showing nucleotidic variation specific to B-carrying individuals, which was also present in B-carrying transcriptomes. Remarkably, an interstitial region of the B chromosome included a 17 kb chimera composed of 29 different TEs, suggesting reiterative TE insertion in this B chromosome region. More... »

PAGES

45-57

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s00412-017-0644-7

    DOI

    http://dx.doi.org/10.1007/s00412-017-0644-7

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1091431683

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/28868580


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