Ontology type: schema:ScholarlyArticle
2019-04-04
AUTHORSSiyuan You, Min Wang, Yong Jiang, Tong Jiang, Yundan Liu, Xinxin Liu, Qingwei Yang, Hongbing Shao
ABSTRACTA novel cyanophage, S-B64, which can infect marine Synechococcus WH8102, was isolated from the coastal waters of the Yellow Sea using the liquid serial dilution method. Morphological study by transmission electron microscopy revealed that the cyanophage belongs to Podovirus. It's genome, which was completely sequenced, contains a 151,867 bp DNA molecule with a G+C content of 41.78% and 186 potential open reading frames. The functions of the genes include cyanophage structure, cyanophage packaging, DNA replication and regulation. After primary characterization, it was found that the latent period is about 3 h, and it lysed after 8 h, the burst size is about 23 virions per cell. This information will provide an important benchmark for further research on the interaction between cyanophages and their hosts. More... »
http://scigraph.springernature.com/pub.10.1007/s00284-019-01680-1
DOIhttp://dx.doi.org/10.1007/s00284-019-01680-1
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1113185221
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/30949805
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Ocean University of China",
"id": "https://www.grid.ac/institutes/grid.4422.0",
"name": [
"College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China."
],
"type": "Organization"
},
"familyName": "You",
"givenName": "Siyuan",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Ocean University of China",
"id": "https://www.grid.ac/institutes/grid.4422.0",
"name": [
"College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China. mingwang@ouc.edu.cn.",
"Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao, 266003, China. mingwang@ouc.edu.cn.",
"Key Lab of Polar Oceanography and Global Ocean Change, Ocean University of China, Qingdao, 266003, China. mingwang@ouc.edu.cn."
],
"type": "Organization"
},
"familyName": "Wang",
"givenName": "Min",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Ocean University of China",
"id": "https://www.grid.ac/institutes/grid.4422.0",
"name": [
"College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China. yongjiang@ouc.edu.cn.",
"Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao, 266003, China. yongjiang@ouc.edu.cn.",
"Key Lab of Polar Oceanography and Global Ocean Change, Ocean University of China, Qingdao, 266003, China. yongjiang@ouc.edu.cn."
],
"type": "Organization"
},
"familyName": "Jiang",
"givenName": "Yong",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Ocean University of China",
"id": "https://www.grid.ac/institutes/grid.4422.0",
"name": [
"College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China."
],
"type": "Organization"
},
"familyName": "Jiang",
"givenName": "Tong",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Ocean University of China",
"id": "https://www.grid.ac/institutes/grid.4422.0",
"name": [
"College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China."
],
"type": "Organization"
},
"familyName": "Liu",
"givenName": "Yundan",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Ocean University of China",
"id": "https://www.grid.ac/institutes/grid.4422.0",
"name": [
"College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China."
],
"type": "Organization"
},
"familyName": "Liu",
"givenName": "Xinxin",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Ocean University of China",
"id": "https://www.grid.ac/institutes/grid.4422.0",
"name": [
"College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China."
],
"type": "Organization"
},
"familyName": "Yang",
"givenName": "Qingwei",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Ocean University of China",
"id": "https://www.grid.ac/institutes/grid.4422.0",
"name": [
"College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China."
],
"type": "Organization"
},
"familyName": "Shao",
"givenName": "Hongbing",
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1073/pnas.1115467109",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006985612"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s12250-013-3333-6",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011228414",
"https://doi.org/10.1007/s12250-013-3333-6"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aem.00349-06",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026719634"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/1462-2920.12053",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027587448"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature06130",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029540629",
"https://doi.org/10.1038/nature06130"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s12560-015-9218-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030123437",
"https://doi.org/10.1007/s12560-015-9218-0"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0168-6445(03)00016-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033195329"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aem.00878-14",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038726643"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00284-012-0264-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038744543",
"https://doi.org/10.1007/s00284-012-0264-7"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature04111",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042267725",
"https://doi.org/10.1038/nature04111"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature04111",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042267725",
"https://doi.org/10.1038/nature04111"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature04111",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042267725",
"https://doi.org/10.1038/nature04111"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature04111",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042267725",
"https://doi.org/10.1038/nature04111"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature01929",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1043553948",
"https://doi.org/10.1038/nature01929"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature01929",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1043553948",
"https://doi.org/10.1038/nature01929"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aem.67.7.3285-3290.2001",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047738747"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aem.02517-05",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049939242"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.3354/meps092099",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1071169542"
],
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1077159134",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1077159151",
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/srep44176",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1084132074",
"https://doi.org/10.1038/srep44176"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ismej.2017.159",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1092193044",
"https://doi.org/10.1038/ismej.2017.159"
],
"type": "CreativeWork"
}
],
"datePublished": "2019-04-04",
"datePublishedReg": "2019-04-04",
"description": "A novel cyanophage, S-B64, which can infect marine Synechococcus WH8102, was isolated from the coastal waters of the Yellow Sea using the liquid serial dilution method. Morphological study by transmission electron microscopy revealed that the cyanophage belongs to Podovirus. It's genome, which was completely sequenced, contains a 151,867\u00a0bp DNA molecule with a G+C content of 41.78% and 186 potential open reading frames. The functions of the genes include cyanophage structure, cyanophage packaging, DNA replication and regulation. After primary characterization, it was found that the latent period is about 3\u00a0h, and it lysed after 8\u00a0h, the burst size is about 23 virions per cell. This information will provide an important benchmark for further research on the interaction between cyanophages and their hosts.",
"genre": "research_article",
"id": "sg:pub.10.1007/s00284-019-01680-1",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isFundedItemOf": [
{
"id": "sg:grant.4994918",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1088675",
"issn": [
"0343-8651",
"1432-0991"
],
"name": "Current Microbiology",
"type": "Periodical"
}
],
"name": "The Genome Sequence of a Novel Cyanophage S-B64 from the Yellow Sea, China.",
"productId": [
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"30949805"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"7808448"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s00284-019-01680-1"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1113185221"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s00284-019-01680-1",
"https://app.dimensions.ai/details/publication/pub.1113185221"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-11T14:18",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000372_0000000372/records_117103_00000003.jsonl",
"type": "ScholarlyArticle",
"url": "http://link.springer.com/10.1007/s00284-019-01680-1"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00284-019-01680-1'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00284-019-01680-1'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00284-019-01680-1'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00284-019-01680-1'
This table displays all metadata directly associated to this object as RDF triples.
167 TRIPLES
20 PREDICATES
42 URIs
16 LITERALS
6 BLANK NODES