Ontology type: schema:ScholarlyArticle
2018-08
AUTHORSChelsea Collins, Marisa Almuzara, Mariana Saigo, Sabrina Montaña, Kevin Chiem, German Traglia, Maria Alejandra Mussi, Marcelo Tolmasky, Andres Iriarte, Carlos Vay, Maria Soledad Ramirez
ABSTRACTThe spread of antibiotic resistance is rapidly threatening the effectiveness of antibiotics in the clinical setting. Many infections are being caused by known and unknown pathogenic bacteria that are resistant to many or all antibiotics currently available. Empedobacter falsenii is a nosocomial pathogen that can cause human infections. E. falsenii Wf282 strain was found to be resistant to many antibiotics, including carbapenems and colistin. Whole-genome shotgun sequencing of the strain was performed, and distinct features were identified. A novel metallo-β-lactamase, named EBR-2, was found, suggesting a potential role of E. falsenii as a reservoir of β-lactamases and other resistance determinants also found in its genome. The EBR-2 protein showed the highest catalytic efficiency for penicillin G as compared to meropenem and ampicillin and was unable to hydrolyze cefepime. The results described in this work broaden the current understanding of the role of β-lactamases in the Flavobacteriaceae family and suggest that E. falsenii Wf282 may be a reservoir of these novel resistance determinants. More... »
PAGES1084-1089
http://scigraph.springernature.com/pub.10.1007/s00284-018-1498-9
DOIhttp://dx.doi.org/10.1007/s00284-018-1498-9
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1103608330
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/29687150
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/1108",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Medical Microbiology",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/11",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Medical and Health Sciences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Amino Acid Sequence",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Ampicillin",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Anti-Bacterial Agents",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cephalosporins",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cross Infection",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Drug Resistance, Multiple, Bacterial",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Flavobacteriaceae",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genome, Bacterial",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Humans",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Microbial Sensitivity Tests",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Penicillin G",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Thienamycins",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "beta-Lactamases",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "California State University, Fullerton",
"id": "https://www.grid.ac/institutes/grid.253559.d",
"name": [
"Department of Biological Science, California State University Fullerton, 800 N State College Blvd, 92831, Fullerton, CA, USA"
],
"type": "Organization"
},
"familyName": "Collins",
"givenName": "Chelsea",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Hospital de Cl\u00ednicas \"Jos\u00e9 de San Mart\u00edn\"",
"id": "https://www.grid.ac/institutes/grid.412714.5",
"name": [
"Laboratorio de Bacteriolog\u00eda Cl\u00ednica, Departamento de Bioqu\u00edmica Cl\u00ednica, Facultad de Farmacia y Bioqu\u00edmica, Hospital de Cl\u00ednicas Jos\u00e9 de San Mart\u00edn, Buenos Aires, Argentina"
],
"type": "Organization"
},
"familyName": "Almuzara",
"givenName": "Marisa",
"id": "sg:person.01306205211.40",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01306205211.40"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"Centro de Estudios Fotosint\u00e9ticos y Bioqu\u00edmicos (CEFOBI- CONICET), 2000, Rosario, Argentina"
],
"type": "Organization"
},
"familyName": "Saigo",
"givenName": "Mariana",
"id": "sg:person.01133777466.50",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01133777466.50"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Buenos Aires",
"id": "https://www.grid.ac/institutes/grid.7345.5",
"name": [
"Facultad de Medicina, Instituto de Microbiolog\u00eda y Parasitolog\u00eda M\u00e9dica (IMPaM, UBA-CONICET), Universidad de Buenos Aires, Buenos Aires, Argentina"
],
"type": "Organization"
},
"familyName": "Monta\u00f1a",
"givenName": "Sabrina",
"id": "sg:person.0575762534.76",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0575762534.76"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "California State University, Fullerton",
"id": "https://www.grid.ac/institutes/grid.253559.d",
"name": [
"Department of Biological Science, California State University Fullerton, 800 N State College Blvd, 92831, Fullerton, CA, USA"
],
"type": "Organization"
},
"familyName": "Chiem",
"givenName": "Kevin",
"id": "sg:person.0643536552.04",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0643536552.04"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Hospital de Cl\u00ednicas \"Jos\u00e9 de San Mart\u00edn\"",
"id": "https://www.grid.ac/institutes/grid.412714.5",
"name": [
"Laboratorio de Bacteriolog\u00eda Cl\u00ednica, Departamento de Bioqu\u00edmica Cl\u00ednica, Facultad de Farmacia y Bioqu\u00edmica, Hospital de Cl\u00ednicas Jos\u00e9 de San Mart\u00edn, Buenos Aires, Argentina"
],
"type": "Organization"
},
"familyName": "Traglia",
"givenName": "German",
"id": "sg:person.0642772524.17",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0642772524.17"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"Centro de Estudios Fotosint\u00e9ticos y Bioqu\u00edmicos (CEFOBI- CONICET), 2000, Rosario, Argentina"
],
"type": "Organization"
},
"familyName": "Mussi",
"givenName": "Maria Alejandra",
"id": "sg:person.01361627725.34",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01361627725.34"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "California State University, Fullerton",
"id": "https://www.grid.ac/institutes/grid.253559.d",
"name": [
"Department of Biological Science, California State University Fullerton, 800 N State College Blvd, 92831, Fullerton, CA, USA"
],
"type": "Organization"
},
"familyName": "Tolmasky",
"givenName": "Marcelo",
"id": "sg:person.01360627744.76",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01360627744.76"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of the Republic",
"id": "https://www.grid.ac/institutes/grid.11630.35",
"name": [
"Laboratorio de Biolog\u00eda Computacional, Departamento de Desarrollo Biotecnol\u00f3gico, Facultad de Medicina, Instituto de Higiene, Universidad de la Rep\u00fablica, Montevideo, Uruguay"
],
"type": "Organization"
},
"familyName": "Iriarte",
"givenName": "Andres",
"id": "sg:person.01244540272.35",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01244540272.35"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Hospital de Cl\u00ednicas \"Jos\u00e9 de San Mart\u00edn\"",
"id": "https://www.grid.ac/institutes/grid.412714.5",
"name": [
"Laboratorio de Bacteriolog\u00eda Cl\u00ednica, Departamento de Bioqu\u00edmica Cl\u00ednica, Facultad de Farmacia y Bioqu\u00edmica, Hospital de Cl\u00ednicas Jos\u00e9 de San Mart\u00edn, Buenos Aires, Argentina"
],
"type": "Organization"
},
"familyName": "Vay",
"givenName": "Carlos",
"id": "sg:person.0645514642.52",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0645514642.52"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "California State University, Fullerton",
"id": "https://www.grid.ac/institutes/grid.253559.d",
"name": [
"Department of Biological Science, California State University Fullerton, 800 N State College Blvd, 92831, Fullerton, CA, USA"
],
"type": "Organization"
},
"familyName": "Ramirez",
"givenName": "Maria Soledad",
"id": "sg:person.0661257075.43",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0661257075.43"
],
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1101/gr.1224503",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000505228"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btu033",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000848409"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aac.02425-14",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002828852"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkr485",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1007259041"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aac.01310-13",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1007546945"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2164-9-75",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013431920",
"https://doi.org/10.1186/1471-2164-9-75"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0022-2836(05)80360-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013618994"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btl158",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014668137"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1080/10635150701472164",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019116948"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkj014",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021624519"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkw1099",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022885794"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/jmm.0.052555-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027023216"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aac.44.11.3028-3034.2000",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027137634"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0140045",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028007057"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aac.46.10.3223-3227.2002",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028382959"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/jlme.12268",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030271475"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/jlme.12268",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030271475"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aac.05315-11",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032015060"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.bjid.2016.08.009",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033353811"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btu031",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036320682"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2105-5-113",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040413794",
"https://doi.org/10.1186/1471-2105-5-113"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aac.00825-15",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1041173819"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aem.02411-13",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049815913"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gr.074492.107",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051720574"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1574-6976.2011.00295.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053379171"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0378-1097(98)00594-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1054655509"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi201449r",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055204626"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi201449r",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055204626"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1089/cmb.2012.0021",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1059246094"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/jac/dkv181",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1059735924"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/jac/dkv324",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1059736019"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/ijs.0.64393-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060387270"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/jcm.03264-15",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062712280"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/genomea.00235-15",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062714069"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.7860/jcdr/2015/13965.6417",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1074082081"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-1-4939-7015-5_6",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1085083567",
"https://doi.org/10.1007/978-1-4939-7015-5_6"
],
"type": "CreativeWork"
}
],
"datePublished": "2018-08",
"datePublishedReg": "2018-08-01",
"description": "The spread of antibiotic resistance is rapidly threatening the effectiveness of antibiotics in the clinical setting. Many infections are being caused by known and unknown pathogenic bacteria that are resistant to many or all antibiotics currently available. Empedobacter falsenii is a nosocomial pathogen that can cause human infections. E. falsenii Wf282 strain was found to be resistant to many antibiotics, including carbapenems and colistin. Whole-genome shotgun sequencing of the strain was performed, and distinct features were identified. A novel metallo-\u03b2-lactamase, named EBR-2, was found, suggesting a potential role of E. falsenii as a reservoir of \u03b2-lactamases and other resistance determinants also found in its genome. The EBR-2 protein showed the highest catalytic efficiency for penicillin G as compared to meropenem and ampicillin and was unable to hydrolyze cefepime. The results described in this work broaden the current understanding of the role of \u03b2-lactamases in the Flavobacteriaceae family and suggest that E. falsenii Wf282 may be a reservoir of these novel resistance determinants.",
"genre": "research_article",
"id": "sg:pub.10.1007/s00284-018-1498-9",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isFundedItemOf": [
{
"id": "sg:grant.2686449",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1088675",
"issn": [
"0343-8651",
"1432-0991"
],
"name": "Current Microbiology",
"type": "Periodical"
},
{
"issueNumber": "8",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "75"
}
],
"name": "Whole-Genome Analysis of an Extensively Drug-Resistance Empedobacter falsenii Strain Reveals Distinct Features and the Presence of a Novel Metallo-\u00df-Lactamase (EBR-2)",
"pagination": "1084-1089",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"d078197bd7c9a7f220a630c9679d1d2d8ce0cbf285da317345c20662c5d21f11"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"29687150"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"7808448"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s00284-018-1498-9"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1103608330"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s00284-018-1498-9",
"https://app.dimensions.ai/details/publication/pub.1103608330"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-10T13:32",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8659_00000604.jsonl",
"type": "ScholarlyArticle",
"url": "http://link.springer.com/10.1007%2Fs00284-018-1498-9"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00284-018-1498-9'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00284-018-1498-9'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00284-018-1498-9'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00284-018-1498-9'
This table displays all metadata directly associated to this object as RDF triples.
310 TRIPLES
21 PREDICATES
76 URIs
34 LITERALS
22 BLANK NODES