Degradative enzymes for type II arabinogalactan side chains in Bifidobacterium longum subsp. longum View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2019-02

AUTHORS

Kiyotaka Fujita, Ayami Sakamoto, Satoshi Kaneko, Toshihisa Kotake, Yoichi Tsumuraya, Kanefumi Kitahara

ABSTRACT

Type II arabinogalactan (AG) is a soluble prebiotic fiber stimulating the proliferation of bifidobacteria in the human gut. Larch AG, which is comprised of type II AG, is known to be utilized as an energy source for Bifidobacterium longum subsp. longum (B. longum). We have previously characterized GH43_24 exo-β-1,3-galactanase (Bl1,3Gal) for the degradation of type II AG main chains in B. longum JCM1217. In this study, we characterized GH30_5 exo-β-1,6-galactobiohydrolase (Bl1,6Gal) and GH43_22 α-L-arabinofuranosidase (BlArafA), which are degradative enzymes for type II AG side chains in cooperation with exo-β-1,3-galactanase. The recombinant exo-β-1,6-galactobiohydrolase specifically released β-1,6-galactobiose (β-1,6-Gal2) from the nonreducing terminal of β-1,6-galactooligosaccharides, and the recombinant α-L-arabinofuranosidase released arabinofuranose (Araf) from α-1,3-Araf-substituted β-1,6-galactooligosaccharides. β-1,6-Gal2 was additively released from larch AG by the combined use of type II AG degradative enzymes, including Bl1,3Gal, Bl1,6Gal, and BlArafA. The gene cluster encoding the type II AG degradative enzymes is conserved in all B. longum strains, but not in other bifidobacterial species. The degradative enzymes for type II AG side chains are thought to be important for the acquisition of type II AG in B. longum. More... »

PAGES

1299-1310

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s00253-018-9566-4

DOI

http://dx.doi.org/10.1007/s00253-018-9566-4

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1110756122

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/30564851


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0601", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biochemistry and Cell Biology", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Kagoshima University", 
          "id": "https://www.grid.ac/institutes/grid.258333.c", 
          "name": [
            "Faculty of Agriculture, Kagoshima University, 1-21-24 Korimoto, 890-0065, Kagoshima, Kagoshima, Japan", 
            "The United Graduate School of Agricultural Sciences Kagoshima University, 1-21-24 Korimoto, 890-0065, Kagoshima, Kagoshima, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Fujita", 
        "givenName": "Kiyotaka", 
        "id": "sg:person.01156460703.01", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01156460703.01"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Kagoshima University", 
          "id": "https://www.grid.ac/institutes/grid.258333.c", 
          "name": [
            "Faculty of Agriculture, Kagoshima University, 1-21-24 Korimoto, 890-0065, Kagoshima, Kagoshima, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Sakamoto", 
        "givenName": "Ayami", 
        "id": "sg:person.0655506264.51", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0655506264.51"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of the Ryukyus", 
          "id": "https://www.grid.ac/institutes/grid.267625.2", 
          "name": [
            "Faculty of Agriculture, University of the Ryukyus, 1 Senbaru, 903-0213, Nishihara, Okinawa, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kaneko", 
        "givenName": "Satoshi", 
        "id": "sg:person.0607467035.19", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0607467035.19"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Saitama University", 
          "id": "https://www.grid.ac/institutes/grid.263023.6", 
          "name": [
            "Graduate School of Science and Engineering, Saitama University, 255 Shimo-okubo, 338-8570, Saitama, Sakura-ku, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kotake", 
        "givenName": "Toshihisa", 
        "id": "sg:person.01057010266.20", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01057010266.20"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Saitama University", 
          "id": "https://www.grid.ac/institutes/grid.263023.6", 
          "name": [
            "Graduate School of Science and Engineering, Saitama University, 255 Shimo-okubo, 338-8570, Saitama, Sakura-ku, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Tsumuraya", 
        "givenName": "Yoichi", 
        "id": "sg:person.0632174366.68", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0632174366.68"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Kagoshima University", 
          "id": "https://www.grid.ac/institutes/grid.258333.c", 
          "name": [
            "Faculty of Agriculture, Kagoshima University, 1-21-24 Korimoto, 890-0065, Kagoshima, Kagoshima, Japan", 
            "The United Graduate School of Agricultural Sciences Kagoshima University, 1-21-24 Korimoto, 890-0065, Kagoshima, Kagoshima, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kitahara", 
        "givenName": "Kanefumi", 
        "id": "sg:person.01133617135.48", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01133617135.48"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1016/0144-8617(95)00152-2", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1001330864"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1080/09168451.2014.910100", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1001779866"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/aem.02101-06", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1002373647"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0008-6215(92)84108-5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1003533378"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0144-8617(97)00099-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1006609653"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1159/000096455", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1006673400"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1085/jgp.201411164", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1006941225"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/1758-2229.12056", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007030408"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00253-007-0956-2", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007980807", 
          "https://doi.org/10.1007/s00253-007-0956-2"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00253-007-0956-2", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007980807", 
          "https://doi.org/10.1007/s00253-007-0956-2"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0008-6215(94)00290-v", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1010772175"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1074/jbc.m506874200", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011020417"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/aem.01733-07", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1012165835"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/s12900-015-0042-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1012265637", 
          "https://doi.org/10.1186/s12900-015-0042-4"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/molbev/msw054", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1012564990"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.112.202309", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1014391669"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.foodhyd.2012.09.014", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017309943"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0008-6215(94)90028-0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1018974507"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0008-6215(94)90028-0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1018974507"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1074/jbc.m709777200", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020315857"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1017/s0007114508981447", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021136525"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0168-1605(94)90119-8", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021995143"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0168-1605(94)90119-8", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021995143"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.86.1.155", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022313657"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf00392262", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022596472", 
          "https://doi.org/10.1007/bf00392262"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf00392262", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022596472", 
          "https://doi.org/10.1007/bf00392262"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.jmb.2015.07.006", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1024146217"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.jsb.2012.08.005", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1029248544"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/aem.03453-15", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1029666050"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1074/jbc.m110.215962", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1029762098"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/aem.00802-14", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1031183420"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1074/jbc.m113.528711", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1031741323"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1006/jmbi.2001.5338", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1033665814"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0003-2697(79)80131-1", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1038398368"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0008-6215(84)85039-9", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1038655762"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.carres.2010.09.006", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1038944876"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/aem.00149-08", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1039415530"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.enzmictec.2015.04.003", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1040942201"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pone.0033524", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042183990"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1074/jbc.m110.190512", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042196565"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00253-013-4759-3", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043379065", 
          "https://doi.org/10.1007/s00253-013-4759-3"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00253-004-1850-9", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1046163060", 
          "https://doi.org/10.1007/s00253-004-1850-9"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/mnfr.200700121", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048222622"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00253-008-1551-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048575588", 
          "https://doi.org/10.1007/s00253-008-1551-x"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00253-008-1551-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048575588", 
          "https://doi.org/10.1007/s00253-008-1551-x"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00253-012-4509-y", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049824180", 
          "https://doi.org/10.1007/s00253-012-4509-y"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.enzmictec.2014.03.005", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1050345577"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1042/bj20031145", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1050354573"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1042/bj20031145", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1050354573"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.febslet.2010.09.051", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051288127"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2148-12-186", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051443156", 
          "https://doi.org/10.1186/1471-2148-12-186"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0144-8617(02)00303-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1052743077"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0144-8617(02)00303-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1052743077"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/ac60111a017", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055031436"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/jf101283f", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055908218"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/jf101283f", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055908218"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/jf903843f", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055927680"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/jf903843f", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055927680"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1080/089106001750071690", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1058345737"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1074368827", 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1076775764", 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1083324459", 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00284-017-1272-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1085914528", 
          "https://doi.org/10.1007/s00284-017-1272-4"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00284-017-1272-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1085914528", 
          "https://doi.org/10.1007/s00284-017-1272-4"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2019-02", 
    "datePublishedReg": "2019-02-01", 
    "description": "Type II arabinogalactan (AG) is a soluble prebiotic fiber stimulating the proliferation of bifidobacteria in the human gut. Larch AG, which is comprised of type II AG, is known to be utilized as an energy source for Bifidobacterium longum subsp. longum (B. longum). We have previously characterized GH43_24 exo-\u03b2-1,3-galactanase (Bl1,3Gal) for the degradation of type II AG main chains in B. longum JCM1217. In this study, we characterized GH30_5 exo-\u03b2-1,6-galactobiohydrolase (Bl1,6Gal) and GH43_22 \u03b1-L-arabinofuranosidase (BlArafA), which are degradative enzymes for type II AG side chains in cooperation with exo-\u03b2-1,3-galactanase. The recombinant exo-\u03b2-1,6-galactobiohydrolase specifically released \u03b2-1,6-galactobiose (\u03b2-1,6-Gal2) from the nonreducing terminal of \u03b2-1,6-galactooligosaccharides, and the recombinant \u03b1-L-arabinofuranosidase released arabinofuranose (Araf) from \u03b1-1,3-Araf-substituted \u03b2-1,6-galactooligosaccharides. \u03b2-1,6-Gal2 was additively released from larch AG by the combined use of type II AG degradative enzymes, including Bl1,3Gal, Bl1,6Gal, and BlArafA. The gene cluster encoding the type II AG degradative enzymes is conserved in all B. longum strains, but not in other bifidobacterial species. The degradative enzymes for type II AG side chains are thought to be important for the acquisition of type II AG in B. longum.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1007/s00253-018-9566-4", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.6089962", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1083533", 
        "issn": [
          "0175-7598", 
          "1432-0614"
        ], 
        "name": "Applied Microbiology and Biotechnology", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "3", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "103"
      }
    ], 
    "name": "Degradative enzymes for type II arabinogalactan side chains in Bifidobacterium longum subsp. longum", 
    "pagination": "1299-1310", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "d779056b0454c4ab90af5d942ac9fa5afc7bcd3d4f3fe0f260f5c3d7f755ccb5"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "30564851"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "8406612"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/s00253-018-9566-4"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1110756122"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/s00253-018-9566-4", 
      "https://app.dimensions.ai/details/publication/pub.1110756122"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-11T09:11", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000338_0000000338/records_47976_00000002.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://link.springer.com/10.1007%2Fs00253-018-9566-4"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00253-018-9566-4'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00253-018-9566-4'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00253-018-9566-4'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00253-018-9566-4'


 

This table displays all metadata directly associated to this object as RDF triples.

281 TRIPLES      21 PREDICATES      83 URIs      21 LITERALS      9 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/s00253-018-9566-4 schema:about anzsrc-for:06
2 anzsrc-for:0601
3 schema:author N5ae06595ee594724814ba54063676957
4 schema:citation sg:pub.10.1007/bf00392262
5 sg:pub.10.1007/s00253-004-1850-9
6 sg:pub.10.1007/s00253-007-0956-2
7 sg:pub.10.1007/s00253-008-1551-x
8 sg:pub.10.1007/s00253-012-4509-y
9 sg:pub.10.1007/s00253-013-4759-3
10 sg:pub.10.1007/s00284-017-1272-4
11 sg:pub.10.1186/1471-2148-12-186
12 sg:pub.10.1186/s12900-015-0042-4
13 https://app.dimensions.ai/details/publication/pub.1074368827
14 https://app.dimensions.ai/details/publication/pub.1076775764
15 https://app.dimensions.ai/details/publication/pub.1083324459
16 https://doi.org/10.1002/mnfr.200700121
17 https://doi.org/10.1006/jmbi.2001.5338
18 https://doi.org/10.1016/0008-6215(84)85039-9
19 https://doi.org/10.1016/0008-6215(92)84108-5
20 https://doi.org/10.1016/0008-6215(94)00290-v
21 https://doi.org/10.1016/0008-6215(94)90028-0
22 https://doi.org/10.1016/0144-8617(95)00152-2
23 https://doi.org/10.1016/0168-1605(94)90119-8
24 https://doi.org/10.1016/j.carres.2010.09.006
25 https://doi.org/10.1016/j.enzmictec.2014.03.005
26 https://doi.org/10.1016/j.enzmictec.2015.04.003
27 https://doi.org/10.1016/j.febslet.2010.09.051
28 https://doi.org/10.1016/j.foodhyd.2012.09.014
29 https://doi.org/10.1016/j.jmb.2015.07.006
30 https://doi.org/10.1016/j.jsb.2012.08.005
31 https://doi.org/10.1016/s0003-2697(79)80131-1
32 https://doi.org/10.1016/s0144-8617(02)00303-x
33 https://doi.org/10.1016/s0144-8617(97)00099-4
34 https://doi.org/10.1017/s0007114508981447
35 https://doi.org/10.1021/ac60111a017
36 https://doi.org/10.1021/jf101283f
37 https://doi.org/10.1021/jf903843f
38 https://doi.org/10.1042/bj20031145
39 https://doi.org/10.1074/jbc.m110.190512
40 https://doi.org/10.1074/jbc.m110.215962
41 https://doi.org/10.1074/jbc.m113.528711
42 https://doi.org/10.1074/jbc.m506874200
43 https://doi.org/10.1074/jbc.m709777200
44 https://doi.org/10.1080/089106001750071690
45 https://doi.org/10.1080/09168451.2014.910100
46 https://doi.org/10.1085/jgp.201411164
47 https://doi.org/10.1093/molbev/msw054
48 https://doi.org/10.1104/pp.112.202309
49 https://doi.org/10.1104/pp.86.1.155
50 https://doi.org/10.1111/1758-2229.12056
51 https://doi.org/10.1128/aem.00149-08
52 https://doi.org/10.1128/aem.00802-14
53 https://doi.org/10.1128/aem.01733-07
54 https://doi.org/10.1128/aem.02101-06
55 https://doi.org/10.1128/aem.03453-15
56 https://doi.org/10.1159/000096455
57 https://doi.org/10.1371/journal.pone.0033524
58 schema:datePublished 2019-02
59 schema:datePublishedReg 2019-02-01
60 schema:description Type II arabinogalactan (AG) is a soluble prebiotic fiber stimulating the proliferation of bifidobacteria in the human gut. Larch AG, which is comprised of type II AG, is known to be utilized as an energy source for Bifidobacterium longum subsp. longum (B. longum). We have previously characterized GH43_24 exo-β-1,3-galactanase (Bl1,3Gal) for the degradation of type II AG main chains in B. longum JCM1217. In this study, we characterized GH30_5 exo-β-1,6-galactobiohydrolase (Bl1,6Gal) and GH43_22 α-L-arabinofuranosidase (BlArafA), which are degradative enzymes for type II AG side chains in cooperation with exo-β-1,3-galactanase. The recombinant exo-β-1,6-galactobiohydrolase specifically released β-1,6-galactobiose (β-1,6-Gal<sub>2</sub>) from the nonreducing terminal of β-1,6-galactooligosaccharides, and the recombinant α-L-arabinofuranosidase released arabinofuranose (Araf) from α-1,3-Araf-substituted β-1,6-galactooligosaccharides. β-1,6-Gal<sub>2</sub> was additively released from larch AG by the combined use of type II AG degradative enzymes, including Bl1,3Gal, Bl1,6Gal, and BlArafA. The gene cluster encoding the type II AG degradative enzymes is conserved in all B. longum strains, but not in other bifidobacterial species. The degradative enzymes for type II AG side chains are thought to be important for the acquisition of type II AG in B. longum.
61 schema:genre research_article
62 schema:inLanguage en
63 schema:isAccessibleForFree false
64 schema:isPartOf N3056181b957349bfa3934557fba85920
65 N8c77b6def3a44a549ab98656e11fdb18
66 sg:journal.1083533
67 schema:name Degradative enzymes for type II arabinogalactan side chains in Bifidobacterium longum subsp. longum
68 schema:pagination 1299-1310
69 schema:productId N14150dd386a5465f8959234490868457
70 N58eddf91b91e420c9b6d30c285ba26d8
71 N9d9a0e0193ec46f5ae58ed73957ced2f
72 Na3f620f3c9f34c94ba1f3ee27784b7f6
73 Nb62a3bfcc508463f8136d75b79d57d30
74 schema:sameAs https://app.dimensions.ai/details/publication/pub.1110756122
75 https://doi.org/10.1007/s00253-018-9566-4
76 schema:sdDatePublished 2019-04-11T09:11
77 schema:sdLicense https://scigraph.springernature.com/explorer/license/
78 schema:sdPublisher Nb06511fc197543e4bbf2bf659ea73e61
79 schema:url https://link.springer.com/10.1007%2Fs00253-018-9566-4
80 sgo:license sg:explorer/license/
81 sgo:sdDataset articles
82 rdf:type schema:ScholarlyArticle
83 N14150dd386a5465f8959234490868457 schema:name nlm_unique_id
84 schema:value 8406612
85 rdf:type schema:PropertyValue
86 N3056181b957349bfa3934557fba85920 schema:volumeNumber 103
87 rdf:type schema:PublicationVolume
88 N568b81bfcd5b4925b0d3c0236692075f rdf:first sg:person.01133617135.48
89 rdf:rest rdf:nil
90 N58eddf91b91e420c9b6d30c285ba26d8 schema:name doi
91 schema:value 10.1007/s00253-018-9566-4
92 rdf:type schema:PropertyValue
93 N5ae06595ee594724814ba54063676957 rdf:first sg:person.01156460703.01
94 rdf:rest Naa3262ac45cf4ff58a8bb1074fe8a5da
95 N65077e50c01640e487a7c7bb15b7fd59 rdf:first sg:person.0632174366.68
96 rdf:rest N568b81bfcd5b4925b0d3c0236692075f
97 N8c77b6def3a44a549ab98656e11fdb18 schema:issueNumber 3
98 rdf:type schema:PublicationIssue
99 N9d9a0e0193ec46f5ae58ed73957ced2f schema:name pubmed_id
100 schema:value 30564851
101 rdf:type schema:PropertyValue
102 Na3f620f3c9f34c94ba1f3ee27784b7f6 schema:name readcube_id
103 schema:value d779056b0454c4ab90af5d942ac9fa5afc7bcd3d4f3fe0f260f5c3d7f755ccb5
104 rdf:type schema:PropertyValue
105 Naa3262ac45cf4ff58a8bb1074fe8a5da rdf:first sg:person.0655506264.51
106 rdf:rest Nbd32246cc18f46b083d96a0dc7eba33f
107 Nb06511fc197543e4bbf2bf659ea73e61 schema:name Springer Nature - SN SciGraph project
108 rdf:type schema:Organization
109 Nb62a3bfcc508463f8136d75b79d57d30 schema:name dimensions_id
110 schema:value pub.1110756122
111 rdf:type schema:PropertyValue
112 Nbd32246cc18f46b083d96a0dc7eba33f rdf:first sg:person.0607467035.19
113 rdf:rest Nf7e41db637d24189a05e6022fef9fc86
114 Nf7e41db637d24189a05e6022fef9fc86 rdf:first sg:person.01057010266.20
115 rdf:rest N65077e50c01640e487a7c7bb15b7fd59
116 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
117 schema:name Biological Sciences
118 rdf:type schema:DefinedTerm
119 anzsrc-for:0601 schema:inDefinedTermSet anzsrc-for:
120 schema:name Biochemistry and Cell Biology
121 rdf:type schema:DefinedTerm
122 sg:grant.6089962 http://pending.schema.org/fundedItem sg:pub.10.1007/s00253-018-9566-4
123 rdf:type schema:MonetaryGrant
124 sg:journal.1083533 schema:issn 0175-7598
125 1432-0614
126 schema:name Applied Microbiology and Biotechnology
127 rdf:type schema:Periodical
128 sg:person.01057010266.20 schema:affiliation https://www.grid.ac/institutes/grid.263023.6
129 schema:familyName Kotake
130 schema:givenName Toshihisa
131 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01057010266.20
132 rdf:type schema:Person
133 sg:person.01133617135.48 schema:affiliation https://www.grid.ac/institutes/grid.258333.c
134 schema:familyName Kitahara
135 schema:givenName Kanefumi
136 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01133617135.48
137 rdf:type schema:Person
138 sg:person.01156460703.01 schema:affiliation https://www.grid.ac/institutes/grid.258333.c
139 schema:familyName Fujita
140 schema:givenName Kiyotaka
141 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01156460703.01
142 rdf:type schema:Person
143 sg:person.0607467035.19 schema:affiliation https://www.grid.ac/institutes/grid.267625.2
144 schema:familyName Kaneko
145 schema:givenName Satoshi
146 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0607467035.19
147 rdf:type schema:Person
148 sg:person.0632174366.68 schema:affiliation https://www.grid.ac/institutes/grid.263023.6
149 schema:familyName Tsumuraya
150 schema:givenName Yoichi
151 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0632174366.68
152 rdf:type schema:Person
153 sg:person.0655506264.51 schema:affiliation https://www.grid.ac/institutes/grid.258333.c
154 schema:familyName Sakamoto
155 schema:givenName Ayami
156 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0655506264.51
157 rdf:type schema:Person
158 sg:pub.10.1007/bf00392262 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022596472
159 https://doi.org/10.1007/bf00392262
160 rdf:type schema:CreativeWork
161 sg:pub.10.1007/s00253-004-1850-9 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046163060
162 https://doi.org/10.1007/s00253-004-1850-9
163 rdf:type schema:CreativeWork
164 sg:pub.10.1007/s00253-007-0956-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007980807
165 https://doi.org/10.1007/s00253-007-0956-2
166 rdf:type schema:CreativeWork
167 sg:pub.10.1007/s00253-008-1551-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1048575588
168 https://doi.org/10.1007/s00253-008-1551-x
169 rdf:type schema:CreativeWork
170 sg:pub.10.1007/s00253-012-4509-y schema:sameAs https://app.dimensions.ai/details/publication/pub.1049824180
171 https://doi.org/10.1007/s00253-012-4509-y
172 rdf:type schema:CreativeWork
173 sg:pub.10.1007/s00253-013-4759-3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043379065
174 https://doi.org/10.1007/s00253-013-4759-3
175 rdf:type schema:CreativeWork
176 sg:pub.10.1007/s00284-017-1272-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1085914528
177 https://doi.org/10.1007/s00284-017-1272-4
178 rdf:type schema:CreativeWork
179 sg:pub.10.1186/1471-2148-12-186 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051443156
180 https://doi.org/10.1186/1471-2148-12-186
181 rdf:type schema:CreativeWork
182 sg:pub.10.1186/s12900-015-0042-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012265637
183 https://doi.org/10.1186/s12900-015-0042-4
184 rdf:type schema:CreativeWork
185 https://app.dimensions.ai/details/publication/pub.1074368827 schema:CreativeWork
186 https://app.dimensions.ai/details/publication/pub.1076775764 schema:CreativeWork
187 https://app.dimensions.ai/details/publication/pub.1083324459 schema:CreativeWork
188 https://doi.org/10.1002/mnfr.200700121 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048222622
189 rdf:type schema:CreativeWork
190 https://doi.org/10.1006/jmbi.2001.5338 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033665814
191 rdf:type schema:CreativeWork
192 https://doi.org/10.1016/0008-6215(84)85039-9 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038655762
193 rdf:type schema:CreativeWork
194 https://doi.org/10.1016/0008-6215(92)84108-5 schema:sameAs https://app.dimensions.ai/details/publication/pub.1003533378
195 rdf:type schema:CreativeWork
196 https://doi.org/10.1016/0008-6215(94)00290-v schema:sameAs https://app.dimensions.ai/details/publication/pub.1010772175
197 rdf:type schema:CreativeWork
198 https://doi.org/10.1016/0008-6215(94)90028-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018974507
199 rdf:type schema:CreativeWork
200 https://doi.org/10.1016/0144-8617(95)00152-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001330864
201 rdf:type schema:CreativeWork
202 https://doi.org/10.1016/0168-1605(94)90119-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021995143
203 rdf:type schema:CreativeWork
204 https://doi.org/10.1016/j.carres.2010.09.006 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038944876
205 rdf:type schema:CreativeWork
206 https://doi.org/10.1016/j.enzmictec.2014.03.005 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050345577
207 rdf:type schema:CreativeWork
208 https://doi.org/10.1016/j.enzmictec.2015.04.003 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040942201
209 rdf:type schema:CreativeWork
210 https://doi.org/10.1016/j.febslet.2010.09.051 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051288127
211 rdf:type schema:CreativeWork
212 https://doi.org/10.1016/j.foodhyd.2012.09.014 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017309943
213 rdf:type schema:CreativeWork
214 https://doi.org/10.1016/j.jmb.2015.07.006 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024146217
215 rdf:type schema:CreativeWork
216 https://doi.org/10.1016/j.jsb.2012.08.005 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029248544
217 rdf:type schema:CreativeWork
218 https://doi.org/10.1016/s0003-2697(79)80131-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038398368
219 rdf:type schema:CreativeWork
220 https://doi.org/10.1016/s0144-8617(02)00303-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1052743077
221 rdf:type schema:CreativeWork
222 https://doi.org/10.1016/s0144-8617(97)00099-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006609653
223 rdf:type schema:CreativeWork
224 https://doi.org/10.1017/s0007114508981447 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021136525
225 rdf:type schema:CreativeWork
226 https://doi.org/10.1021/ac60111a017 schema:sameAs https://app.dimensions.ai/details/publication/pub.1055031436
227 rdf:type schema:CreativeWork
228 https://doi.org/10.1021/jf101283f schema:sameAs https://app.dimensions.ai/details/publication/pub.1055908218
229 rdf:type schema:CreativeWork
230 https://doi.org/10.1021/jf903843f schema:sameAs https://app.dimensions.ai/details/publication/pub.1055927680
231 rdf:type schema:CreativeWork
232 https://doi.org/10.1042/bj20031145 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050354573
233 rdf:type schema:CreativeWork
234 https://doi.org/10.1074/jbc.m110.190512 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042196565
235 rdf:type schema:CreativeWork
236 https://doi.org/10.1074/jbc.m110.215962 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029762098
237 rdf:type schema:CreativeWork
238 https://doi.org/10.1074/jbc.m113.528711 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031741323
239 rdf:type schema:CreativeWork
240 https://doi.org/10.1074/jbc.m506874200 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011020417
241 rdf:type schema:CreativeWork
242 https://doi.org/10.1074/jbc.m709777200 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020315857
243 rdf:type schema:CreativeWork
244 https://doi.org/10.1080/089106001750071690 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058345737
245 rdf:type schema:CreativeWork
246 https://doi.org/10.1080/09168451.2014.910100 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001779866
247 rdf:type schema:CreativeWork
248 https://doi.org/10.1085/jgp.201411164 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006941225
249 rdf:type schema:CreativeWork
250 https://doi.org/10.1093/molbev/msw054 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012564990
251 rdf:type schema:CreativeWork
252 https://doi.org/10.1104/pp.112.202309 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014391669
253 rdf:type schema:CreativeWork
254 https://doi.org/10.1104/pp.86.1.155 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022313657
255 rdf:type schema:CreativeWork
256 https://doi.org/10.1111/1758-2229.12056 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007030408
257 rdf:type schema:CreativeWork
258 https://doi.org/10.1128/aem.00149-08 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039415530
259 rdf:type schema:CreativeWork
260 https://doi.org/10.1128/aem.00802-14 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031183420
261 rdf:type schema:CreativeWork
262 https://doi.org/10.1128/aem.01733-07 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012165835
263 rdf:type schema:CreativeWork
264 https://doi.org/10.1128/aem.02101-06 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002373647
265 rdf:type schema:CreativeWork
266 https://doi.org/10.1128/aem.03453-15 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029666050
267 rdf:type schema:CreativeWork
268 https://doi.org/10.1159/000096455 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006673400
269 rdf:type schema:CreativeWork
270 https://doi.org/10.1371/journal.pone.0033524 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042183990
271 rdf:type schema:CreativeWork
272 https://www.grid.ac/institutes/grid.258333.c schema:alternateName Kagoshima University
273 schema:name Faculty of Agriculture, Kagoshima University, 1-21-24 Korimoto, 890-0065, Kagoshima, Kagoshima, Japan
274 The United Graduate School of Agricultural Sciences Kagoshima University, 1-21-24 Korimoto, 890-0065, Kagoshima, Kagoshima, Japan
275 rdf:type schema:Organization
276 https://www.grid.ac/institutes/grid.263023.6 schema:alternateName Saitama University
277 schema:name Graduate School of Science and Engineering, Saitama University, 255 Shimo-okubo, 338-8570, Saitama, Sakura-ku, Japan
278 rdf:type schema:Organization
279 https://www.grid.ac/institutes/grid.267625.2 schema:alternateName University of the Ryukyus
280 schema:name Faculty of Agriculture, University of the Ryukyus, 1 Senbaru, 903-0213, Nishihara, Okinawa, Japan
281 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...