Ontology type: schema:ScholarlyArticle
2018-12
AUTHORSI. V. Kudryakova, A. G. Gabdulkhakov, S. V. Tishchenko, V. Ya. Lysanskaya, N. E. Suzina, I. M. Tsfasman, A. S. Afoshin, N. V. Vasilyeva
ABSTRACTThe Gram-negative bacterium Lysobacter sp. XL1 secretes into the extracellular space five bacteriolytic enzymes that lyse the cell walls of competing microorganisms. Of special interest are homologous lytic proteases L1 and L5. This work found protein L5 to possess Gly-Gly endopeptidase and N-acetylmuramoyl-L-Ala amidase activities with respect to staphylococcal peptidoglycan. Protein L5 was found to be capable of aggregating into amyloid-like fibril structures. The crystal structure of protein L5 was determined at a 1.60-Å resolution. Protein L5 was shown to have a rather high structural identity with bacteriolytic protease L1 of Lysobacter sp. XL1 and α-lytic protease of Lysobacter enzymogenes at a rather low identity of their amino acid sequences. Still, the structure of protein L5 was revealed to have regions that differed from their equivalents in the homologs. The revealed structural distinctions in L5 are suggested to be of importance in exhibiting its unique properties. More... »
PAGES1-11
http://scigraph.springernature.com/pub.10.1007/s00253-018-9364-z
DOIhttp://dx.doi.org/10.1007/s00253-018-9364-z
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1107082724
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/30229324
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0601",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biochemistry and Cell Biology",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Russian Academy of Sciences",
"id": "https://www.grid.ac/institutes/grid.4886.2",
"name": [
"G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, 5 Pr. Nauki, 142290, Pushchino, Moscow Region, Russia"
],
"type": "Organization"
},
"familyName": "Kudryakova",
"givenName": "I. V.",
"id": "sg:person.0576223261.17",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0576223261.17"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Institute of Protein Research",
"id": "https://www.grid.ac/institutes/grid.418952.3",
"name": [
"Institute of Protein Research, Russian Academy of Sciences, 4 Institutskaya Str., 142290, Pushchino, Moscow Region, Russia"
],
"type": "Organization"
},
"familyName": "Gabdulkhakov",
"givenName": "A. G.",
"id": "sg:person.0735136306.55",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0735136306.55"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Institute of Protein Research",
"id": "https://www.grid.ac/institutes/grid.418952.3",
"name": [
"Institute of Protein Research, Russian Academy of Sciences, 4 Institutskaya Str., 142290, Pushchino, Moscow Region, Russia"
],
"type": "Organization"
},
"familyName": "Tishchenko",
"givenName": "S. V.",
"id": "sg:person.0641157637.41",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0641157637.41"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Russian Academy of Sciences",
"id": "https://www.grid.ac/institutes/grid.4886.2",
"name": [
"G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, 5 Pr. Nauki, 142290, Pushchino, Moscow Region, Russia"
],
"type": "Organization"
},
"familyName": "Lysanskaya",
"givenName": "V. Ya.",
"id": "sg:person.0713671250.96",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0713671250.96"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Russian Academy of Sciences",
"id": "https://www.grid.ac/institutes/grid.4886.2",
"name": [
"G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, 5 Pr. Nauki, 142290, Pushchino, Moscow Region, Russia"
],
"type": "Organization"
},
"familyName": "Suzina",
"givenName": "N. E.",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Russian Academy of Sciences",
"id": "https://www.grid.ac/institutes/grid.4886.2",
"name": [
"G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, 5 Pr. Nauki, 142290, Pushchino, Moscow Region, Russia"
],
"type": "Organization"
},
"familyName": "Tsfasman",
"givenName": "I. M.",
"id": "sg:person.01256547373.42",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01256547373.42"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Russian Academy of Sciences",
"id": "https://www.grid.ac/institutes/grid.4886.2",
"name": [
"G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, 5 Pr. Nauki, 142290, Pushchino, Moscow Region, Russia"
],
"type": "Organization"
},
"familyName": "Afoshin",
"givenName": "A. S.",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Russian Academy of Sciences",
"id": "https://www.grid.ac/institutes/grid.4886.2",
"name": [
"G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, 5 Pr. Nauki, 142290, Pushchino, Moscow Region, Russia"
],
"type": "Organization"
},
"familyName": "Vasilyeva",
"givenName": "N. V.",
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1107/s0907444910007493",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000235100"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0907444910007493",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000235100"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aac.00931-06",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001381083"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aem.01621-12",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002841817"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00253-016-7524-6",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003034053",
"https://doi.org/10.1007/s00253-016-7524-6"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1039/c2np20064c",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006878728"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1080/00021369.1973.10861058",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010146224"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/227680a0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010419937",
"https://doi.org/10.1038/227680a0"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.bbapap.2013.05.012",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011547214"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10930-015-9645-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011923586",
"https://doi.org/10.1007/s10930-015-9645-7"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0021889807021206",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012753217"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.1859",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015387231",
"https://doi.org/10.1038/nmeth.1859"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1590/s0100-879x2006005000137",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017447276"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1529/biophysj.104.057158",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017523572"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1023/a:1025074714910",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018841957",
"https://doi.org/10.1023/a:1025074714910"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1159/000381266",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019734689"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00203-016-1278-5",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021834125",
"https://doi.org/10.1007/s00203-016-1278-5"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00203-016-1278-5",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021834125",
"https://doi.org/10.1007/s00203-016-1278-5"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/0003-2697(76)90527-3",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025529346"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1432-1033.1973.tb03061.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026955894"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1159/000356838",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029751173"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.jmb.2004.03.018",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030351912"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0907444911001314",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032555428"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/b978-0-12-382219-2.00349-5",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036328218"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1742-4658.2008.06530.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1039972894"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/0076-6879(94)44011-5",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042420984"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1083/jcb.118.1.33",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046333974"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/jam.12611",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047206988"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10541-005-0221-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048279762",
"https://doi.org/10.1007/s10541-005-0221-1"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10541-005-0221-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048279762",
"https://doi.org/10.1007/s10541-005-0221-1"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-2958.2006.05522.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048939620"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.mimet.2004.12.006",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050057234"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/0076-6879(66)08124-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050151858"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1006/jmbi.1995.0420",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050417714"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1006/jmbi.1995.0650",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053090993"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi00398a012",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055173822"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/femsle/fnv137",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1059580528"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/oxfordjournals.jbchem.a022694",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1059961495"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/00207713-28-3-367",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060347246"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1173155",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062460090"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1173155",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062460090"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/jb.171.3.1320-1325.1989",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062717691"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1139/o65-217",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062893797"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1139/o65-220",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062893800"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.4161/viru.27919",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1072311637"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2436/20.1501.01.208",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1079158186"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2436/20.1501.01.208",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1079158186"
],
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1079736373",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1080223123",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1080446058",
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1134/s0006297917040125",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1084510001",
"https://doi.org/10.1134/s0006297917040125"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/1462-2920.13861",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1090897590"
],
"type": "CreativeWork"
}
],
"datePublished": "2018-12",
"datePublishedReg": "2018-12-01",
"description": "The Gram-negative bacterium Lysobacter sp. XL1 secretes into the extracellular space five bacteriolytic enzymes that lyse the cell walls of competing microorganisms. Of special interest are homologous lytic proteases L1 and L5. This work found protein L5 to possess Gly-Gly endopeptidase and N-acetylmuramoyl-L-Ala amidase activities with respect to staphylococcal peptidoglycan. Protein L5 was found to be capable of aggregating into amyloid-like fibril structures. The crystal structure of protein L5 was determined at a 1.60-\u00c5 resolution. Protein L5 was shown to have a rather high structural identity with bacteriolytic protease L1 of Lysobacter sp. XL1 and \u03b1-lytic protease of Lysobacter enzymogenes at a rather low identity of their amino acid sequences. Still, the structure of protein L5 was revealed to have regions that differed from their equivalents in the homologs. The revealed structural distinctions in L5 are suggested to be of importance in exhibiting its unique properties.",
"genre": "research_article",
"id": "sg:pub.10.1007/s00253-018-9364-z",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1083533",
"issn": [
"0175-7598",
"1432-0614"
],
"name": "Applied Microbiology and Biotechnology",
"type": "Periodical"
}
],
"name": "Structural and functional properties of antimicrobial protein L5 of Lys\u043ebacter sp. XL1",
"pagination": "1-11",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"4498fb9eb0c8ed386bcab2e004c86e175647c9a30c68ee101950d41adfca6d03"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"30229324"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"8406612"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s00253-018-9364-z"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1107082724"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s00253-018-9364-z",
"https://app.dimensions.ai/details/publication/pub.1107082724"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-10T15:15",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8663_00000605.jsonl",
"type": "ScholarlyArticle",
"url": "http://link.springer.com/10.1007%2Fs00253-018-9364-z"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00253-018-9364-z'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00253-018-9364-z'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00253-018-9364-z'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00253-018-9364-z'
This table displays all metadata directly associated to this object as RDF triples.
258 TRIPLES
21 PREDICATES
74 URIs
19 LITERALS
7 BLANK NODES