Diversity and community structure of ammonia oxidizers in a marsh wetland of the northeast China View Full Text


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Article Info

DATE

2018-10

AUTHORS

Dawen Gao, Fengqin Liu, Lu Li, Chuhong Chen, Hong Liang

ABSTRACT

As an interface of terrestrial and aquatic ecosystems, wetland is a hotspot of the global nitrogen cycle. Ammonia oxidation is an essential part of the nitrogen cycle and is conducted by ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB). Based on the amoA gene, the distribution and genetic diversity of AOA and AOB in the marsh wetland soil with different soil layers and vegetation had been investigated. The result showed that both soil layer and vegetation significantly influenced the diversity and abundance of AOA and AOB. AOB dominated numerically in all soil samples. The average bacterial amoA gene copies (2.62 × 109 copies/g dry soil) was 100-fold higher than the average archaeal amoA gene copies. In the soil sample under the Phragmites australis, the highest archaeal amoA gene was in depth 20-40 cm, whereas the bacterial amoA gene was more abundant in depth 0-20 cm. For the soil under Calamagrostis angustifolia, the highest archaeal and bacterial amoA gene were both detected in depth 0-20 cm. The dominated AOA was cluster AII, which was most related to the amoA gene found in aquatic habitat. Cluster BI accounted for 59.1% of bacterial amoA gene and it was related to the amoA gene found in the terrestrial habitat. CCA analysis revealed that NO3- was the main factor for AOA and AOB community structure in the P. australis soil. However, NO2- and NH4+ were important factors for AOA and AOB in the soil under C. angustifolia. More... »

PAGES

8561-8571

References to SciGraph publications

  • 2015-12. Species, Abundance and Function of Ammonia-oxidizing Archaea in Inland Waters across China in SCIENTIFIC REPORTS
  • 2010-07. Characterization and quantification of ammonia-oxidizing archaea (AOA) and bacteria (AOB) in a nitrogen-removing reactor using T-RFLP and qPCR in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
  • 2015-09. Ammonia-oxidising bacteria not archaea dominate nitrification activity in semi-arid agricultural soil in SCIENTIFIC REPORTS
  • 2009-08. Biochemical cycling in the rhizosphere having an impact on global change in PLANT AND SOIL
  • 2012-05. Ammonia-oxidizing archaea have more important role than ammonia-oxidizing bacteria in ammonia oxidation of strongly acidic soils in THE ISME JOURNAL
  • 2005-09. Isolation of an autotrophic ammonia-oxidizing marine archaeon in NATURE
  • 2013-08. Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia-oxidizing archaea in THE ISME JOURNAL
  • 2013-07. Diversity and distribution of ammonia-oxidizing Archaea in the seasonally frozen soils in Northeastern China in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
  • 2006-08. Archaea predominate among ammonia-oxidizing prokaryotes in soils in NATURE
  • 2009-10. Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria in NATURE
  • 2013-11. Community structure and transcript responses of anammox bacteria, AOA, and AOB in mangrove sediment microcosms amended with ammonium and nitrite in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
  • 2012-03. Nitrification activity and putative ammonia-oxidizing archaea in acidic red soils in JOURNAL OF SOILS AND SEDIMENTS
  • 2015-07. pH regulates ammonia-oxidizing bacteria and archaea in paddy soils in Southern China in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
  • 2011-04. Quantitative analyses of ammonia-oxidizing Archaea and bacteria in the sediments of four nitrogen-rich wetlands in China in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
  • 2011-06. Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms in THE ISME JOURNAL
  • 2009-09. Nitrification driven by bacteria and not archaea in nitrogen-rich grassland soils in NATURE GEOSCIENCE
  • 2013-10. Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea in THE ISME JOURNAL
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    http://scigraph.springernature.com/pub.10.1007/s00253-018-9225-9

    DOI

    http://dx.doi.org/10.1007/s00253-018-9225-9

    DIMENSIONS

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    PUBMED

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