Monitoring of a pyrite-oxidising bacterial population using DNA single-strand conformation polymorphism and microscopic techniques View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2002-10

AUTHORS

F. Battaglia-Brunet, M. Clarens, P. d'Hugues, J. Godon, S. Foucher, D. Morin

ABSTRACT

The single-strand conformation polymorphism (SSCP) technique was used to study the evolution of a bacterial consortium during the batch oxidation of a cobaltiferous pyrite in two types of bio-reactor: a bubble column and a classical stirred tank. Sequencing 16S rDNA revealed the presence of three organisms affiliated to Leptospirillum ferrooxidans, Acidithiobacillus thiooxidans and Sulfobacillus thermosulfidooxidans, respectively. Attempts were made to determine the proportions of bacteria attached to solid particles or freely suspended in the medium using a combination of PCR-SSCP and a microscopic technique. Ac. thiooxidans-related bacteria were dominant in the liquid during the early phase of the batch, but were later supplanted by L. ferrooxidans-related bacteria. L. ferrooxidans-related organisms were always in the majority on the solids. The growth of S. thermosulfidooxidans-related bacteria seemed to be favoured by the bubble-column reactor. More... »

PAGES

206-211

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s00253-002-1095-4

DOI

http://dx.doi.org/10.1007/s00253-002-1095-4

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1036826176

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/12382065


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0605", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Microbiology", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Bacteria", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Bioreactors", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA, Bacterial", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA, Ribosomal", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Environmental Monitoring", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Iron", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Mining", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Polymorphism, Restriction Fragment Length", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Polymorphism, Single-Stranded Conformational", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "RNA, Bacterial", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "RNA, Ribosomal, 16S", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Sulfides", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Bureau de Recherches G\u00e9ologiques et Mini\u00e8res", 
          "id": "https://www.grid.ac/institutes/grid.16117.30", 
          "name": [
            "BRGM, Environment and Process Division, Biotechnology Unit, 3 avenue Claude Guillemin, BP 6009, 45060 Orl\u00e9ans cedex 2, France"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Battaglia-Brunet", 
        "givenName": "F.", 
        "id": "sg:person.01305166726.10", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01305166726.10"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "BIO-ID, P\u00e9pini\u00e8re d'Entreprise EOLE, 10 avenue du champs de Mars, 11100 Narbonne, France"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Clarens", 
        "givenName": "M.", 
        "id": "sg:person.01364133261.36", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01364133261.36"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Bureau de Recherches G\u00e9ologiques et Mini\u00e8res", 
          "id": "https://www.grid.ac/institutes/grid.16117.30", 
          "name": [
            "BRGM, Environment and Process Division, Biotechnology Unit, 3 avenue Claude Guillemin, BP 6009, 45060 Orl\u00e9ans cedex 2, France"
          ], 
          "type": "Organization"
        }, 
        "familyName": "d'Hugues", 
        "givenName": "P.", 
        "id": "sg:person.01131010503.51", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01131010503.51"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Laboratoire de Biotechnologie de l'Environnement", 
          "id": "https://www.grid.ac/institutes/grid.419083.7", 
          "name": [
            "INRA, Laboratory of Environmental Biotechnology, avenue des Etangs, 11100 Narbonne, France"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Godon", 
        "givenName": "J.", 
        "id": "sg:person.01341422306.16", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01341422306.16"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Bureau de Recherches G\u00e9ologiques et Mini\u00e8res", 
          "id": "https://www.grid.ac/institutes/grid.16117.30", 
          "name": [
            "BRGM, Environment and Process Division, Biotechnology Unit, 3 avenue Claude Guillemin, BP 6009, 45060 Orl\u00e9ans cedex 2, France"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Foucher", 
        "givenName": "S.", 
        "id": "sg:person.0676075047.27", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0676075047.27"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Bureau de Recherches G\u00e9ologiques et Mini\u00e8res", 
          "id": "https://www.grid.ac/institutes/grid.16117.30", 
          "name": [
            "BRGM, Environment and Process Division, Biotechnology Unit, 3 avenue Claude Guillemin, BP 6009, 45060 Orl\u00e9ans cedex 2, France"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Morin", 
        "givenName": "D.", 
        "id": "sg:person.01106170402.11", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01106170402.11"
        ], 
        "type": "Person"
      }
    ], 
    "datePublished": "2002-10", 
    "datePublishedReg": "2002-10-01", 
    "description": "The single-strand conformation polymorphism (SSCP) technique was used to study the evolution of a bacterial consortium during the batch oxidation of a cobaltiferous pyrite in two types of bio-reactor: a bubble column and a classical stirred tank. Sequencing 16S rDNA revealed the presence of three organisms affiliated to Leptospirillum ferrooxidans, Acidithiobacillus thiooxidans and Sulfobacillus thermosulfidooxidans, respectively. Attempts were made to determine the proportions of bacteria attached to solid particles or freely suspended in the medium using a combination of PCR-SSCP and a microscopic technique. Ac. thiooxidans-related bacteria were dominant in the liquid during the early phase of the batch, but were later supplanted by L. ferrooxidans-related bacteria. L. ferrooxidans-related organisms were always in the majority on the solids. The growth of S. thermosulfidooxidans-related bacteria seemed to be favoured by the bubble-column reactor.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1007/s00253-002-1095-4", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1083533", 
        "issn": [
          "0175-7598", 
          "1432-0614"
        ], 
        "name": "Applied Microbiology and Biotechnology", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "1", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "60"
      }
    ], 
    "name": "Monitoring of a pyrite-oxidising bacterial population using DNA single-strand conformation polymorphism and microscopic techniques", 
    "pagination": "206-211", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "af6d48eef0d603b4680e2714e024dd21840076fad5e940444aa5167d46be26c3"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "12382065"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "8406612"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/s00253-002-1095-4"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1036826176"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/s00253-002-1095-4", 
      "https://app.dimensions.ai/details/publication/pub.1036826176"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T22:32", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8690_00000514.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://link.springer.com/10.1007%2Fs00253-002-1095-4"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00253-002-1095-4'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00253-002-1095-4'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00253-002-1095-4'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00253-002-1095-4'


 

This table displays all metadata directly associated to this object as RDF triples.

157 TRIPLES      20 PREDICATES      41 URIs      33 LITERALS      21 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/s00253-002-1095-4 schema:about N222538a29c9a48f8b7e8ad90c9787d85
2 N29f04daeef7240c69887042d54fcf83f
3 N3fbec47166db402aa6b8140d56177387
4 N421bd8c568a64a0190f36f8e348e82b8
5 N5413c65afb39459d8211538ba61fca0e
6 N7119ce44c5b64471a78f5f51ee322152
7 N7ae10696c69d4ccdbe74e8cc78093557
8 N905d59828f2349898515a912de3c5e74
9 N9d30d1f491924aac8ef503ae3e4e3b63
10 Nc07a66e18a7745769082f46dd2184ec0
11 Nea855000bce2424eafb552a46a5c27c6
12 Nf3f9b4c51a5045248cb455d5f91c6f44
13 anzsrc-for:06
14 anzsrc-for:0605
15 schema:author N4aa628ca96b44561ad8b191056844105
16 schema:datePublished 2002-10
17 schema:datePublishedReg 2002-10-01
18 schema:description The single-strand conformation polymorphism (SSCP) technique was used to study the evolution of a bacterial consortium during the batch oxidation of a cobaltiferous pyrite in two types of bio-reactor: a bubble column and a classical stirred tank. Sequencing 16S rDNA revealed the presence of three organisms affiliated to Leptospirillum ferrooxidans, Acidithiobacillus thiooxidans and Sulfobacillus thermosulfidooxidans, respectively. Attempts were made to determine the proportions of bacteria attached to solid particles or freely suspended in the medium using a combination of PCR-SSCP and a microscopic technique. Ac. thiooxidans-related bacteria were dominant in the liquid during the early phase of the batch, but were later supplanted by L. ferrooxidans-related bacteria. L. ferrooxidans-related organisms were always in the majority on the solids. The growth of S. thermosulfidooxidans-related bacteria seemed to be favoured by the bubble-column reactor.
19 schema:genre research_article
20 schema:inLanguage en
21 schema:isAccessibleForFree false
22 schema:isPartOf N552c41e2769e4befb5fc798a90b05eaa
23 Ne9dbbeb7af67429f9a5ebf7e2d39e1ca
24 sg:journal.1083533
25 schema:name Monitoring of a pyrite-oxidising bacterial population using DNA single-strand conformation polymorphism and microscopic techniques
26 schema:pagination 206-211
27 schema:productId N15db19b570bd4a5ca05fe0747208f5ee
28 N5226e9b583b94ff38d56eb82e2b86ae9
29 Nb869069703644bf495a888ec62ab361d
30 Nd006ccf885164addb77b871888751fc9
31 Ndc3fe092b63948c18bd3538d3b6013ba
32 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036826176
33 https://doi.org/10.1007/s00253-002-1095-4
34 schema:sdDatePublished 2019-04-10T22:32
35 schema:sdLicense https://scigraph.springernature.com/explorer/license/
36 schema:sdPublisher Ncfb95e24a7184c48b37a65885a6816f0
37 schema:url http://link.springer.com/10.1007%2Fs00253-002-1095-4
38 sgo:license sg:explorer/license/
39 sgo:sdDataset articles
40 rdf:type schema:ScholarlyArticle
41 N15db19b570bd4a5ca05fe0747208f5ee schema:name dimensions_id
42 schema:value pub.1036826176
43 rdf:type schema:PropertyValue
44 N222538a29c9a48f8b7e8ad90c9787d85 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
45 schema:name Polymorphism, Restriction Fragment Length
46 rdf:type schema:DefinedTerm
47 N29f04daeef7240c69887042d54fcf83f schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
48 schema:name RNA, Bacterial
49 rdf:type schema:DefinedTerm
50 N2d48bd22440e46749557b28b4f2db045 schema:name BIO-ID, Pépinière d'Entreprise EOLE, 10 avenue du champs de Mars, 11100 Narbonne, France
51 rdf:type schema:Organization
52 N3b38ba8deb9941358a750aaf909358e7 rdf:first sg:person.01364133261.36
53 rdf:rest N502788f891af43e9b3bccb6ee3d316de
54 N3fbec47166db402aa6b8140d56177387 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
55 schema:name Bacteria
56 rdf:type schema:DefinedTerm
57 N421bd8c568a64a0190f36f8e348e82b8 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
58 schema:name DNA, Bacterial
59 rdf:type schema:DefinedTerm
60 N4aa628ca96b44561ad8b191056844105 rdf:first sg:person.01305166726.10
61 rdf:rest N3b38ba8deb9941358a750aaf909358e7
62 N502788f891af43e9b3bccb6ee3d316de rdf:first sg:person.01131010503.51
63 rdf:rest N6abe9576352f4088abf7895eef69d194
64 N5226e9b583b94ff38d56eb82e2b86ae9 schema:name readcube_id
65 schema:value af6d48eef0d603b4680e2714e024dd21840076fad5e940444aa5167d46be26c3
66 rdf:type schema:PropertyValue
67 N5413c65afb39459d8211538ba61fca0e schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
68 schema:name Polymorphism, Single-Stranded Conformational
69 rdf:type schema:DefinedTerm
70 N552c41e2769e4befb5fc798a90b05eaa schema:volumeNumber 60
71 rdf:type schema:PublicationVolume
72 N5f005f2fb24b40148a6a3c36a1dce734 rdf:first sg:person.01106170402.11
73 rdf:rest rdf:nil
74 N6abe9576352f4088abf7895eef69d194 rdf:first sg:person.01341422306.16
75 rdf:rest N9c2203170c674f13accb85b9976e956b
76 N7119ce44c5b64471a78f5f51ee322152 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
77 schema:name Bioreactors
78 rdf:type schema:DefinedTerm
79 N7ae10696c69d4ccdbe74e8cc78093557 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
80 schema:name RNA, Ribosomal, 16S
81 rdf:type schema:DefinedTerm
82 N905d59828f2349898515a912de3c5e74 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
83 schema:name Iron
84 rdf:type schema:DefinedTerm
85 N9c2203170c674f13accb85b9976e956b rdf:first sg:person.0676075047.27
86 rdf:rest N5f005f2fb24b40148a6a3c36a1dce734
87 N9d30d1f491924aac8ef503ae3e4e3b63 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
88 schema:name Mining
89 rdf:type schema:DefinedTerm
90 Nb869069703644bf495a888ec62ab361d schema:name doi
91 schema:value 10.1007/s00253-002-1095-4
92 rdf:type schema:PropertyValue
93 Nc07a66e18a7745769082f46dd2184ec0 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
94 schema:name DNA, Ribosomal
95 rdf:type schema:DefinedTerm
96 Ncfb95e24a7184c48b37a65885a6816f0 schema:name Springer Nature - SN SciGraph project
97 rdf:type schema:Organization
98 Nd006ccf885164addb77b871888751fc9 schema:name pubmed_id
99 schema:value 12382065
100 rdf:type schema:PropertyValue
101 Ndc3fe092b63948c18bd3538d3b6013ba schema:name nlm_unique_id
102 schema:value 8406612
103 rdf:type schema:PropertyValue
104 Ne9dbbeb7af67429f9a5ebf7e2d39e1ca schema:issueNumber 1
105 rdf:type schema:PublicationIssue
106 Nea855000bce2424eafb552a46a5c27c6 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
107 schema:name Sulfides
108 rdf:type schema:DefinedTerm
109 Nf3f9b4c51a5045248cb455d5f91c6f44 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
110 schema:name Environmental Monitoring
111 rdf:type schema:DefinedTerm
112 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
113 schema:name Biological Sciences
114 rdf:type schema:DefinedTerm
115 anzsrc-for:0605 schema:inDefinedTermSet anzsrc-for:
116 schema:name Microbiology
117 rdf:type schema:DefinedTerm
118 sg:journal.1083533 schema:issn 0175-7598
119 1432-0614
120 schema:name Applied Microbiology and Biotechnology
121 rdf:type schema:Periodical
122 sg:person.01106170402.11 schema:affiliation https://www.grid.ac/institutes/grid.16117.30
123 schema:familyName Morin
124 schema:givenName D.
125 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01106170402.11
126 rdf:type schema:Person
127 sg:person.01131010503.51 schema:affiliation https://www.grid.ac/institutes/grid.16117.30
128 schema:familyName d'Hugues
129 schema:givenName P.
130 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01131010503.51
131 rdf:type schema:Person
132 sg:person.01305166726.10 schema:affiliation https://www.grid.ac/institutes/grid.16117.30
133 schema:familyName Battaglia-Brunet
134 schema:givenName F.
135 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01305166726.10
136 rdf:type schema:Person
137 sg:person.01341422306.16 schema:affiliation https://www.grid.ac/institutes/grid.419083.7
138 schema:familyName Godon
139 schema:givenName J.
140 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01341422306.16
141 rdf:type schema:Person
142 sg:person.01364133261.36 schema:affiliation N2d48bd22440e46749557b28b4f2db045
143 schema:familyName Clarens
144 schema:givenName M.
145 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01364133261.36
146 rdf:type schema:Person
147 sg:person.0676075047.27 schema:affiliation https://www.grid.ac/institutes/grid.16117.30
148 schema:familyName Foucher
149 schema:givenName S.
150 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0676075047.27
151 rdf:type schema:Person
152 https://www.grid.ac/institutes/grid.16117.30 schema:alternateName Bureau de Recherches Géologiques et Minières
153 schema:name BRGM, Environment and Process Division, Biotechnology Unit, 3 avenue Claude Guillemin, BP 6009, 45060 Orléans cedex 2, France
154 rdf:type schema:Organization
155 https://www.grid.ac/institutes/grid.419083.7 schema:alternateName Laboratoire de Biotechnologie de l'Environnement
156 schema:name INRA, Laboratory of Environmental Biotechnology, avenue des Etangs, 11100 Narbonne, France
157 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...