Prokaryotic Genome Size and SSU rDNA Copy Number: Estimation of Microbial Relative Abundance from a Mixed Population View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

1999-08

AUTHORS

G.B. Fogel, C.R. Collins, J. Li, C.F. Brunk

ABSTRACT

Determination of the relative abundance of a specific prokaryote in an environmental sample is of major interest in applied and environmental microbiology. Relative abundance can be calculated using knowledge of SSU rDNA copy number, amount of SSU rDNA in the sample, and a weighted average estimate of the genome sizes for organisms in the original sample. By surveying the literature, we provide estimates of genome size and SSU rDNA copy number for 303 and 101 prokaryotes, respectively. This compilation can be used to make reasonable estimates for a wide range of organisms in the calculation of relative abundance. A statistical analysis suggests that no correlation exists between genome size and SSU rDNA copy number. A phylogenetic analysis is used to offer insights into the evolution of both genome size and SSU rDNA copy number. More... »

PAGES

93-113

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s002489900162

DOI

http://dx.doi.org/10.1007/s002489900162

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1001555886

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/10441703


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