Impacts of Carbon and Flooding on Soil Microbial Communities: Phospholipid Fatty Acid Profiles and Substrate Utilization Patterns View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

1998-05

AUTHORS

D.A. Bossio, K.M. Scow

ABSTRACT

Phospholipid fatty acid (PLFA) profiles provide a robust measure that can be used to fingerprint the structure of soil microbial communities, and measure their biomass. A replicated field trial, with gradients in substrate and O2 availability created by straw incorporation and flooding was used to test the ability of PLFA to discriminate soil microbial communities in different management regimes. Another objective was to test the usefulness, on a large scale, of some of the proposed interpretations of PLFA biomarkers. Using a direct gradient statistical analysis method, PLFA profiles were found to be very sensitive to flooding and straw treatments. Relative abundances of monounsaturated fatty acids were reduced with flooding and increased with added carbon, consistent with their proposed interpretations as indicators of aerobic conditions and high substrate availability. The cyclopropyl fatty acids were not useful as taxonomic indicators of respiratory type, although their responses were consistent with their proposed use as growth condition indicators. Branched fatty acids decreased, as a group, in response to high substrate conditions. A specific biomarker for Type II methanotrophs was not found in this rice soil, even under high carbon, low O2 conditions, which resulted in methane exposure in the soil. Direct comparison of PLFA and substrate utilization patterns indicated that Biolog patterns are highly selective, and do not reflect compositional changes in soil communities. More... »

PAGES

265-278

Journal

TITLE

Microbial Ecology

ISSUE

3-4

VOLUME

35

Author Affiliations

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s002489900082

DOI

http://dx.doi.org/10.1007/s002489900082

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1010354852

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/9569284


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0503", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Soil Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/05", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Environmental Sciences", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "University of California, Davis", 
          "id": "https://www.grid.ac/institutes/grid.27860.3b", 
          "name": [
            "Department of Land Air and Water Resources, University of California, Davis, CA 95616, USA, US"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Bossio", 
        "givenName": "D.A.", 
        "id": "sg:person.01065107342.35", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01065107342.35"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of California, Davis", 
          "id": "https://www.grid.ac/institutes/grid.27860.3b", 
          "name": [
            "Department of Land Air and Water Resources, University of California, Davis, CA 95616, USA, US"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Scow", 
        "givenName": "K.M.", 
        "id": "sg:person.01261046100.02", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01261046100.02"
        ], 
        "type": "Person"
      }
    ], 
    "datePublished": "1998-05", 
    "datePublishedReg": "1998-05-01", 
    "description": " Phospholipid fatty acid (PLFA) profiles provide a robust measure that can be used to fingerprint the structure of soil microbial communities, and measure their biomass. A replicated field trial, with gradients in substrate and O2 availability created by straw incorporation and flooding was used to test the ability of PLFA to discriminate soil microbial communities in different management regimes. Another objective was to test the usefulness, on a large scale, of some of the proposed interpretations of PLFA biomarkers. Using a direct gradient statistical analysis method, PLFA profiles were found to be very sensitive to flooding and straw treatments. Relative abundances of monounsaturated fatty acids were reduced with flooding and increased with added carbon, consistent with their proposed interpretations as indicators of aerobic conditions and high substrate availability. The cyclopropyl fatty acids were not useful as taxonomic indicators of respiratory type, although their responses were consistent with their proposed use as growth condition indicators. Branched fatty acids decreased, as a group, in response to high substrate conditions. A specific biomarker for Type II methanotrophs was not found in this rice soil, even under high carbon, low O2 conditions, which resulted in methane exposure in the soil. Direct comparison of PLFA and substrate utilization patterns indicated that Biolog patterns are highly selective, and do not reflect compositional changes in soil communities.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1007/s002489900082", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1081458", 
        "issn": [
          "0095-3628", 
          "1432-184X"
        ], 
        "name": "Microbial Ecology", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "3-4", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "35"
      }
    ], 
    "name": "Impacts of Carbon and Flooding on Soil Microbial Communities: Phospholipid Fatty Acid Profiles and Substrate Utilization Patterns", 
    "pagination": "265-278", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "3154b77aa7933125581a32c1cc380152a29a5a7e8491804087038cd332da7391"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "9569284"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "7500663"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/s002489900082"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1010354852"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/s002489900082", 
      "https://app.dimensions.ai/details/publication/pub.1010354852"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T20:41", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8684_00000486.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://link.springer.com/10.1007/s002489900082"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s002489900082'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s002489900082'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s002489900082'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s002489900082'


 

This table displays all metadata directly associated to this object as RDF triples.

76 TRIPLES      20 PREDICATES      29 URIs      21 LITERALS      9 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/s002489900082 schema:about anzsrc-for:05
2 anzsrc-for:0503
3 schema:author N9a7433884efc4078864d04bfd7d85bbb
4 schema:datePublished 1998-05
5 schema:datePublishedReg 1998-05-01
6 schema:description Phospholipid fatty acid (PLFA) profiles provide a robust measure that can be used to fingerprint the structure of soil microbial communities, and measure their biomass. A replicated field trial, with gradients in substrate and O2 availability created by straw incorporation and flooding was used to test the ability of PLFA to discriminate soil microbial communities in different management regimes. Another objective was to test the usefulness, on a large scale, of some of the proposed interpretations of PLFA biomarkers. Using a direct gradient statistical analysis method, PLFA profiles were found to be very sensitive to flooding and straw treatments. Relative abundances of monounsaturated fatty acids were reduced with flooding and increased with added carbon, consistent with their proposed interpretations as indicators of aerobic conditions and high substrate availability. The cyclopropyl fatty acids were not useful as taxonomic indicators of respiratory type, although their responses were consistent with their proposed use as growth condition indicators. Branched fatty acids decreased, as a group, in response to high substrate conditions. A specific biomarker for Type II methanotrophs was not found in this rice soil, even under high carbon, low O2 conditions, which resulted in methane exposure in the soil. Direct comparison of PLFA and substrate utilization patterns indicated that Biolog patterns are highly selective, and do not reflect compositional changes in soil communities.
7 schema:genre research_article
8 schema:inLanguage en
9 schema:isAccessibleForFree false
10 schema:isPartOf Nf304321be94e4a0483208d8bd489103e
11 Nf7df971a036b46e4816297dd5b24ceb7
12 sg:journal.1081458
13 schema:name Impacts of Carbon and Flooding on Soil Microbial Communities: Phospholipid Fatty Acid Profiles and Substrate Utilization Patterns
14 schema:pagination 265-278
15 schema:productId N2d99e68878de43bb8e4fc69e732c6425
16 N332fd372198e445bb05cd2841c15d966
17 N85b6b0e412af4830ac128e5d63c1ab13
18 Nb64195309c5c4622b6f6afc186e364e3
19 Nddadeff300cd4dd992c8995856844746
20 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010354852
21 https://doi.org/10.1007/s002489900082
22 schema:sdDatePublished 2019-04-10T20:41
23 schema:sdLicense https://scigraph.springernature.com/explorer/license/
24 schema:sdPublisher Nbf6d4a849e4c464d979dc96fcc60e5be
25 schema:url http://link.springer.com/10.1007/s002489900082
26 sgo:license sg:explorer/license/
27 sgo:sdDataset articles
28 rdf:type schema:ScholarlyArticle
29 N2d99e68878de43bb8e4fc69e732c6425 schema:name dimensions_id
30 schema:value pub.1010354852
31 rdf:type schema:PropertyValue
32 N332fd372198e445bb05cd2841c15d966 schema:name readcube_id
33 schema:value 3154b77aa7933125581a32c1cc380152a29a5a7e8491804087038cd332da7391
34 rdf:type schema:PropertyValue
35 N79fbe74c48f04711b906dd8095ace989 rdf:first sg:person.01261046100.02
36 rdf:rest rdf:nil
37 N85b6b0e412af4830ac128e5d63c1ab13 schema:name doi
38 schema:value 10.1007/s002489900082
39 rdf:type schema:PropertyValue
40 N9a7433884efc4078864d04bfd7d85bbb rdf:first sg:person.01065107342.35
41 rdf:rest N79fbe74c48f04711b906dd8095ace989
42 Nb64195309c5c4622b6f6afc186e364e3 schema:name pubmed_id
43 schema:value 9569284
44 rdf:type schema:PropertyValue
45 Nbf6d4a849e4c464d979dc96fcc60e5be schema:name Springer Nature - SN SciGraph project
46 rdf:type schema:Organization
47 Nddadeff300cd4dd992c8995856844746 schema:name nlm_unique_id
48 schema:value 7500663
49 rdf:type schema:PropertyValue
50 Nf304321be94e4a0483208d8bd489103e schema:volumeNumber 35
51 rdf:type schema:PublicationVolume
52 Nf7df971a036b46e4816297dd5b24ceb7 schema:issueNumber 3-4
53 rdf:type schema:PublicationIssue
54 anzsrc-for:05 schema:inDefinedTermSet anzsrc-for:
55 schema:name Environmental Sciences
56 rdf:type schema:DefinedTerm
57 anzsrc-for:0503 schema:inDefinedTermSet anzsrc-for:
58 schema:name Soil Sciences
59 rdf:type schema:DefinedTerm
60 sg:journal.1081458 schema:issn 0095-3628
61 1432-184X
62 schema:name Microbial Ecology
63 rdf:type schema:Periodical
64 sg:person.01065107342.35 schema:affiliation https://www.grid.ac/institutes/grid.27860.3b
65 schema:familyName Bossio
66 schema:givenName D.A.
67 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01065107342.35
68 rdf:type schema:Person
69 sg:person.01261046100.02 schema:affiliation https://www.grid.ac/institutes/grid.27860.3b
70 schema:familyName Scow
71 schema:givenName K.M.
72 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01261046100.02
73 rdf:type schema:Person
74 https://www.grid.ac/institutes/grid.27860.3b schema:alternateName University of California, Davis
75 schema:name Department of Land Air and Water Resources, University of California, Davis, CA 95616, USA, US
76 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...