Composition and Predictive Functional Analysis of Bacterial Communities in Seawater, Sediment and Sponges in the Spermonde Archipelago, Indonesia View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2015-11

AUTHORS

Daniel F. R. Cleary, Nicole J. de Voogd, Ana R. M. Polónia, Rossana Freitas, Newton C. M. Gomes

ABSTRACT

In this study, we used a 16S rRNA gene barcoded pyrosequencing approach to sample bacterial communities from six biotopes, namely, seawater, sediment and four sponge species (Stylissa carteri, Stylissa massa, Xestospongia testudinaria and Hyrtios erectus) inhabiting coral reefs of the Spermonde Archipelago, South Sulawesi, Indonesia. Samples were collected along a pronounced onshore to offshore environmental gradient. Our goals were to (1) compare higher taxon abundance among biotopes, (2) test to what extent variation in bacterial composition can be explained by the biotope versus environment, (3) identify dominant (>300 sequences) bacterial operational taxonomic units (OTUs) and their closest known relatives and (4) assign putative functions to the sponge bacterial communities using a recently developed predictive metagenomic approach. We observed marked differences in bacterial composition and the relative abundance of the most abundant phyla, classes and orders among sponge species, seawater and sediment. Although all biotopes housed compositionally distinct bacterial communities, there were three prominent clusters. These included (1) both Stylissa species and seawater, (2) X. testudinaria and H. erectus and (3) sediment. Bacterial communities sampled from the same biotope, but different environments (based on proximity to the coast) were much more similar than bacterial communities from different biotopes in the same environment. The biotope thus appears to be a much more important structuring force than the surrounding environment. There were concomitant differences in the predicted counts of KEGG orthologs (KOs) suggesting that bacterial communities housed in different sponge species, sediment and seawater perform distinct functions. In particular, the bacterial communities of both Stylissa species were predicted to be enriched for KOs related to chemotaxis, nitrification and denitrification whereas bacterial communities in X. testudinaria and H. erectus were predicted to be enriched for KOs related to the toxin-antitoxin (TA) system, nutrient starvation and heavy metal export. More... »

PAGES

889-903

References to SciGraph publications

  • 2012-03. Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges in THE ISME JOURNAL
  • 2008-03. Do associated microbial abundances impact marine demosponge pumping rates and tissue densities? in OECOLOGIA
  • 2002. Family Petrosiidae Van Soest, 1980 in SYSTEMA PORIFERA
  • 2010-04. Activity profiles for marine sponge-associated bacteria obtained by 16S rRNA vs 16S rRNA gene comparisons in THE ISME JOURNAL
  • 2013-09. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences in NATURE BIOTECHNOLOGY
  • 2011-04. Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea in THE ISME JOURNAL
  • 2002. Family Dictyonellidae Van Soest, Diaz & Pomponi, 1990 in SYSTEMA PORIFERA
  • 2012-05. Spatial Variability in Secondary Metabolites of the Indo-Pacific Sponge Stylissa massa in JOURNAL OF CHEMICAL ECOLOGY
  • 2012-11. Salt marsh sediment diversity: a test of the variability of the rare biosphere among environmental replicates in THE ISME JOURNAL
  • 2010-05. QIIME allows analysis of high-throughput community sequencing data in NATURE METHODS
  • 2013-01. Evidence for Selective Bacterial Community Structuring in the Freshwater Sponge Ephydatia fluviatilis in MICROBIAL ECOLOGY
  • 2012-09. Genomic insights into the marine sponge microbiome in NATURE REVIEWS MICROBIOLOGY
  • 2013-10. UPARSE: highly accurate OTU sequences from microbial amplicon reads in NATURE METHODS
  • 2010-12. Coral growth on three reefs: development of recovery benchmarks using a space for time approach in CORAL REEFS
  • 2014-06. Host-specificity among abundant and rare taxa in the sponge microbiome in THE ISME JOURNAL
  • 2013-08. Metatranscriptomics reveal differences in in situ energy and nitrogen metabolism among hydrothermal vent snail symbionts in THE ISME JOURNAL
  • 2001-10. Ecologically meaningful transformations for ordination of species data in OECOLOGIA
  • 2003-04. An examination of scale of assessment, logging and ENSO-induced fires on butterfly diversity in Borneo in OECOLOGIA
  • 2001-05. Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis in PLANT AND SOIL
  • 2010-03. Is increased calcarinid (foraminifera) abundance indicating a larger role for macro-algae in Indonesian Plio-Pleistocene coral reefs? in CORAL REEFS
  • 2013-01. The arthropod, but not the vertebrate host or its environment, dictates bacterial community composition of fleas and ticks in THE ISME JOURNAL
  • 2012-12. Bacterial and Archaeal Symbionts in the South China Sea Sponge Phakellia fusca: Community Structure, Relative Abundance, and Ammonia-Oxidizing Populations in JOURNAL OF MARINE BIOTECHNOLOGY
  • 2014-04. Composition of Archaea in Seawater, Sediment, and Sponges in the Kepulauan Seribu Reef System, Indonesia in MICROBIAL ECOLOGY
  • 2013-04. Unique and species-specific microbial communities in Oscarella lobularis and other Mediterranean Oscarella species (Porifera: Homoscleromorpha) in MARINE BIOLOGY
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s00248-015-0632-5

    DOI

    http://dx.doi.org/10.1007/s00248-015-0632-5

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1042793628

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/26072397


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