PLFA Analyses of Microbial Communities Associated with PAH-Contaminated Riverbank Sediment View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2012-10

AUTHORS

Brenda Pratt, Roland Riesen, Carl G. Johnston

ABSTRACT

Sediment contaminated with polycyclic aromatic hydrocarbons (PAHs) is widely distributed in aquatic ecosystems. The microbial community structure of riverbank PAH-contaminated sediments was investigated using phospholipid-derived fatty acid (PLFA) analysis. Surface and subsurface riverbank sediment was collected from a highly contaminated site and from an uncontaminated site along the Mahoning River, OH. PAH concentrations, physical sediment characteristics, and other microbial community parameters (biomass as phospholipid phosphate (PLP) and activity) were also measured. PAHs were detected in all samples but were only quantifiable in the contaminated (250 μg/g g(-1)) subsurface sediment. Subsurface samples from both locations showed very similar PLP values and distribution of PLFAs, with 27-37 % of the microbial community structure being composed of sulfate reducing and other anaerobic bacteria. Principal components analysis indicated no correlation between PAH contamination and PLFA diversity. Although PLP and phospholipid fatty acid measurements of bacterial communities did not reflect the environmental differences among sites, the highly PAH-contaminated sediment showed the highest measured microbial activity (reduction of 1,200 nmol INT g(-1) h(-1)), likely from a population adapted to environmental pollutants, rates that are much higher than measured in many uncontaminated soil and sediment systems. These data warrant further investigation into community structure at the genetic level and indicate potential for bioremediation by indigenous microbes. More... »

PAGES

680-691

References to SciGraph publications

  • 1982-10. Measurement of Electron Transport System (ETS) activity in soil in MICROBIAL ECOLOGY
  • 2002-02. Lipid Analysis of the Response of a Sedimentary Microbial Community to Polycyclic Aromatic Hydrocarbons in MICROBIAL ECOLOGY
  • 2004-09. Bioremediation of Petroleum Contaminated Beach Sediments: Use of Crude Palm Oil and Fatty Acids to Enhance Indigenous Biodegradation in WATER, AIR, & SOIL POLLUTION
  • 1991-06. An improved and accurate method for determining the dehydrogenase activity of soils with iodonitrotetrazolium chloride in BIOLOGY AND FERTILITY OF SOILS
  • 2007-08. Analysis of diurnal and vertical microbial diversity of a hypersaline microbial mat in ARCHIVES OF MICROBIOLOGY
  • 2011-09. Effect of non-aqueous drilling fluid and its synthetic base oil on soil health as indicated by its dehydrogenase activity in ENVIRONMENTAL EARTH SCIENCES
  • 2009-01. Shifts in Microbial Community Composition Following Surface Application of Dredged River Sediments in MICROBIAL ECOLOGY
  • 1995-12. Copper in Scots pine forests around a heavy-metal smelter in south-western Finland in WATER, AIR, & SOIL POLLUTION
  • 2003-07. Effects of heavy metal contamination and remediation on soil microbial communities in the vicinity of a zinc smelter as indicated by analysis of microbial community phospholipid fatty acid profiles in BIOLOGY AND FERTILITY OF SOILS
  • 2006-11. Influence of microbial activity on plant–microbial competition for organic and inorganic nitrogen in PLANT AND SOIL
  • 2001-02. Optimisation of the dehydrogenase assay for measurement of indigenous microbial activity in beach sediments contaminated with petroleum in BIOTECHNOLOGY LETTERS
  • 2006-02. Microbial Community Analysis of Soils Contaminated with Lead, Chromium and Petroleum Hydrocarbons in MICROBIAL ECOLOGY
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s00248-012-0060-8

    DOI

    http://dx.doi.org/10.1007/s00248-012-0060-8

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1020472886

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/22584297


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "about": [
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0605", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Microbiology", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biological Sciences", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Bacteria", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Ecosystem", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Fatty Acids", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Geologic Sediments", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Phospholipids", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Polycyclic Aromatic Hydrocarbons", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Rivers", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Soil Pollutants", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Water Pollutants, Chemical", 
            "type": "DefinedTerm"
          }
        ], 
        "author": [
          {
            "affiliation": {
              "name": [
                "URS Corporation, 1375 Euclid Ave Suite 600, 44115, Cleveland, OH, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Pratt", 
            "givenName": "Brenda", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "name": [
                "Ecole d\u2019Ing\u00e9nieurs de Changins, Route de Duillier 50, Case postale 1148, CH-1260 Nyon 1, Switzerland"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Riesen", 
            "givenName": "Roland", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Youngstown State University", 
              "id": "https://www.grid.ac/institutes/grid.268467.9", 
              "name": [
                "Department of Biological Sciences, Youngstown State University, 44555, Youngstown, OH, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Johnston", 
            "givenName": "Carl G.", 
            "id": "sg:person.01032551441.99", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01032551441.99"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "https://doi.org/10.1046/j.1365-2672.2000.01058.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1001500436"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.apsoil.2008.03.006", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1002697425"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0167-7012(99)00069-x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1004387484"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.soilbio.2010.10.010", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1004449485"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.apsoil.2006.09.014", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1005173442"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1128/aem.67.4.1542-1550.2001", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1005443880"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1574-6941.2002.tb00940.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1009182340"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1574-6941.2002.tb00940.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1009182340"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.soilbio.2010.11.021", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1009358092"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.soilbio.2007.07.017", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1009410069"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00248-008-9410-y", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1010391721", 
              "https://doi.org/10.1007/s00248-008-9410-y"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00248-008-9410-y", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1010391721", 
              "https://doi.org/10.1007/s00248-008-9410-y"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s12665-010-0812-z", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1010972421", 
              "https://doi.org/10.1007/s12665-010-0812-z"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1574-6941.2002.tb01000.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012935100"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1574-6941.2002.tb01000.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012935100"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.soilbio.2010.07.020", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1014188780"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.seares.2009.10.002", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1016438546"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.soilbio.2006.12.023", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1018422752"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00248-005-0205-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1019956880", 
              "https://doi.org/10.1007/s00248-005-0205-0"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00248-005-0205-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1019956880", 
              "https://doi.org/10.1007/s00248-005-0205-0"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00477229", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020315382", 
              "https://doi.org/10.1007/bf00477229"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00477229", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020315382", 
              "https://doi.org/10.1007/bf00477229"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/0167-7012(96)00929-3", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1022306524"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.foodchem.2009.02.073", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024068863"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0038-0717(00)00060-2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024407904"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1023/a:1005613406948", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024504497", 
              "https://doi.org/10.1023/a:1005613406948"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02010449", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1025116083", 
              "https://doi.org/10.1007/bf02010449"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02010449", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1025116083", 
              "https://doi.org/10.1007/bf02010449"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1023/b:wate.0000038884.24326.88", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1025660973", 
              "https://doi.org/10.1023/b:wate.0000038884.24326.88"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.foodchem.2007.10.032", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1026226923"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1139/w05-144", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1026869921"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.orggeochem.2006.01.009", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028490935"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0146-6380(98)00174-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1030012236"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00248-001-1040-6", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1035049580", 
              "https://doi.org/10.1007/s00248-001-1040-6"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.geoderma.2009.02.003", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1035163529"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00374-003-0642-1", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036711759", 
              "https://doi.org/10.1007/s00374-003-0642-1"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.watres.2005.10.019", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039536746"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.envpol.2007.08.009", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1041268375"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00335770", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1044690468", 
              "https://doi.org/10.1007/bf00335770"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s11104-006-9142-z", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1045312592", 
              "https://doi.org/10.1007/s11104-006-9142-z"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0964-8305(00)00100-1", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1045975849"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0167-7012(02)00251-8", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047735375"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0167-7012(02)00251-8", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047735375"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00203-007-0229-6", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1048085370", 
              "https://doi.org/10.1007/s00203-007-0229-6"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00203-007-0229-6", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1048085370", 
              "https://doi.org/10.1007/s00203-007-0229-6"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.apgeochem.2007.10.012", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050274353"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.apsoil.2008.07.005", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050533298"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0929-1393(02)00025-2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051518426"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.soilbio.2004.05.002", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1053200461"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0146-6380(99)00077-7", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1053630389"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1021/es803348g", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1055515864"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1021/es803348g", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1055515864"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2307/1310976", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1069433280"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2307/3544109", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1070366227"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.3354/meps062121", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1071166336"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1077159414", 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1077202056", 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1083312580", 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2012-10", 
        "datePublishedReg": "2012-10-01", 
        "description": "Sediment contaminated with polycyclic aromatic hydrocarbons (PAHs) is widely distributed in aquatic ecosystems. The microbial community structure of riverbank PAH-contaminated sediments was investigated using phospholipid-derived fatty acid (PLFA) analysis. Surface and subsurface riverbank sediment was collected from a highly contaminated site and from an uncontaminated site along the Mahoning River, OH. PAH concentrations, physical sediment characteristics, and other microbial community parameters (biomass as phospholipid phosphate (PLP) and activity) were also measured. PAHs were detected in all samples but were only quantifiable in the contaminated (250 \u03bcg/g g(-1)) subsurface sediment. Subsurface samples from both locations showed very similar PLP values and distribution of PLFAs, with 27-37 % of the microbial community structure being composed of sulfate reducing and other anaerobic bacteria. Principal components analysis indicated no correlation between PAH contamination and PLFA diversity. Although PLP and phospholipid fatty acid measurements of bacterial communities did not reflect the environmental differences among sites, the highly PAH-contaminated sediment showed the highest measured microbial activity (reduction of 1,200 nmol INT g(-1) h(-1)), likely from a population adapted to environmental pollutants, rates that are much higher than measured in many uncontaminated soil and sediment systems. These data warrant further investigation into community structure at the genetic level and indicate potential for bioremediation by indigenous microbes.", 
        "genre": "research_article", 
        "id": "sg:pub.10.1007/s00248-012-0060-8", 
        "inLanguage": [
          "en"
        ], 
        "isAccessibleForFree": false, 
        "isPartOf": [
          {
            "id": "sg:journal.1081458", 
            "issn": [
              "0095-3628", 
              "1432-184X"
            ], 
            "name": "Microbial Ecology", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "3", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "64"
          }
        ], 
        "name": "PLFA Analyses of Microbial Communities Associated with PAH-Contaminated Riverbank Sediment", 
        "pagination": "680-691", 
        "productId": [
          {
            "name": "readcube_id", 
            "type": "PropertyValue", 
            "value": [
              "618ca300a75ee214343e09b9fb8ee4e78af05507f37eb95fb9356a38171a2360"
            ]
          }, 
          {
            "name": "pubmed_id", 
            "type": "PropertyValue", 
            "value": [
              "22584297"
            ]
          }, 
          {
            "name": "nlm_unique_id", 
            "type": "PropertyValue", 
            "value": [
              "7500663"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1007/s00248-012-0060-8"
            ]
          }, 
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1020472886"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1007/s00248-012-0060-8", 
          "https://app.dimensions.ai/details/publication/pub.1020472886"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2019-04-10T14:01", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8660_00000481.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "http://link.springer.com/10.1007/s00248-012-0060-8"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00248-012-0060-8'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00248-012-0060-8'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00248-012-0060-8'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00248-012-0060-8'


     

    This table displays all metadata directly associated to this object as RDF triples.

    277 TRIPLES      21 PREDICATES      87 URIs      30 LITERALS      18 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1007/s00248-012-0060-8 schema:about N23de168a75d94196833051bbb7c714be
    2 N41081214bada490b979c24e1720aef6d
    3 N4cbc7983828445c2afc1e4071b96016d
    4 N52c09e2688df42bf8ad6d965af58f395
    5 N764db898e656497f9d5e7949c265e619
    6 N78d8466b9c8b4a01b070d0923cf45b09
    7 N8c7ceea2a47e412d98e9216383cc4fe6
    8 N9db01a1ac0f8494c8a074339a04dedac
    9 Naccc18ffaed249b9b44ac4d06f52a3c6
    10 anzsrc-for:06
    11 anzsrc-for:0605
    12 schema:author N765172a9d9214454b9c94e2587cce1ca
    13 schema:citation sg:pub.10.1007/bf00335770
    14 sg:pub.10.1007/bf00477229
    15 sg:pub.10.1007/bf02010449
    16 sg:pub.10.1007/s00203-007-0229-6
    17 sg:pub.10.1007/s00248-001-1040-6
    18 sg:pub.10.1007/s00248-005-0205-0
    19 sg:pub.10.1007/s00248-008-9410-y
    20 sg:pub.10.1007/s00374-003-0642-1
    21 sg:pub.10.1007/s11104-006-9142-z
    22 sg:pub.10.1007/s12665-010-0812-z
    23 sg:pub.10.1023/a:1005613406948
    24 sg:pub.10.1023/b:wate.0000038884.24326.88
    25 https://app.dimensions.ai/details/publication/pub.1077159414
    26 https://app.dimensions.ai/details/publication/pub.1077202056
    27 https://app.dimensions.ai/details/publication/pub.1083312580
    28 https://doi.org/10.1016/0167-7012(96)00929-3
    29 https://doi.org/10.1016/j.apgeochem.2007.10.012
    30 https://doi.org/10.1016/j.apsoil.2006.09.014
    31 https://doi.org/10.1016/j.apsoil.2008.03.006
    32 https://doi.org/10.1016/j.apsoil.2008.07.005
    33 https://doi.org/10.1016/j.envpol.2007.08.009
    34 https://doi.org/10.1016/j.foodchem.2007.10.032
    35 https://doi.org/10.1016/j.foodchem.2009.02.073
    36 https://doi.org/10.1016/j.geoderma.2009.02.003
    37 https://doi.org/10.1016/j.orggeochem.2006.01.009
    38 https://doi.org/10.1016/j.seares.2009.10.002
    39 https://doi.org/10.1016/j.soilbio.2004.05.002
    40 https://doi.org/10.1016/j.soilbio.2006.12.023
    41 https://doi.org/10.1016/j.soilbio.2007.07.017
    42 https://doi.org/10.1016/j.soilbio.2010.07.020
    43 https://doi.org/10.1016/j.soilbio.2010.10.010
    44 https://doi.org/10.1016/j.soilbio.2010.11.021
    45 https://doi.org/10.1016/j.watres.2005.10.019
    46 https://doi.org/10.1016/s0038-0717(00)00060-2
    47 https://doi.org/10.1016/s0146-6380(98)00174-0
    48 https://doi.org/10.1016/s0146-6380(99)00077-7
    49 https://doi.org/10.1016/s0167-7012(02)00251-8
    50 https://doi.org/10.1016/s0167-7012(99)00069-x
    51 https://doi.org/10.1016/s0929-1393(02)00025-2
    52 https://doi.org/10.1016/s0964-8305(00)00100-1
    53 https://doi.org/10.1021/es803348g
    54 https://doi.org/10.1046/j.1365-2672.2000.01058.x
    55 https://doi.org/10.1111/j.1574-6941.2002.tb00940.x
    56 https://doi.org/10.1111/j.1574-6941.2002.tb01000.x
    57 https://doi.org/10.1128/aem.67.4.1542-1550.2001
    58 https://doi.org/10.1139/w05-144
    59 https://doi.org/10.2307/1310976
    60 https://doi.org/10.2307/3544109
    61 https://doi.org/10.3354/meps062121
    62 schema:datePublished 2012-10
    63 schema:datePublishedReg 2012-10-01
    64 schema:description Sediment contaminated with polycyclic aromatic hydrocarbons (PAHs) is widely distributed in aquatic ecosystems. The microbial community structure of riverbank PAH-contaminated sediments was investigated using phospholipid-derived fatty acid (PLFA) analysis. Surface and subsurface riverbank sediment was collected from a highly contaminated site and from an uncontaminated site along the Mahoning River, OH. PAH concentrations, physical sediment characteristics, and other microbial community parameters (biomass as phospholipid phosphate (PLP) and activity) were also measured. PAHs were detected in all samples but were only quantifiable in the contaminated (250 μg/g g(-1)) subsurface sediment. Subsurface samples from both locations showed very similar PLP values and distribution of PLFAs, with 27-37 % of the microbial community structure being composed of sulfate reducing and other anaerobic bacteria. Principal components analysis indicated no correlation between PAH contamination and PLFA diversity. Although PLP and phospholipid fatty acid measurements of bacterial communities did not reflect the environmental differences among sites, the highly PAH-contaminated sediment showed the highest measured microbial activity (reduction of 1,200 nmol INT g(-1) h(-1)), likely from a population adapted to environmental pollutants, rates that are much higher than measured in many uncontaminated soil and sediment systems. These data warrant further investigation into community structure at the genetic level and indicate potential for bioremediation by indigenous microbes.
    65 schema:genre research_article
    66 schema:inLanguage en
    67 schema:isAccessibleForFree false
    68 schema:isPartOf N14ee329a892b4e9880206d69c443a265
    69 N9bf2fb519b6140dba001a997d2d99d66
    70 sg:journal.1081458
    71 schema:name PLFA Analyses of Microbial Communities Associated with PAH-Contaminated Riverbank Sediment
    72 schema:pagination 680-691
    73 schema:productId N08c285b069c14b548cc52bd4b2207138
    74 N688476b3a6914751b041f8c60497a6f9
    75 N8139263521734ee78c0242da631941fd
    76 Nae38d691b71e42a58c5d135ea62438c7
    77 Ndf84a1298d3843a6a3a287ade8c5e7bf
    78 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020472886
    79 https://doi.org/10.1007/s00248-012-0060-8
    80 schema:sdDatePublished 2019-04-10T14:01
    81 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    82 schema:sdPublisher N0ebf92bc1dcc40b0ba0feb9d8d3ac5f6
    83 schema:url http://link.springer.com/10.1007/s00248-012-0060-8
    84 sgo:license sg:explorer/license/
    85 sgo:sdDataset articles
    86 rdf:type schema:ScholarlyArticle
    87 N08c285b069c14b548cc52bd4b2207138 schema:name doi
    88 schema:value 10.1007/s00248-012-0060-8
    89 rdf:type schema:PropertyValue
    90 N0ebf92bc1dcc40b0ba0feb9d8d3ac5f6 schema:name Springer Nature - SN SciGraph project
    91 rdf:type schema:Organization
    92 N14ee329a892b4e9880206d69c443a265 schema:volumeNumber 64
    93 rdf:type schema:PublicationVolume
    94 N23de168a75d94196833051bbb7c714be schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    95 schema:name Phospholipids
    96 rdf:type schema:DefinedTerm
    97 N41081214bada490b979c24e1720aef6d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    98 schema:name Fatty Acids
    99 rdf:type schema:DefinedTerm
    100 N4cbc7983828445c2afc1e4071b96016d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    101 schema:name Soil Pollutants
    102 rdf:type schema:DefinedTerm
    103 N52c09e2688df42bf8ad6d965af58f395 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    104 schema:name Geologic Sediments
    105 rdf:type schema:DefinedTerm
    106 N5de34f64a9cb427880440bb396969765 schema:affiliation N7fe6d8bd96b846009ea8623e4e171ee3
    107 schema:familyName Riesen
    108 schema:givenName Roland
    109 rdf:type schema:Person
    110 N688476b3a6914751b041f8c60497a6f9 schema:name nlm_unique_id
    111 schema:value 7500663
    112 rdf:type schema:PropertyValue
    113 N764db898e656497f9d5e7949c265e619 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    114 schema:name Water Pollutants, Chemical
    115 rdf:type schema:DefinedTerm
    116 N765172a9d9214454b9c94e2587cce1ca rdf:first Nb0149f23cacb4cd998a494f066e01997
    117 rdf:rest Na35a9d64314b48eebcff4a610c863a5c
    118 N78d8466b9c8b4a01b070d0923cf45b09 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    119 schema:name Bacteria
    120 rdf:type schema:DefinedTerm
    121 N7fe6d8bd96b846009ea8623e4e171ee3 schema:name Ecole d’Ingénieurs de Changins, Route de Duillier 50, Case postale 1148, CH-1260 Nyon 1, Switzerland
    122 rdf:type schema:Organization
    123 N8139263521734ee78c0242da631941fd schema:name dimensions_id
    124 schema:value pub.1020472886
    125 rdf:type schema:PropertyValue
    126 N8c7ceea2a47e412d98e9216383cc4fe6 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    127 schema:name Rivers
    128 rdf:type schema:DefinedTerm
    129 N8e4bc255f28140219db64b8f80c96983 rdf:first sg:person.01032551441.99
    130 rdf:rest rdf:nil
    131 N9bf2fb519b6140dba001a997d2d99d66 schema:issueNumber 3
    132 rdf:type schema:PublicationIssue
    133 N9db01a1ac0f8494c8a074339a04dedac schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    134 schema:name Polycyclic Aromatic Hydrocarbons
    135 rdf:type schema:DefinedTerm
    136 Na35a9d64314b48eebcff4a610c863a5c rdf:first N5de34f64a9cb427880440bb396969765
    137 rdf:rest N8e4bc255f28140219db64b8f80c96983
    138 Naccc18ffaed249b9b44ac4d06f52a3c6 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    139 schema:name Ecosystem
    140 rdf:type schema:DefinedTerm
    141 Nae38d691b71e42a58c5d135ea62438c7 schema:name pubmed_id
    142 schema:value 22584297
    143 rdf:type schema:PropertyValue
    144 Nb0149f23cacb4cd998a494f066e01997 schema:affiliation Nf514619f4c7648caa1b1bb52c8a4f5f1
    145 schema:familyName Pratt
    146 schema:givenName Brenda
    147 rdf:type schema:Person
    148 Ndf84a1298d3843a6a3a287ade8c5e7bf schema:name readcube_id
    149 schema:value 618ca300a75ee214343e09b9fb8ee4e78af05507f37eb95fb9356a38171a2360
    150 rdf:type schema:PropertyValue
    151 Nf514619f4c7648caa1b1bb52c8a4f5f1 schema:name URS Corporation, 1375 Euclid Ave Suite 600, 44115, Cleveland, OH, USA
    152 rdf:type schema:Organization
    153 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
    154 schema:name Biological Sciences
    155 rdf:type schema:DefinedTerm
    156 anzsrc-for:0605 schema:inDefinedTermSet anzsrc-for:
    157 schema:name Microbiology
    158 rdf:type schema:DefinedTerm
    159 sg:journal.1081458 schema:issn 0095-3628
    160 1432-184X
    161 schema:name Microbial Ecology
    162 rdf:type schema:Periodical
    163 sg:person.01032551441.99 schema:affiliation https://www.grid.ac/institutes/grid.268467.9
    164 schema:familyName Johnston
    165 schema:givenName Carl G.
    166 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01032551441.99
    167 rdf:type schema:Person
    168 sg:pub.10.1007/bf00335770 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044690468
    169 https://doi.org/10.1007/bf00335770
    170 rdf:type schema:CreativeWork
    171 sg:pub.10.1007/bf00477229 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020315382
    172 https://doi.org/10.1007/bf00477229
    173 rdf:type schema:CreativeWork
    174 sg:pub.10.1007/bf02010449 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025116083
    175 https://doi.org/10.1007/bf02010449
    176 rdf:type schema:CreativeWork
    177 sg:pub.10.1007/s00203-007-0229-6 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048085370
    178 https://doi.org/10.1007/s00203-007-0229-6
    179 rdf:type schema:CreativeWork
    180 sg:pub.10.1007/s00248-001-1040-6 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035049580
    181 https://doi.org/10.1007/s00248-001-1040-6
    182 rdf:type schema:CreativeWork
    183 sg:pub.10.1007/s00248-005-0205-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019956880
    184 https://doi.org/10.1007/s00248-005-0205-0
    185 rdf:type schema:CreativeWork
    186 sg:pub.10.1007/s00248-008-9410-y schema:sameAs https://app.dimensions.ai/details/publication/pub.1010391721
    187 https://doi.org/10.1007/s00248-008-9410-y
    188 rdf:type schema:CreativeWork
    189 sg:pub.10.1007/s00374-003-0642-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036711759
    190 https://doi.org/10.1007/s00374-003-0642-1
    191 rdf:type schema:CreativeWork
    192 sg:pub.10.1007/s11104-006-9142-z schema:sameAs https://app.dimensions.ai/details/publication/pub.1045312592
    193 https://doi.org/10.1007/s11104-006-9142-z
    194 rdf:type schema:CreativeWork
    195 sg:pub.10.1007/s12665-010-0812-z schema:sameAs https://app.dimensions.ai/details/publication/pub.1010972421
    196 https://doi.org/10.1007/s12665-010-0812-z
    197 rdf:type schema:CreativeWork
    198 sg:pub.10.1023/a:1005613406948 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024504497
    199 https://doi.org/10.1023/a:1005613406948
    200 rdf:type schema:CreativeWork
    201 sg:pub.10.1023/b:wate.0000038884.24326.88 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025660973
    202 https://doi.org/10.1023/b:wate.0000038884.24326.88
    203 rdf:type schema:CreativeWork
    204 https://app.dimensions.ai/details/publication/pub.1077159414 schema:CreativeWork
    205 https://app.dimensions.ai/details/publication/pub.1077202056 schema:CreativeWork
    206 https://app.dimensions.ai/details/publication/pub.1083312580 schema:CreativeWork
    207 https://doi.org/10.1016/0167-7012(96)00929-3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022306524
    208 rdf:type schema:CreativeWork
    209 https://doi.org/10.1016/j.apgeochem.2007.10.012 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050274353
    210 rdf:type schema:CreativeWork
    211 https://doi.org/10.1016/j.apsoil.2006.09.014 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005173442
    212 rdf:type schema:CreativeWork
    213 https://doi.org/10.1016/j.apsoil.2008.03.006 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002697425
    214 rdf:type schema:CreativeWork
    215 https://doi.org/10.1016/j.apsoil.2008.07.005 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050533298
    216 rdf:type schema:CreativeWork
    217 https://doi.org/10.1016/j.envpol.2007.08.009 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041268375
    218 rdf:type schema:CreativeWork
    219 https://doi.org/10.1016/j.foodchem.2007.10.032 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026226923
    220 rdf:type schema:CreativeWork
    221 https://doi.org/10.1016/j.foodchem.2009.02.073 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024068863
    222 rdf:type schema:CreativeWork
    223 https://doi.org/10.1016/j.geoderma.2009.02.003 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035163529
    224 rdf:type schema:CreativeWork
    225 https://doi.org/10.1016/j.orggeochem.2006.01.009 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028490935
    226 rdf:type schema:CreativeWork
    227 https://doi.org/10.1016/j.seares.2009.10.002 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016438546
    228 rdf:type schema:CreativeWork
    229 https://doi.org/10.1016/j.soilbio.2004.05.002 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053200461
    230 rdf:type schema:CreativeWork
    231 https://doi.org/10.1016/j.soilbio.2006.12.023 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018422752
    232 rdf:type schema:CreativeWork
    233 https://doi.org/10.1016/j.soilbio.2007.07.017 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009410069
    234 rdf:type schema:CreativeWork
    235 https://doi.org/10.1016/j.soilbio.2010.07.020 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014188780
    236 rdf:type schema:CreativeWork
    237 https://doi.org/10.1016/j.soilbio.2010.10.010 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004449485
    238 rdf:type schema:CreativeWork
    239 https://doi.org/10.1016/j.soilbio.2010.11.021 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009358092
    240 rdf:type schema:CreativeWork
    241 https://doi.org/10.1016/j.watres.2005.10.019 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039536746
    242 rdf:type schema:CreativeWork
    243 https://doi.org/10.1016/s0038-0717(00)00060-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024407904
    244 rdf:type schema:CreativeWork
    245 https://doi.org/10.1016/s0146-6380(98)00174-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030012236
    246 rdf:type schema:CreativeWork
    247 https://doi.org/10.1016/s0146-6380(99)00077-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053630389
    248 rdf:type schema:CreativeWork
    249 https://doi.org/10.1016/s0167-7012(02)00251-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047735375
    250 rdf:type schema:CreativeWork
    251 https://doi.org/10.1016/s0167-7012(99)00069-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1004387484
    252 rdf:type schema:CreativeWork
    253 https://doi.org/10.1016/s0929-1393(02)00025-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051518426
    254 rdf:type schema:CreativeWork
    255 https://doi.org/10.1016/s0964-8305(00)00100-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045975849
    256 rdf:type schema:CreativeWork
    257 https://doi.org/10.1021/es803348g schema:sameAs https://app.dimensions.ai/details/publication/pub.1055515864
    258 rdf:type schema:CreativeWork
    259 https://doi.org/10.1046/j.1365-2672.2000.01058.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1001500436
    260 rdf:type schema:CreativeWork
    261 https://doi.org/10.1111/j.1574-6941.2002.tb00940.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1009182340
    262 rdf:type schema:CreativeWork
    263 https://doi.org/10.1111/j.1574-6941.2002.tb01000.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1012935100
    264 rdf:type schema:CreativeWork
    265 https://doi.org/10.1128/aem.67.4.1542-1550.2001 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005443880
    266 rdf:type schema:CreativeWork
    267 https://doi.org/10.1139/w05-144 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026869921
    268 rdf:type schema:CreativeWork
    269 https://doi.org/10.2307/1310976 schema:sameAs https://app.dimensions.ai/details/publication/pub.1069433280
    270 rdf:type schema:CreativeWork
    271 https://doi.org/10.2307/3544109 schema:sameAs https://app.dimensions.ai/details/publication/pub.1070366227
    272 rdf:type schema:CreativeWork
    273 https://doi.org/10.3354/meps062121 schema:sameAs https://app.dimensions.ai/details/publication/pub.1071166336
    274 rdf:type schema:CreativeWork
    275 https://www.grid.ac/institutes/grid.268467.9 schema:alternateName Youngstown State University
    276 schema:name Department of Biological Sciences, Youngstown State University, 44555, Youngstown, OH, USA
    277 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...