Bacterial community analysis on Sclerotium-suppressive soil View Full Text


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Article Info

DATE

2021-06-21

AUTHORS

R. Thilagavathi, S. Nakkeeran, D. Balachandar, T. Raguchander, R. Samiyappan

ABSTRACT

Difficulties in controlling the soil-borne plant pathogenic fungus Sclerotium rolfsii favoured the analysis of its suppressive soil for better understanding. In the present study, culture-independent molecular technique was used to analyse the bacterial communities of suppressive soil and conducive soil. Hence, metagenomic DNAs from both kinds of soils were directly extracted and their sequence polymorphism was analysed by targeting hypervariable domains, V4 + V5, of the 16S rRNA gene. The results of 16S rRNA gene-driven bacterial community diversity analysis along with soil physicochemical and biological properties clearly discriminated S. rolfsii suppressive soil from conducive soil. The dominant phylogenetic group of suppressive soil is Actinobacteria followed by Proteobacteria. The other groups include Acidobacteria, Firmicutes and Cyanobacteria. In contrast, conducive soil had very few Actinobacterial sequences and was dominated by Gamma- and Betaproteobacteria. Based on the relative proportion of different bacterial communities, their diversity and species richness were observed more in suppressive soil than in conducive soil. The present study identifies the dominant bacterial community which shares S. rolfsii suppressiveness. More... »

PAGES

4539-4548

References to SciGraph publications

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  • 2009-04-16. Phenazine antibiotics produced by fluorescent pseudomonads contribute to natural soil suppressiveness to Fusarium wilt in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2002. Antibiotic production by bacterial biocontrol agents in ANTONIE VAN LEEUWENHOEK
  • 2007-05-06. Evidences of biological control capacities of Streptomyces spp. against Sclerotium rolfsii responsible for damping-off disease in sugar beet (Beta vulgaris L.) in WORLD JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY
  • 2007-01-01. Biocontrol of Plant Diseases by Associative and Endophytic Nitrogen-Fixing Bacteria in ASSOCIATIVE AND ENDOPHYTIC NITROGEN-FIXING BACTERIA AND CYANOBACTERIAL ASSOCIATIONS
  • 2002-12. Mechanisms of natural soil suppressiveness to soilborne diseases in ANTONIE VAN LEEUWENHOEK
  • 1964-02. Ammonium Production in Soil under Waterlogged Conditions as an Index of Nitrogen Availability in NATURE
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s00203-021-02426-z

    DOI

    http://dx.doi.org/10.1007/s00203-021-02426-z

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1139025506

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/34152425


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