Aerobic and anaerobic metabolism of squalene by a denitrifying bacterium isolated from marine sediment View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2002-10

AUTHORS

Jean-François Rontani, Abdelkrim Mouzdahir, Valérie Michotey, Patricia Bonin

ABSTRACT

The aerobic and anaerobic metabolism of the isoprenoid alkene squalene was investigated in a new type of marine denitrifying bacterium, strain 2sq31, isolated from marine sediment. Strain 2sq31 was identified as a species of Marinobacter. Under denitrifying conditions, the strain efficiently degraded squalene; of 0.7 mmol added per liter of medium, 77% was degraded within 120 days under anoxic conditions with nitrate as electron acceptor. Tertiary diols and methyl ketones were identified as metabolites, and an anaerobic pathway was suggested to explain the formation of such compounds. The first step in anaerobic degradation of squalene by strain 2sq31 involves hydration of double bonds to tertiary alcohols. Under oxic conditions, the degradation of squalene by strain 2sq31 was rapid and involved oxidative splitting of the C-10/C-11 or C-14/C-15 double bonds, in addition to the pathways observed under denitrifying conditions. More... »

PAGES

279-287

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s00203-002-0457-8

DOI

http://dx.doi.org/10.1007/s00203-002-0457-8

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1008105693

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/12209261


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0907", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Environmental Engineering", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/09", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Engineering", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Aerobiosis", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Anaerobiosis", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Biodegradation, Environmental", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA, Ribosomal", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Gammaproteobacteria", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Gas Chromatography-Mass Spectrometry", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Geologic Sediments", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Molecular Sequence Data", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Nitrates", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Phylogeny", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "RNA, Ribosomal, 16S", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Seawater", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Sequence Analysis, DNA", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Squalene", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "name": [
            "Laboratoire d'Oc\u00e9anographie et de Biog\u00e9ochimie (UMR 6535), Centre d'Oc\u00e9anologie de Marseille \u2013 OSU, Campus de Luminy \u2013 case 901, 13288 Marseille, France"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Rontani", 
        "givenName": "Jean-Fran\u00e7ois", 
        "id": "sg:person.01260160240.48", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01260160240.48"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Laboratoire d'Oc\u00e9anographie et de Biog\u00e9ochimie (UMR 6535), Centre d'Oc\u00e9anologie de Marseille \u2013 OSU, Campus de Luminy \u2013 case 901, 13288 Marseille, France"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Mouzdahir", 
        "givenName": "Abdelkrim", 
        "id": "sg:person.01353763047.15", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01353763047.15"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Laboratoire d'Oc\u00e9anographie et de Biog\u00e9ochimie (UMR 6535), Centre d'Oc\u00e9anologie de Marseille \u2013 OSU, Campus de Luminy \u2013 case 901, 13288 Marseille, France"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Michotey", 
        "givenName": "Val\u00e9rie", 
        "id": "sg:person.0740413275.38", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0740413275.38"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Laboratoire d'Oc\u00e9anographie et de Biog\u00e9ochimie (UMR 6535), Centre d'Oc\u00e9anologie de Marseille \u2013 OSU, Campus de Luminy \u2013 case 901, 13288 Marseille, France"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Bonin", 
        "givenName": "Patricia", 
        "id": "sg:person.01054641675.34", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01054641675.34"
        ], 
        "type": "Person"
      }
    ], 
    "datePublished": "2002-10", 
    "datePublishedReg": "2002-10-01", 
    "description": "The aerobic and anaerobic metabolism of the isoprenoid alkene squalene was investigated in a new type of marine denitrifying bacterium, strain 2sq31, isolated from marine sediment. Strain 2sq31 was identified as a species of Marinobacter. Under denitrifying conditions, the strain efficiently degraded squalene; of 0.7 mmol added per liter of medium, 77% was degraded within 120 days under anoxic conditions with nitrate as electron acceptor. Tertiary diols and methyl ketones were identified as metabolites, and an anaerobic pathway was suggested to explain the formation of such compounds. The first step in anaerobic degradation of squalene by strain 2sq31 involves hydration of double bonds to tertiary alcohols. Under oxic conditions, the degradation of squalene by strain 2sq31 was rapid and involved oxidative splitting of the C-10/C-11 or C-14/C-15 double bonds, in addition to the pathways observed under denitrifying conditions.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1007/s00203-002-0457-8", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1018945", 
        "issn": [
          "0302-8933", 
          "1432-072X"
        ], 
        "name": "Archives of Microbiology", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "4", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "178"
      }
    ], 
    "name": "Aerobic and anaerobic metabolism of squalene by a denitrifying bacterium isolated from marine sediment", 
    "pagination": "279-287", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "269db51fd6da37667458dd65780d9e299f67e5d9b002b6e94ac85e27cef58df8"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "12209261"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "0410427"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/s00203-002-0457-8"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1008105693"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/s00203-002-0457-8", 
      "https://app.dimensions.ai/details/publication/pub.1008105693"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T19:51", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8681_00000486.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://link.springer.com/10.1007/s00203-002-0457-8"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00203-002-0457-8'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00203-002-0457-8'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00203-002-0457-8'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00203-002-0457-8'


 

This table displays all metadata directly associated to this object as RDF triples.

151 TRIPLES      20 PREDICATES      43 URIs      35 LITERALS      23 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/s00203-002-0457-8 schema:about N1bd04a7687fd44bf96d6e52693734d3b
2 N23fae86c924844f8b2d7eb93b6b8fa59
3 N3d5a936185ec468dace8d2047b364cd6
4 N438309bbe48c4f9ca58a9831780d4533
5 N70091916d7084c98bf7edeb55a4011f4
6 N7594e535a77840e9b11061ca08c0dab1
7 N7e8468aa8ed34528aa411d0e23532751
8 N8076597f266b4f208209a56484522a7d
9 N81f0968e034f4ca6b0d2fe1212b9c47e
10 N850227f111a143328e322497ea3ef2d9
11 N8e8af457bb3848d385bf30ded87eac0b
12 Na08231b748ca45e381b946350d7a8a61
13 Na30fdaf10d8e4b6bb0dc57e30522e94b
14 Nd2452b7bcd1945b98ef1c68d915a94ab
15 anzsrc-for:09
16 anzsrc-for:0907
17 schema:author N982fba7e41d94dad8f73800b63670ab4
18 schema:datePublished 2002-10
19 schema:datePublishedReg 2002-10-01
20 schema:description The aerobic and anaerobic metabolism of the isoprenoid alkene squalene was investigated in a new type of marine denitrifying bacterium, strain 2sq31, isolated from marine sediment. Strain 2sq31 was identified as a species of Marinobacter. Under denitrifying conditions, the strain efficiently degraded squalene; of 0.7 mmol added per liter of medium, 77% was degraded within 120 days under anoxic conditions with nitrate as electron acceptor. Tertiary diols and methyl ketones were identified as metabolites, and an anaerobic pathway was suggested to explain the formation of such compounds. The first step in anaerobic degradation of squalene by strain 2sq31 involves hydration of double bonds to tertiary alcohols. Under oxic conditions, the degradation of squalene by strain 2sq31 was rapid and involved oxidative splitting of the C-10/C-11 or C-14/C-15 double bonds, in addition to the pathways observed under denitrifying conditions.
21 schema:genre research_article
22 schema:inLanguage en
23 schema:isAccessibleForFree false
24 schema:isPartOf N7e77330d2c7b4bdcbac1cfd431ba5d1c
25 N94c1ff844e224a7a818a5794e00b4e51
26 sg:journal.1018945
27 schema:name Aerobic and anaerobic metabolism of squalene by a denitrifying bacterium isolated from marine sediment
28 schema:pagination 279-287
29 schema:productId N484480d41b6f4359b7a032ed3414e669
30 N7a42a720c3bc469395475aba95e935c3
31 N91ffe6cee98f48b49d4154163e3257f3
32 Na1cc4966bfde4a1ab5f0d094d24d2edf
33 Nedd44dc56ab9472eb96dbdcf8bc18d4d
34 schema:sameAs https://app.dimensions.ai/details/publication/pub.1008105693
35 https://doi.org/10.1007/s00203-002-0457-8
36 schema:sdDatePublished 2019-04-10T19:51
37 schema:sdLicense https://scigraph.springernature.com/explorer/license/
38 schema:sdPublisher Nfed599d8f32e4295b47f33a4c048fe2b
39 schema:url http://link.springer.com/10.1007/s00203-002-0457-8
40 sgo:license sg:explorer/license/
41 sgo:sdDataset articles
42 rdf:type schema:ScholarlyArticle
43 N1bd04a7687fd44bf96d6e52693734d3b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
44 schema:name Gammaproteobacteria
45 rdf:type schema:DefinedTerm
46 N23fae86c924844f8b2d7eb93b6b8fa59 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
47 schema:name Nitrates
48 rdf:type schema:DefinedTerm
49 N25ae12134bd442abaf649365769fc493 rdf:first sg:person.0740413275.38
50 rdf:rest Naf5e35419fec43bb877ddd80dbfd00d3
51 N2bb89535d27d43ccad9facdbc012f040 schema:name Laboratoire d'Océanographie et de Biogéochimie (UMR 6535), Centre d'Océanologie de Marseille – OSU, Campus de Luminy – case 901, 13288 Marseille, France
52 rdf:type schema:Organization
53 N39f19d11f4bb4800961b6aff961e7a76 schema:name Laboratoire d'Océanographie et de Biogéochimie (UMR 6535), Centre d'Océanologie de Marseille – OSU, Campus de Luminy – case 901, 13288 Marseille, France
54 rdf:type schema:Organization
55 N3d5a936185ec468dace8d2047b364cd6 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
56 schema:name Anaerobiosis
57 rdf:type schema:DefinedTerm
58 N438309bbe48c4f9ca58a9831780d4533 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
59 schema:name Seawater
60 rdf:type schema:DefinedTerm
61 N484480d41b6f4359b7a032ed3414e669 schema:name pubmed_id
62 schema:value 12209261
63 rdf:type schema:PropertyValue
64 N56665fb03a7f45299a7c7268ac8b9526 schema:name Laboratoire d'Océanographie et de Biogéochimie (UMR 6535), Centre d'Océanologie de Marseille – OSU, Campus de Luminy – case 901, 13288 Marseille, France
65 rdf:type schema:Organization
66 N70091916d7084c98bf7edeb55a4011f4 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
67 schema:name Squalene
68 rdf:type schema:DefinedTerm
69 N73824cfb2605489dbf63f8e68dcc956c rdf:first sg:person.01353763047.15
70 rdf:rest N25ae12134bd442abaf649365769fc493
71 N7594e535a77840e9b11061ca08c0dab1 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
72 schema:name Aerobiosis
73 rdf:type schema:DefinedTerm
74 N7a42a720c3bc469395475aba95e935c3 schema:name dimensions_id
75 schema:value pub.1008105693
76 rdf:type schema:PropertyValue
77 N7e77330d2c7b4bdcbac1cfd431ba5d1c schema:issueNumber 4
78 rdf:type schema:PublicationIssue
79 N7e8468aa8ed34528aa411d0e23532751 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
80 schema:name Biodegradation, Environmental
81 rdf:type schema:DefinedTerm
82 N8076597f266b4f208209a56484522a7d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
83 schema:name Gas Chromatography-Mass Spectrometry
84 rdf:type schema:DefinedTerm
85 N81f0968e034f4ca6b0d2fe1212b9c47e schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
86 schema:name Phylogeny
87 rdf:type schema:DefinedTerm
88 N850227f111a143328e322497ea3ef2d9 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
89 schema:name Geologic Sediments
90 rdf:type schema:DefinedTerm
91 N8e8af457bb3848d385bf30ded87eac0b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
92 schema:name Molecular Sequence Data
93 rdf:type schema:DefinedTerm
94 N91ffe6cee98f48b49d4154163e3257f3 schema:name nlm_unique_id
95 schema:value 0410427
96 rdf:type schema:PropertyValue
97 N94c1ff844e224a7a818a5794e00b4e51 schema:volumeNumber 178
98 rdf:type schema:PublicationVolume
99 N982fba7e41d94dad8f73800b63670ab4 rdf:first sg:person.01260160240.48
100 rdf:rest N73824cfb2605489dbf63f8e68dcc956c
101 Na08231b748ca45e381b946350d7a8a61 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
102 schema:name RNA, Ribosomal, 16S
103 rdf:type schema:DefinedTerm
104 Na1cc4966bfde4a1ab5f0d094d24d2edf schema:name readcube_id
105 schema:value 269db51fd6da37667458dd65780d9e299f67e5d9b002b6e94ac85e27cef58df8
106 rdf:type schema:PropertyValue
107 Na30fdaf10d8e4b6bb0dc57e30522e94b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
108 schema:name DNA, Ribosomal
109 rdf:type schema:DefinedTerm
110 Naf5e35419fec43bb877ddd80dbfd00d3 rdf:first sg:person.01054641675.34
111 rdf:rest rdf:nil
112 Ncf339ace20304b96bf1526b65b0c5df0 schema:name Laboratoire d'Océanographie et de Biogéochimie (UMR 6535), Centre d'Océanologie de Marseille – OSU, Campus de Luminy – case 901, 13288 Marseille, France
113 rdf:type schema:Organization
114 Nd2452b7bcd1945b98ef1c68d915a94ab schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
115 schema:name Sequence Analysis, DNA
116 rdf:type schema:DefinedTerm
117 Nedd44dc56ab9472eb96dbdcf8bc18d4d schema:name doi
118 schema:value 10.1007/s00203-002-0457-8
119 rdf:type schema:PropertyValue
120 Nfed599d8f32e4295b47f33a4c048fe2b schema:name Springer Nature - SN SciGraph project
121 rdf:type schema:Organization
122 anzsrc-for:09 schema:inDefinedTermSet anzsrc-for:
123 schema:name Engineering
124 rdf:type schema:DefinedTerm
125 anzsrc-for:0907 schema:inDefinedTermSet anzsrc-for:
126 schema:name Environmental Engineering
127 rdf:type schema:DefinedTerm
128 sg:journal.1018945 schema:issn 0302-8933
129 1432-072X
130 schema:name Archives of Microbiology
131 rdf:type schema:Periodical
132 sg:person.01054641675.34 schema:affiliation N2bb89535d27d43ccad9facdbc012f040
133 schema:familyName Bonin
134 schema:givenName Patricia
135 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01054641675.34
136 rdf:type schema:Person
137 sg:person.01260160240.48 schema:affiliation Ncf339ace20304b96bf1526b65b0c5df0
138 schema:familyName Rontani
139 schema:givenName Jean-François
140 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01260160240.48
141 rdf:type schema:Person
142 sg:person.01353763047.15 schema:affiliation N39f19d11f4bb4800961b6aff961e7a76
143 schema:familyName Mouzdahir
144 schema:givenName Abdelkrim
145 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01353763047.15
146 rdf:type schema:Person
147 sg:person.0740413275.38 schema:affiliation N56665fb03a7f45299a7c7268ac8b9526
148 schema:familyName Michotey
149 schema:givenName Valérie
150 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0740413275.38
151 rdf:type schema:Person
 




Preview window. Press ESC to close (or click here)


...