A family of LRR sequences in the vicinity of the Co-2 locus for anthracnose resistance in Phaseolus vulgaris and its ... View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

1998-03

AUTHORS

V. Geffroy, F. Creusot, J. Falquet, M. Sévignac, A.-F. Adam-Blondon, H. Bannerot, P. Gepts, M. Dron

ABSTRACT

Molecular markers offer new opportunities for breeding for disease resistance. Resistance gene pyramiding in a single cultivar, as a strategy for durable resistance, can be facilitated by marker-assisted selection (MAS). A RAPD marker, ROH20(450), linked to the Mesoamerican Co-2 anthracnose resistance gene, was previously transformed into a SCAR marker, SCH20. In the present paper we have further characterized the relevance of the SCH20 SCAR marker in different genetic backgrounds. Since this SCAR marker was found to be useful mainly in the Andean gene pool, we identified a new PCR-based marker (SCAreoli) for indirect scoring of the presence of the Co-2 gene. The SCAreoli SCAR marker is polymorphic in the Mesoamerican as well as in the Andean gene pool and should be useful in MAS. We also report that PvH20, the cloned sequence corresponding to the 450-bp RAPD marker ROH20(450), contains six imperfect leucine-rich repeats, and reveals a family of related sequences in the vicinity of the Co-2 locus. These results are discussed in the context of the recent cloning of some plant resistance genes. More... »

PAGES

494-502

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s001220050766

DOI

http://dx.doi.org/10.1007/s001220050766

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1033046077

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/24710889


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "name": [
            "LPPM, IBP, B\u00e2t, 630, Universit\u00e9 Paris Sud, 91405 ORSAY Cedex, France E-mail: geffroy@lovelace.infobiogen.fr, FR"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Geffroy", 
        "givenName": "V.", 
        "id": "sg:person.01104653617.41", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01104653617.41"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "LPPM, IBP, B\u00e2t, 630, Universit\u00e9 Paris Sud, 91405 ORSAY Cedex, France E-mail: geffroy@lovelace.infobiogen.fr, FR"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Creusot", 
        "givenName": "F.", 
        "id": "sg:person.01152413250.43", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01152413250.43"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "LPPM, IBP, B\u00e2t, 630, Universit\u00e9 Paris Sud, 91405 ORSAY Cedex, France E-mail: geffroy@lovelace.infobiogen.fr, FR"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Falquet", 
        "givenName": "J.", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "LPPM, IBP, B\u00e2t, 630, Universit\u00e9 Paris Sud, 91405 ORSAY Cedex, France E-mail: geffroy@lovelace.infobiogen.fr, FR"
          ], 
          "type": "Organization"
        }, 
        "familyName": "S\u00e9vignac", 
        "givenName": "M.", 
        "id": "sg:person.010544040764.84", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010544040764.84"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "LPPM, IBP, B\u00e2t, 630, Universit\u00e9 Paris Sud, 91405 ORSAY Cedex, France E-mail: geffroy@lovelace.infobiogen.fr, FR"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Adam-Blondon", 
        "givenName": "A.-F.", 
        "id": "sg:person.01035516467.42", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01035516467.42"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Centre de Versailles Grignon", 
          "id": "https://www.grid.ac/institutes/grid.418070.a", 
          "name": [
            "Station d\u2019Am\u00e9lioration des Plantes, INRA, Route de Saint-Cyr, 78 026 Versailles, France, FR"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Bannerot", 
        "givenName": "H.", 
        "id": "sg:person.0605446774.83", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0605446774.83"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of California, Davis", 
          "id": "https://www.grid.ac/institutes/grid.27860.3b", 
          "name": [
            "Department of Agronomy and Range Science, University of California, Davis, CA 95616-8515, USA, US"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Gepts", 
        "givenName": "P.", 
        "id": "sg:person.01361620215.40", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01361620215.40"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "LPPM, IBP, B\u00e2t, 630, Universit\u00e9 Paris Sud, 91405 ORSAY Cedex, France E-mail: geffroy@lovelace.infobiogen.fr, FR"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Dron", 
        "givenName": "M.", 
        "id": "sg:person.01245617010.38", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01245617010.38"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1007/bf01253998", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1004569794", 
          "https://doi.org/10.1007/bf01253998"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf01253998", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1004569794", 
          "https://doi.org/10.1007/bf01253998"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "1998-03", 
    "datePublishedReg": "1998-03-01", 
    "description": "Molecular markers offer new opportunities for breeding for disease resistance. Resistance gene pyramiding in a single cultivar, as a strategy for durable resistance, can be facilitated by marker-assisted selection (MAS). A RAPD marker, ROH20(450), linked to the Mesoamerican Co-2 anthracnose resistance gene, was previously transformed into a SCAR marker, SCH20. In the present paper we have further characterized the relevance of the SCH20 SCAR marker in different genetic backgrounds. Since this SCAR marker was found to be useful mainly in the Andean gene pool, we identified a new PCR-based marker (SCAreoli) for indirect scoring of the presence of the Co-2 gene. The SCAreoli SCAR marker is polymorphic in the Mesoamerican as well as in the Andean gene pool and should be useful in MAS. We also report that PvH20, the cloned sequence corresponding to the 450-bp RAPD marker ROH20(450), contains six imperfect leucine-rich repeats, and reveals a family of related sequences in the vicinity of the Co-2 locus. These results are discussed in the context of the recent cloning of some plant resistance genes. ", 
    "genre": "research_article", 
    "id": "sg:pub.10.1007/s001220050766", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1135804", 
        "issn": [
          "0040-5752", 
          "1432-2242"
        ], 
        "name": "Theoretical and Applied Genetics", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "3-4", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "96"
      }
    ], 
    "name": "A family of LRR sequences in the vicinity of the Co-2 locus for anthracnose resistance in Phaseolus vulgaris and its potential use in marker-assisted selection", 
    "pagination": "494-502", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "9d6d2d7c6d015fc4e7e4f697b552231a2d3d1e8968a2acb582f4298b65e94aa8"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "24710889"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "0145600"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/s001220050766"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1033046077"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/s001220050766", 
      "https://app.dimensions.ai/details/publication/pub.1033046077"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T13:14", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8659_00000506.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://link.springer.com/10.1007%2Fs001220050766"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s001220050766'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s001220050766'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s001220050766'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s001220050766'


 

This table displays all metadata directly associated to this object as RDF triples.

136 TRIPLES      21 PREDICATES      30 URIs      21 LITERALS      9 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/s001220050766 schema:about anzsrc-for:06
2 anzsrc-for:0604
3 schema:author Nc9a925b32f6343b0a2ec312dd1e29355
4 schema:citation sg:pub.10.1007/bf01253998
5 schema:datePublished 1998-03
6 schema:datePublishedReg 1998-03-01
7 schema:description Molecular markers offer new opportunities for breeding for disease resistance. Resistance gene pyramiding in a single cultivar, as a strategy for durable resistance, can be facilitated by marker-assisted selection (MAS). A RAPD marker, ROH20(450), linked to the Mesoamerican Co-2 anthracnose resistance gene, was previously transformed into a SCAR marker, SCH20. In the present paper we have further characterized the relevance of the SCH20 SCAR marker in different genetic backgrounds. Since this SCAR marker was found to be useful mainly in the Andean gene pool, we identified a new PCR-based marker (SCAreoli) for indirect scoring of the presence of the Co-2 gene. The SCAreoli SCAR marker is polymorphic in the Mesoamerican as well as in the Andean gene pool and should be useful in MAS. We also report that PvH20, the cloned sequence corresponding to the 450-bp RAPD marker ROH20(450), contains six imperfect leucine-rich repeats, and reveals a family of related sequences in the vicinity of the Co-2 locus. These results are discussed in the context of the recent cloning of some plant resistance genes.
8 schema:genre research_article
9 schema:inLanguage en
10 schema:isAccessibleForFree false
11 schema:isPartOf N7ddde5d63ca8403ea76f66de09961898
12 N83a5d44e24784bd5b58d9cfa6a39c8bc
13 sg:journal.1135804
14 schema:name A family of LRR sequences in the vicinity of the Co-2 locus for anthracnose resistance in Phaseolus vulgaris and its potential use in marker-assisted selection
15 schema:pagination 494-502
16 schema:productId N282d2aa2354d4356b4074733bc66c441
17 Nc51438d4a3d64ab3b743e054bf7842e8
18 Nca586bc18f9b446abf0ce035e4b1ea21
19 Nd8772fae27e8453d8c5960dba94a7d1a
20 Nda787070ae7a4997be473280c32048bd
21 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033046077
22 https://doi.org/10.1007/s001220050766
23 schema:sdDatePublished 2019-04-10T13:14
24 schema:sdLicense https://scigraph.springernature.com/explorer/license/
25 schema:sdPublisher N62fb28d8cf994aac9e4e5660bf48f16d
26 schema:url http://link.springer.com/10.1007%2Fs001220050766
27 sgo:license sg:explorer/license/
28 sgo:sdDataset articles
29 rdf:type schema:ScholarlyArticle
30 N275f7ae212fb4d508e95cffa35558de1 schema:name LPPM, IBP, Bât, 630, Université Paris Sud, 91405 ORSAY Cedex, France E-mail: geffroy@lovelace.infobiogen.fr, FR
31 rdf:type schema:Organization
32 N282d2aa2354d4356b4074733bc66c441 schema:name nlm_unique_id
33 schema:value 0145600
34 rdf:type schema:PropertyValue
35 N45860b63dd8d44e9ba74e52cfdac263b schema:name LPPM, IBP, Bât, 630, Université Paris Sud, 91405 ORSAY Cedex, France E-mail: geffroy@lovelace.infobiogen.fr, FR
36 rdf:type schema:Organization
37 N610a2da3ed3a4cb993c8e28df14bb58d schema:name LPPM, IBP, Bât, 630, Université Paris Sud, 91405 ORSAY Cedex, France E-mail: geffroy@lovelace.infobiogen.fr, FR
38 rdf:type schema:Organization
39 N62fb28d8cf994aac9e4e5660bf48f16d schema:name Springer Nature - SN SciGraph project
40 rdf:type schema:Organization
41 N66d0ec06dd664c65b534ac873b8e4103 rdf:first sg:person.01152413250.43
42 rdf:rest N7c8a7142d0624972a4bf7734d3964856
43 N6f04ffc98ebf4b8e8869726b4b84cdb6 rdf:first sg:person.010544040764.84
44 rdf:rest N8ce3560bc8cf40f38ca5a42731e9ed1e
45 N7c8a7142d0624972a4bf7734d3964856 rdf:first Na51db0290ffb42fc805eb92f59547555
46 rdf:rest N6f04ffc98ebf4b8e8869726b4b84cdb6
47 N7ddde5d63ca8403ea76f66de09961898 schema:volumeNumber 96
48 rdf:type schema:PublicationVolume
49 N83a5d44e24784bd5b58d9cfa6a39c8bc schema:issueNumber 3-4
50 rdf:type schema:PublicationIssue
51 N8ce3560bc8cf40f38ca5a42731e9ed1e rdf:first sg:person.01035516467.42
52 rdf:rest N8d7752314f2c486185cd753c0c12ad09
53 N8d7752314f2c486185cd753c0c12ad09 rdf:first sg:person.0605446774.83
54 rdf:rest Nf89ddc8ec17f4cd391f160745806319c
55 Na0abca20b932420f8b13c5d2cc763e43 schema:name LPPM, IBP, Bât, 630, Université Paris Sud, 91405 ORSAY Cedex, France E-mail: geffroy@lovelace.infobiogen.fr, FR
56 rdf:type schema:Organization
57 Na51db0290ffb42fc805eb92f59547555 schema:affiliation N610a2da3ed3a4cb993c8e28df14bb58d
58 schema:familyName Falquet
59 schema:givenName J.
60 rdf:type schema:Person
61 Nbff42dce74d7444782b31f456e2ca5ce rdf:first sg:person.01245617010.38
62 rdf:rest rdf:nil
63 Nc51438d4a3d64ab3b743e054bf7842e8 schema:name pubmed_id
64 schema:value 24710889
65 rdf:type schema:PropertyValue
66 Nc9a925b32f6343b0a2ec312dd1e29355 rdf:first sg:person.01104653617.41
67 rdf:rest N66d0ec06dd664c65b534ac873b8e4103
68 Nca586bc18f9b446abf0ce035e4b1ea21 schema:name readcube_id
69 schema:value 9d6d2d7c6d015fc4e7e4f697b552231a2d3d1e8968a2acb582f4298b65e94aa8
70 rdf:type schema:PropertyValue
71 Ncf0864779b0047669282dfde8c0463d9 schema:name LPPM, IBP, Bât, 630, Université Paris Sud, 91405 ORSAY Cedex, France E-mail: geffroy@lovelace.infobiogen.fr, FR
72 rdf:type schema:Organization
73 Nd8772fae27e8453d8c5960dba94a7d1a schema:name dimensions_id
74 schema:value pub.1033046077
75 rdf:type schema:PropertyValue
76 Nda787070ae7a4997be473280c32048bd schema:name doi
77 schema:value 10.1007/s001220050766
78 rdf:type schema:PropertyValue
79 Nef2eedfac035442482577b63ac5697da schema:name LPPM, IBP, Bât, 630, Université Paris Sud, 91405 ORSAY Cedex, France E-mail: geffroy@lovelace.infobiogen.fr, FR
80 rdf:type schema:Organization
81 Nf89ddc8ec17f4cd391f160745806319c rdf:first sg:person.01361620215.40
82 rdf:rest Nbff42dce74d7444782b31f456e2ca5ce
83 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
84 schema:name Biological Sciences
85 rdf:type schema:DefinedTerm
86 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
87 schema:name Genetics
88 rdf:type schema:DefinedTerm
89 sg:journal.1135804 schema:issn 0040-5752
90 1432-2242
91 schema:name Theoretical and Applied Genetics
92 rdf:type schema:Periodical
93 sg:person.01035516467.42 schema:affiliation N45860b63dd8d44e9ba74e52cfdac263b
94 schema:familyName Adam-Blondon
95 schema:givenName A.-F.
96 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01035516467.42
97 rdf:type schema:Person
98 sg:person.010544040764.84 schema:affiliation N275f7ae212fb4d508e95cffa35558de1
99 schema:familyName Sévignac
100 schema:givenName M.
101 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010544040764.84
102 rdf:type schema:Person
103 sg:person.01104653617.41 schema:affiliation Ncf0864779b0047669282dfde8c0463d9
104 schema:familyName Geffroy
105 schema:givenName V.
106 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01104653617.41
107 rdf:type schema:Person
108 sg:person.01152413250.43 schema:affiliation Nef2eedfac035442482577b63ac5697da
109 schema:familyName Creusot
110 schema:givenName F.
111 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01152413250.43
112 rdf:type schema:Person
113 sg:person.01245617010.38 schema:affiliation Na0abca20b932420f8b13c5d2cc763e43
114 schema:familyName Dron
115 schema:givenName M.
116 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01245617010.38
117 rdf:type schema:Person
118 sg:person.01361620215.40 schema:affiliation https://www.grid.ac/institutes/grid.27860.3b
119 schema:familyName Gepts
120 schema:givenName P.
121 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01361620215.40
122 rdf:type schema:Person
123 sg:person.0605446774.83 schema:affiliation https://www.grid.ac/institutes/grid.418070.a
124 schema:familyName Bannerot
125 schema:givenName H.
126 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0605446774.83
127 rdf:type schema:Person
128 sg:pub.10.1007/bf01253998 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004569794
129 https://doi.org/10.1007/bf01253998
130 rdf:type schema:CreativeWork
131 https://www.grid.ac/institutes/grid.27860.3b schema:alternateName University of California, Davis
132 schema:name Department of Agronomy and Range Science, University of California, Davis, CA 95616-8515, USA, US
133 rdf:type schema:Organization
134 https://www.grid.ac/institutes/grid.418070.a schema:alternateName Centre de Versailles Grignon
135 schema:name Station d’Amélioration des Plantes, INRA, Route de Saint-Cyr, 78 026 Versailles, France, FR
136 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...