Development of highly polymorphic SNP markers from the complexity reduced portion of maize [Zea mays L.] genome for use in ... View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2010-04-18

AUTHORS

Jafar A. Mammadov, Wei Chen, Ruihua Ren, Reetal Pai, Wesley Marchione, Feyruz Yalçin, Hanneke Witsenboer, Thomas W. Greene, Steven A. Thompson, Siva P. Kumpatla

ABSTRACT

The duplicated and the highly repetitive nature of the maize genome has historically impeded the development of true single nucleotide polymorphism (SNP) markers in this crop. Recent advances in genome complexity reduction methods coupled with sequencing-by-synthesis technologies permit the implementation of efficient genome-wide SNP discovery in maize. In this study, we have applied Complexity Reduction of Polymorphic Sequences technology (Keygene N.V., Wageningen, The Netherlands) for the identification of informative SNPs between two genetically distinct maize inbred lines of North and South American origins. This approach resulted in the discovery of 1,123 putative SNPs representing low and single copy loci. In silico and experimental (Illumina GoldenGate (GG) assay) validation of putative SNPs resulted in mapping of 604 markers, out of which 188 SNPs represented 43 haplotype blocks distributed across all ten chromosomes. We have determined and clearly stated a specific combination of stringent criteria (>0.3 minor allele frequency, >0.8 GenTrainScore and >0.5 Chi_test100 score) necessary for the identification of highly polymorphic and genetically stable SNP markers. Due to these criteria, we identified a subset of 120 high-quality SNP markers to leverage in GG assay-based marker-assisted selection projects. A total of 32 high-quality SNPs represented 21 haplotypes out of 43 identified in this study. The information on the selection criteria of highly polymorphic SNPs in a complex genome such as maize and the public availability of these SNP assays will be of great value for the maize molecular genetics and breeding community. More... »

PAGES

577-588

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s00122-010-1331-8

DOI

http://dx.doi.org/10.1007/s00122-010-1331-8

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1051550735

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/20401646


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Breeding", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Chromosome Mapping", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Chromosomes, Plant", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA Primers", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA, Plant", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genetic Linkage", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genetic Markers", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genome, Plant", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genotype", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Polymerase Chain Reaction", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Polymorphism, Single Nucleotide", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Zea mays", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA", 
          "id": "http://www.grid.ac/institutes/grid.418574.b", 
          "name": [
            "Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Mammadov", 
        "givenName": "Jafar A.", 
        "id": "sg:person.01264047545.21", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01264047545.21"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA", 
          "id": "http://www.grid.ac/institutes/grid.418574.b", 
          "name": [
            "Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Chen", 
        "givenName": "Wei", 
        "id": "sg:person.0663177655.69", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0663177655.69"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA", 
          "id": "http://www.grid.ac/institutes/grid.418574.b", 
          "name": [
            "Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Ren", 
        "givenName": "Ruihua", 
        "id": "sg:person.01077141727.07", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01077141727.07"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA", 
          "id": "http://www.grid.ac/institutes/grid.418574.b", 
          "name": [
            "Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Pai", 
        "givenName": "Reetal", 
        "id": "sg:person.01336150445.17", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01336150445.17"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA", 
          "id": "http://www.grid.ac/institutes/grid.418574.b", 
          "name": [
            "Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Marchione", 
        "givenName": "Wesley", 
        "id": "sg:person.01213370327.34", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01213370327.34"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "KEYGENE N.V., P.O. Box 216, 6700 AE, Wageningen, The Netherlands", 
          "id": "http://www.grid.ac/institutes/grid.425600.5", 
          "name": [
            "KEYGENE N.V., P.O. Box 216, 6700 AE, Wageningen, The Netherlands"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Yal\u00e7in", 
        "givenName": "Feyruz", 
        "id": "sg:person.01227676017.23", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01227676017.23"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "KEYGENE N.V., P.O. Box 216, 6700 AE, Wageningen, The Netherlands", 
          "id": "http://www.grid.ac/institutes/grid.425600.5", 
          "name": [
            "KEYGENE N.V., P.O. Box 216, 6700 AE, Wageningen, The Netherlands"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Witsenboer", 
        "givenName": "Hanneke", 
        "id": "sg:person.01130231723.24", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01130231723.24"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA", 
          "id": "http://www.grid.ac/institutes/grid.418574.b", 
          "name": [
            "Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Greene", 
        "givenName": "Thomas W.", 
        "id": "sg:person.016257533032.81", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016257533032.81"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA", 
          "id": "http://www.grid.ac/institutes/grid.418574.b", 
          "name": [
            "Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Thompson", 
        "givenName": "Steven A.", 
        "id": "sg:person.01311150007.81", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01311150007.81"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA", 
          "id": "http://www.grid.ac/institutes/grid.418574.b", 
          "name": [
            "Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kumpatla", 
        "givenName": "Siva P.", 
        "id": "sg:person.01032130304.58", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01032130304.58"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1038/ng1100", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013892609", 
          "https://doi.org/10.1038/ng1100"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00122-008-0726-2", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049174876", 
          "https://doi.org/10.1007/s00122-008-0726-2"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11032-009-9281-z", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1006969680", 
          "https://doi.org/10.1007/s11032-009-9281-z"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2156-3-19", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048046969", 
          "https://doi.org/10.1186/1471-2156-3-19"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nmeth1109", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1009647980", 
          "https://doi.org/10.1038/nmeth1109"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/978-0-387-36011-9_5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1006645223", 
          "https://doi.org/10.1007/978-0-387-36011-9_5"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2010-04-18", 
    "datePublishedReg": "2010-04-18", 
    "description": "The duplicated and the highly repetitive nature of the maize genome has historically impeded the development of true single nucleotide polymorphism (SNP) markers in this crop. Recent advances in genome complexity reduction methods coupled with sequencing-by-synthesis technologies permit the implementation of efficient genome-wide SNP discovery in maize. In this study, we have applied Complexity Reduction of Polymorphic Sequences technology (Keygene N.V., Wageningen, The Netherlands) for the identification of informative SNPs between two genetically distinct maize inbred lines of North and South American origins. This approach resulted in the discovery of 1,123 putative SNPs representing low and single copy loci. In silico and experimental (Illumina GoldenGate (GG) assay) validation of putative SNPs resulted in mapping of 604 markers, out of which 188 SNPs represented 43 haplotype blocks distributed across all ten chromosomes. We have determined and clearly stated a specific combination of stringent criteria (>0.3 minor allele frequency, >0.8 GenTrainScore and >0.5 Chi_test100 score) necessary for the identification of highly polymorphic and genetically stable SNP markers. Due to these criteria, we identified a subset of 120 high-quality SNP markers to leverage in GG assay-based marker-assisted selection projects. A total of 32 high-quality SNPs represented 21 haplotypes out of 43 identified in this study. The information on the selection criteria of highly polymorphic SNPs in a complex genome such as maize and the public availability of these SNP assays will be of great value for the maize molecular genetics and breeding community.", 
    "genre": "article", 
    "id": "sg:pub.10.1007/s00122-010-1331-8", 
    "inLanguage": "en", 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1135804", 
        "issn": [
          "0040-5752", 
          "1432-2242"
        ], 
        "name": "Theoretical and Applied Genetics", 
        "publisher": "Springer Nature", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "3", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "121"
      }
    ], 
    "keywords": [
      "SNP markers", 
      "maize genome", 
      "putative SNPs", 
      "Genome-wide SNP discovery", 
      "high-quality SNP markers", 
      "single nucleotide polymorphism (SNP) markers", 
      "high-quality SNPs", 
      "polymorphic SNP markers", 
      "marker-assisted breeding", 
      "single-copy loci", 
      "South American origin", 
      "SNP discovery", 
      "distinct maize", 
      "complex genomes", 
      "breeding community", 
      "polymorphic SNPs", 
      "polymorphism markers", 
      "informative SNPs", 
      "sequence technology", 
      "molecular genetics", 
      "SNP assays", 
      "genome", 
      "haplotype blocks", 
      "SNPs", 
      "American origin", 
      "maize", 
      "selection project", 
      "repetitive nature", 
      "recent advances", 
      "markers", 
      "complexity reduction method", 
      "chromosomes", 
      "specific combinations", 
      "breeding", 
      "discovery", 
      "loci", 
      "genetics", 
      "public availability", 
      "sequencing", 
      "identification", 
      "haplotypes", 
      "crops", 
      "assays", 
      "stringent criteria", 
      "development", 
      "availability", 
      "lines", 
      "synthesis technology", 
      "origin", 
      "community", 
      "mapping", 
      "great value", 
      "experimental validation", 
      "advances", 
      "portion", 
      "subset", 
      "study", 
      "north", 
      "combination", 
      "selection criteria", 
      "GG", 
      "nature", 
      "total", 
      "information", 
      "complexity", 
      "reduction", 
      "technology", 
      "validation", 
      "approach", 
      "block", 
      "use", 
      "method", 
      "values", 
      "project", 
      "criteria", 
      "complexity reduction", 
      "reduction method", 
      "implementation"
    ], 
    "name": "Development of highly polymorphic SNP markers from the complexity reduced portion of maize [Zea mays L.] genome for use in marker-assisted breeding", 
    "pagination": "577-588", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1051550735"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/s00122-010-1331-8"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "20401646"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/s00122-010-1331-8", 
      "https://app.dimensions.ai/details/publication/pub.1051550735"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2022-06-01T22:10", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20220601/entities/gbq_results/article/article_527.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://doi.org/10.1007/s00122-010-1331-8"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00122-010-1331-8'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00122-010-1331-8'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00122-010-1331-8'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00122-010-1331-8'


 

This table displays all metadata directly associated to this object as RDF triples.

278 TRIPLES      22 PREDICATES      122 URIs      108 LITERALS      19 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/s00122-010-1331-8 schema:about N23cc5628ac77462f90da9317c3aac965
2 N45bbcbeb38774099b240b2989c094b76
3 N486760719da8423cb68a56b7e730c0bb
4 N67bec7b6d87349acb70c027446da60f1
5 Nbcf10efec67b40e58cb594435e5f3cac
6 Nc6aae8db822b4f9ba9167c7b60f57a13
7 Nc8bc5ea24456468d95787228bf65968f
8 Nd2d1cd1e46204298aff11b664dc6b06a
9 Ne450a97cb50842dab9665684ca6ab26e
10 Nea640059dda6495b8fd4087611d1b11b
11 Nf3ba78d01e7548ca83a69f5de8d31faa
12 Nf428a05dc43c4f159ac81f1722a8677c
13 anzsrc-for:06
14 anzsrc-for:0604
15 schema:author Nb03e6ab452d74fab958efdef9c30d2a0
16 schema:citation sg:pub.10.1007/978-0-387-36011-9_5
17 sg:pub.10.1007/s00122-008-0726-2
18 sg:pub.10.1007/s11032-009-9281-z
19 sg:pub.10.1038/ng1100
20 sg:pub.10.1038/nmeth1109
21 sg:pub.10.1186/1471-2156-3-19
22 schema:datePublished 2010-04-18
23 schema:datePublishedReg 2010-04-18
24 schema:description The duplicated and the highly repetitive nature of the maize genome has historically impeded the development of true single nucleotide polymorphism (SNP) markers in this crop. Recent advances in genome complexity reduction methods coupled with sequencing-by-synthesis technologies permit the implementation of efficient genome-wide SNP discovery in maize. In this study, we have applied Complexity Reduction of Polymorphic Sequences technology (Keygene N.V., Wageningen, The Netherlands) for the identification of informative SNPs between two genetically distinct maize inbred lines of North and South American origins. This approach resulted in the discovery of 1,123 putative SNPs representing low and single copy loci. In silico and experimental (Illumina GoldenGate (GG) assay) validation of putative SNPs resulted in mapping of 604 markers, out of which 188 SNPs represented 43 haplotype blocks distributed across all ten chromosomes. We have determined and clearly stated a specific combination of stringent criteria (>0.3 minor allele frequency, >0.8 GenTrainScore and >0.5 Chi_test100 score) necessary for the identification of highly polymorphic and genetically stable SNP markers. Due to these criteria, we identified a subset of 120 high-quality SNP markers to leverage in GG assay-based marker-assisted selection projects. A total of 32 high-quality SNPs represented 21 haplotypes out of 43 identified in this study. The information on the selection criteria of highly polymorphic SNPs in a complex genome such as maize and the public availability of these SNP assays will be of great value for the maize molecular genetics and breeding community.
25 schema:genre article
26 schema:inLanguage en
27 schema:isAccessibleForFree false
28 schema:isPartOf N35e8d2d3f7194bb481fb2dac41cf8af9
29 N6d222a672b3c4cde834b67cac1ba94fc
30 sg:journal.1135804
31 schema:keywords American origin
32 GG
33 Genome-wide SNP discovery
34 SNP assays
35 SNP discovery
36 SNP markers
37 SNPs
38 South American origin
39 advances
40 approach
41 assays
42 availability
43 block
44 breeding
45 breeding community
46 chromosomes
47 combination
48 community
49 complex genomes
50 complexity
51 complexity reduction
52 complexity reduction method
53 criteria
54 crops
55 development
56 discovery
57 distinct maize
58 experimental validation
59 genetics
60 genome
61 great value
62 haplotype blocks
63 haplotypes
64 high-quality SNP markers
65 high-quality SNPs
66 identification
67 implementation
68 information
69 informative SNPs
70 lines
71 loci
72 maize
73 maize genome
74 mapping
75 marker-assisted breeding
76 markers
77 method
78 molecular genetics
79 nature
80 north
81 origin
82 polymorphic SNP markers
83 polymorphic SNPs
84 polymorphism markers
85 portion
86 project
87 public availability
88 putative SNPs
89 recent advances
90 reduction
91 reduction method
92 repetitive nature
93 selection criteria
94 selection project
95 sequence technology
96 sequencing
97 single nucleotide polymorphism (SNP) markers
98 single-copy loci
99 specific combinations
100 stringent criteria
101 study
102 subset
103 synthesis technology
104 technology
105 total
106 use
107 validation
108 values
109 schema:name Development of highly polymorphic SNP markers from the complexity reduced portion of maize [Zea mays L.] genome for use in marker-assisted breeding
110 schema:pagination 577-588
111 schema:productId N46a6670d57c04fe4a93fe860b2445af0
112 N5ac8a16907db4750b4da40f15a4376a7
113 Nfdbd6a2c46f641bfae6fc97937bee1bc
114 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051550735
115 https://doi.org/10.1007/s00122-010-1331-8
116 schema:sdDatePublished 2022-06-01T22:10
117 schema:sdLicense https://scigraph.springernature.com/explorer/license/
118 schema:sdPublisher N2b7a4875da3c4225b2ffd818fe9cbfea
119 schema:url https://doi.org/10.1007/s00122-010-1331-8
120 sgo:license sg:explorer/license/
121 sgo:sdDataset articles
122 rdf:type schema:ScholarlyArticle
123 N23cc5628ac77462f90da9317c3aac965 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
124 schema:name DNA Primers
125 rdf:type schema:DefinedTerm
126 N2b7a4875da3c4225b2ffd818fe9cbfea schema:name Springer Nature - SN SciGraph project
127 rdf:type schema:Organization
128 N35e8d2d3f7194bb481fb2dac41cf8af9 schema:volumeNumber 121
129 rdf:type schema:PublicationVolume
130 N45bbcbeb38774099b240b2989c094b76 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
131 schema:name Genotype
132 rdf:type schema:DefinedTerm
133 N46a6670d57c04fe4a93fe860b2445af0 schema:name doi
134 schema:value 10.1007/s00122-010-1331-8
135 rdf:type schema:PropertyValue
136 N486760719da8423cb68a56b7e730c0bb schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
137 schema:name Genetic Markers
138 rdf:type schema:DefinedTerm
139 N5540559354304193b5f878350da5e22e rdf:first sg:person.01311150007.81
140 rdf:rest Nc9cdc7fc8004475da6f1babb43a8355e
141 N5ac8a16907db4750b4da40f15a4376a7 schema:name pubmed_id
142 schema:value 20401646
143 rdf:type schema:PropertyValue
144 N67bec7b6d87349acb70c027446da60f1 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
145 schema:name DNA, Plant
146 rdf:type schema:DefinedTerm
147 N6d222a672b3c4cde834b67cac1ba94fc schema:issueNumber 3
148 rdf:type schema:PublicationIssue
149 N81d1cdc44ac4443cbd73b6a05ee14b43 rdf:first sg:person.01130231723.24
150 rdf:rest Na00a0ea65d2244c49a477402f0f115e4
151 N9932f10a8fd44ea7af144d7b75bc2793 rdf:first sg:person.01213370327.34
152 rdf:rest Ne1e0ec00b6ad47d795ffc375e0e89c44
153 Na00a0ea65d2244c49a477402f0f115e4 rdf:first sg:person.016257533032.81
154 rdf:rest N5540559354304193b5f878350da5e22e
155 Na5d8c10408cd4e2586d3740d64be42ab rdf:first sg:person.0663177655.69
156 rdf:rest Ndfabd3e75dbc488b8f9c7190042f1337
157 Nb03e6ab452d74fab958efdef9c30d2a0 rdf:first sg:person.01264047545.21
158 rdf:rest Na5d8c10408cd4e2586d3740d64be42ab
159 Nbcf10efec67b40e58cb594435e5f3cac schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
160 schema:name Genome, Plant
161 rdf:type schema:DefinedTerm
162 Nc6aae8db822b4f9ba9167c7b60f57a13 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
163 schema:name Polymorphism, Single Nucleotide
164 rdf:type schema:DefinedTerm
165 Nc8bc5ea24456468d95787228bf65968f schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
166 schema:name Breeding
167 rdf:type schema:DefinedTerm
168 Nc9cdc7fc8004475da6f1babb43a8355e rdf:first sg:person.01032130304.58
169 rdf:rest rdf:nil
170 Nd2d1cd1e46204298aff11b664dc6b06a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
171 schema:name Chromosomes, Plant
172 rdf:type schema:DefinedTerm
173 Ndfabd3e75dbc488b8f9c7190042f1337 rdf:first sg:person.01077141727.07
174 rdf:rest Nf3532002093244a9b4ff5a41155be4df
175 Ne1e0ec00b6ad47d795ffc375e0e89c44 rdf:first sg:person.01227676017.23
176 rdf:rest N81d1cdc44ac4443cbd73b6a05ee14b43
177 Ne450a97cb50842dab9665684ca6ab26e schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
178 schema:name Genetic Linkage
179 rdf:type schema:DefinedTerm
180 Nea640059dda6495b8fd4087611d1b11b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
181 schema:name Chromosome Mapping
182 rdf:type schema:DefinedTerm
183 Nf3532002093244a9b4ff5a41155be4df rdf:first sg:person.01336150445.17
184 rdf:rest N9932f10a8fd44ea7af144d7b75bc2793
185 Nf3ba78d01e7548ca83a69f5de8d31faa schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
186 schema:name Zea mays
187 rdf:type schema:DefinedTerm
188 Nf428a05dc43c4f159ac81f1722a8677c schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
189 schema:name Polymerase Chain Reaction
190 rdf:type schema:DefinedTerm
191 Nfdbd6a2c46f641bfae6fc97937bee1bc schema:name dimensions_id
192 schema:value pub.1051550735
193 rdf:type schema:PropertyValue
194 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
195 schema:name Biological Sciences
196 rdf:type schema:DefinedTerm
197 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
198 schema:name Genetics
199 rdf:type schema:DefinedTerm
200 sg:journal.1135804 schema:issn 0040-5752
201 1432-2242
202 schema:name Theoretical and Applied Genetics
203 schema:publisher Springer Nature
204 rdf:type schema:Periodical
205 sg:person.01032130304.58 schema:affiliation grid-institutes:grid.418574.b
206 schema:familyName Kumpatla
207 schema:givenName Siva P.
208 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01032130304.58
209 rdf:type schema:Person
210 sg:person.01077141727.07 schema:affiliation grid-institutes:grid.418574.b
211 schema:familyName Ren
212 schema:givenName Ruihua
213 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01077141727.07
214 rdf:type schema:Person
215 sg:person.01130231723.24 schema:affiliation grid-institutes:grid.425600.5
216 schema:familyName Witsenboer
217 schema:givenName Hanneke
218 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01130231723.24
219 rdf:type schema:Person
220 sg:person.01213370327.34 schema:affiliation grid-institutes:grid.418574.b
221 schema:familyName Marchione
222 schema:givenName Wesley
223 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01213370327.34
224 rdf:type schema:Person
225 sg:person.01227676017.23 schema:affiliation grid-institutes:grid.425600.5
226 schema:familyName Yalçin
227 schema:givenName Feyruz
228 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01227676017.23
229 rdf:type schema:Person
230 sg:person.01264047545.21 schema:affiliation grid-institutes:grid.418574.b
231 schema:familyName Mammadov
232 schema:givenName Jafar A.
233 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01264047545.21
234 rdf:type schema:Person
235 sg:person.01311150007.81 schema:affiliation grid-institutes:grid.418574.b
236 schema:familyName Thompson
237 schema:givenName Steven A.
238 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01311150007.81
239 rdf:type schema:Person
240 sg:person.01336150445.17 schema:affiliation grid-institutes:grid.418574.b
241 schema:familyName Pai
242 schema:givenName Reetal
243 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01336150445.17
244 rdf:type schema:Person
245 sg:person.016257533032.81 schema:affiliation grid-institutes:grid.418574.b
246 schema:familyName Greene
247 schema:givenName Thomas W.
248 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016257533032.81
249 rdf:type schema:Person
250 sg:person.0663177655.69 schema:affiliation grid-institutes:grid.418574.b
251 schema:familyName Chen
252 schema:givenName Wei
253 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0663177655.69
254 rdf:type schema:Person
255 sg:pub.10.1007/978-0-387-36011-9_5 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006645223
256 https://doi.org/10.1007/978-0-387-36011-9_5
257 rdf:type schema:CreativeWork
258 sg:pub.10.1007/s00122-008-0726-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049174876
259 https://doi.org/10.1007/s00122-008-0726-2
260 rdf:type schema:CreativeWork
261 sg:pub.10.1007/s11032-009-9281-z schema:sameAs https://app.dimensions.ai/details/publication/pub.1006969680
262 https://doi.org/10.1007/s11032-009-9281-z
263 rdf:type schema:CreativeWork
264 sg:pub.10.1038/ng1100 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013892609
265 https://doi.org/10.1038/ng1100
266 rdf:type schema:CreativeWork
267 sg:pub.10.1038/nmeth1109 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009647980
268 https://doi.org/10.1038/nmeth1109
269 rdf:type schema:CreativeWork
270 sg:pub.10.1186/1471-2156-3-19 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048046969
271 https://doi.org/10.1186/1471-2156-3-19
272 rdf:type schema:CreativeWork
273 grid-institutes:grid.418574.b schema:alternateName Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA
274 schema:name Dow AgroSciences, 9330 Zionsville Rd, 46268-1054, Indianapolis, IN, USA
275 rdf:type schema:Organization
276 grid-institutes:grid.425600.5 schema:alternateName KEYGENE N.V., P.O. Box 216, 6700 AE, Wageningen, The Netherlands
277 schema:name KEYGENE N.V., P.O. Box 216, 6700 AE, Wageningen, The Netherlands
278 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...