Allelic configuration and polysomic inheritance of highly variable microsatellites in tetraploid gynodioecious Thymus praecox agg. View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2006-06-20

AUTHORS

Urs Landergott, Yamama Naciri, J. Jakob Schneller, Rolf Holderegger

ABSTRACT

Polyploidy plays a pivotal role in plant evolution. However, polyploids with polysomic inheritance have hitherto been severely underrepresented in plant population genetic studies, mainly due to a lack of appropriate molecular genetic markers. Here we report the establishment and experimental validation of six fully informative microsatellite markers in tetraploid gynodioecious Thymus praecox agg. Sequence data of 150 microsatellite alleles and their flanking regions revealed high variation, which may be characteristic for polyploids with a reticulate evolutionary history. Understanding the patterns of mutation (indels and substitutions) in microsatellite flanking-sequences was a prerequisite for the development of co-dominant markers for fragment analyses. Allelic segregation patterns among progeny arrays from ten test crosses revealed tetrasomic inheritance in T. praecox agg. No evidence of frequent double reduction was detected. Polymerase chain reaction (PCR) based dosage effects allowed for precise assignment of allelic configuration at all six microsatellite loci. The quantification of allele copy numbers in PCR was verified by comparisons of observed and expected gametic allele frequencies and heterozygosities in test crosses. Our study illustrates how PCR based markers can provide reliable estimates of heterozygosity and, thus, powerful tools for breeding system and population genetic analyses in polyploid organisms. More... »

PAGES

453-465

References to SciGraph publications

  • 2003-04-11. Outcrossing rate and inbreeding depression in the herbaceous autotetraploid, Campanula americana in HEREDITY
  • 1999-07. Sequence characterization of microsatellites in diploid and polyploid Ipomoea in THEORETICAL AND APPLIED GENETICS
  • 2005-08-10. Estimation of allele frequencies in polyploids under certain patterns of inheritance in HEREDITY
  • 2005-09-06. Genetic diversity among alfalfa (Medicago sativa) cultivars coming from a breeding program, using SSR markers in THEORETICAL AND APPLIED GENETICS
  • 2001-08-01. Allozyme segregation and inter-cytotype reproductive barriers in the polyploid complex Centaurea jacea in HEREDITY
  • 2001-09-01. Historical bottlenecks decrease genetic diversity in natural populations of Dryopteris cristata in HEREDITY
  • 2003-12-19. Construction of two genetic linkage maps in cultivated tetraploid alfalfa (Medicago sativa) using microsatellite and AFLP markers in BMC PLANT BIOLOGY
  • 2002-01. Evaluating the potential of SSR flanking regions for examining taxonomic relationships in the Vitaceae in THEORETICAL AND APPLIED GENETICS
  • 2000-01. Genome evolution in polyploids in PLANT MOLECULAR BIOLOGY
  • 2003-12-17. Microsatellite DNA marker inheritance indicates preferential pairing between two highly homologous genomes in polyploid and hemisexual dog-roses, Rosa L. Sect. Caninae DC. in HEREDITY
  • 2004-04-14. Assignment of allelic configuration in polyploids using the MAC-PR (microsatellite DNA allele counting—peak ratios) method in THEORETICAL AND APPLIED GENETICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s00122-006-0310-6

    DOI

    http://dx.doi.org/10.1007/s00122-006-0310-6

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1034058809

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/16786342


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