Assessing genetic diversity and population structure in a citrus germplasm collection utilizing simple sequence repeat markers (SSRs) View Full Text


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Article Info

DATE

2006-05

AUTHORS

Noelle A. Barkley, Mikeal L. Roose, Robert R. Krueger, Claire T. Federici

ABSTRACT

Twenty-four simple sequence repeat (SSR) markers were used to detect molecular polymorphisms among 370 mostly sexually derived Citrus accessions from the collection of citrus germplasm maintained at the University of California, Riverside. A total of 275 alleles were detected with an average of 11.5 alleles per locus and an average polymorphism information content of 0.625. Genetic diversity statistics were calculated for each individual SSR marker, the entire population, and for specified Citrus groups. Phylogenetic relationships among all citrus accessions and putative non-hybrid Citrus accessions were determined by constructing neighbor-joining trees. There was strong support for monophyly at the species level when hybrid taxa were removed from the data set. Both of these trees indicate that Fortunella clusters within the genus Citrus but Poncirus is a sister genus to Citrus. Additionally, Citrus accessions were probabilistically assigned to populations or multiple populations if their genotype indicated an admixture by a model-based clustering approach. This approach identified five populations in this data set. These separate analyses (distance and model based) both support the hypothesis that there are only a few naturally occurring species of Citrus and most other types of Citrus arose through various hybridization events between these naturally occurring forms. More... »

PAGES

1519-1531

References to SciGraph publications

  • 1998-05. Phylogenetic relationships within the genus Citrus (Rutaceae) and related genera as revealed by RFLP and RAPD analysis in THEORETICAL AND APPLIED GENETICS
  • 1996-07. Multiple methods for the identification of polymorphic simple sequence repeats (SSRs) in sorghum [Sorghum bicolor (L.) Moench] in THEORETICAL AND APPLIED GENETICS
  • 1990-08. DNA extraction from a previously recalcitrant plant genus in PLANT MOLECULAR BIOLOGY REPORTER
  • 1997-04. Integration of trinucleotide microsatellites into a linkage map of Citrus in THEORETICAL AND APPLIED GENETICS
  • 1997-07. Fingerprinting trifoliate orange germ plasm accessions with isozymes, RFLPs, and inter-simple sequence repeat markers in THEORETICAL AND APPLIED GENETICS
  • 1997-08. Identification of closely related citrus cultivars with inter-simple sequence repeat markers in THEORETICAL AND APPLIED GENETICS
  • 1998-10. Microsatellite (SSR) markers reveal genetic identities, genetic diversity and relationships in a Malus√ódomestica borkh. core subset collection in THEORETICAL AND APPLIED GENETICS
  • 1986-03. The plastome of Citrus. Physical map, variation among Citrus cultivars and species and comparison with related genera in THEORETICAL AND APPLIED GENETICS
  • 1994-03. High resolution of human evolutionary trees with polymorphic microsatellites in NATURE
  • 2000-06. Citrus phylogeny and genetic origin of important species as investigated by molecular markers in THEORETICAL AND APPLIED GENETICS
  • 1996-04. Genetic diversity in the orange subfamily Aurantioideae. I. Intraspecies and intragenus genetic variability in THEORETICAL AND APPLIED GENETICS
  • 1992-06. A genetic map of citrus based on the segregation of isozymes and RFLPs in an intergeneric cross in THEORETICAL AND APPLIED GENETICS
  • 2002. Molecular Techniques in Crop Improvement in NONE
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s00122-006-0255-9

    DOI

    http://dx.doi.org/10.1007/s00122-006-0255-9

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1001683278

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/16699791


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    49 schema:description Twenty-four simple sequence repeat (SSR) markers were used to detect molecular polymorphisms among 370 mostly sexually derived Citrus accessions from the collection of citrus germplasm maintained at the University of California, Riverside. A total of 275 alleles were detected with an average of 11.5 alleles per locus and an average polymorphism information content of 0.625. Genetic diversity statistics were calculated for each individual SSR marker, the entire population, and for specified Citrus groups. Phylogenetic relationships among all citrus accessions and putative non-hybrid Citrus accessions were determined by constructing neighbor-joining trees. There was strong support for monophyly at the species level when hybrid taxa were removed from the data set. Both of these trees indicate that Fortunella clusters within the genus Citrus but Poncirus is a sister genus to Citrus. Additionally, Citrus accessions were probabilistically assigned to populations or multiple populations if their genotype indicated an admixture by a model-based clustering approach. This approach identified five populations in this data set. These separate analyses (distance and model based) both support the hypothesis that there are only a few naturally occurring species of Citrus and most other types of Citrus arose through various hybridization events between these naturally occurring forms.
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