Genetic relationships within Brassica rapa as inferred from AFLP fingerprints View Full Text


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Article Info

DATE

2005-04-02

AUTHORS

Jianjun Zhao, Xiaowu Wang, Bo Deng, Ping Lou, Jian Wu, Rifei Sun, Zeyong Xu, Jaap Vromans, Maarten Koornneef, Guusje Bonnema

ABSTRACT

Amplified fragment length polymorphism (AFLP) markers were employed to assess the genetic diversity amongst two large collections of Brassica rapa accessions. Collection A consisted of 161 B. rapa accessions representing different morphotypes among the cultivated B. rapa, including traditional and modern cultivars and breeding materials from geographical locations from all over the world and two Brassica napus accessions. Collection B consisted of 96 accessions, representing mainly leafy vegetable types cultivated in China. On the basis of the AFLP data obtained, we constructed phenetic trees using mega 2.1 software. The level of polymorphism was very high, and it was evident that the amount of genetic variation present within the groups was often comparable to the variation between the different cultivar groups. Cluster analysis revealed groups, often with low bootstrap values, which coincided with cultivar groups. The most interesting information revealed by the phenetic trees was that different morphotypes are often more related to other morphotypes from the same region (East Asia vs. Europe) than to similar morphotypes from different regions, suggesting either an independent origin and or a long and separate domestication and breeding history in both regions. More... »

PAGES

1301-1314

References to SciGraph publications

  • 1999-12-01. Assessment of genetic variation withinBrassica campestris cultivars using amplified fragment length polymorphism and random amplification of polymorphic DNA markers in JOURNAL OF BIOSCIENCES
  • 1988-10. Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs) in THEORETICAL AND APPLIED GENETICS
  • 1990-04. Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs) in THEORETICAL AND APPLIED GENETICS
  • 2001-02. AFLP-based genetic diversity assessment amongst agronomically important natural and some newly synthesized lines of Brassica juncea in THEORETICAL AND APPLIED GENETICS
  • 2002-12. Highly polymorphic AFLP markers as a complementary tool to ITS sequences in assessing genetic diversity and phylogenetic relationships of sweetpotato (Ipomoea batatas (L.) Lam.) and its wild relatives in GENETIC RESOURCES AND CROP EVOLUTION
  • 1992-09. Potential taxonomic use of random amplified polymorphic DNA (RAPD): a case study in Brassica in THEORETICAL AND APPLIED GENETICS
  • 1992-06. Mapping strategy for resistance genes in tomato based on RFLPs between cultivars: Cf9 (resistance to Cladosporium fulvum) on chromosome 1 in THEORETICAL AND APPLIED GENETICS
  • 1996-09. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis in MOLECULAR BREEDING
  • 1994-09. Comparison of RFLP and RAPD markers to estimating genetic relationships within and among cruciferous species in THEORETICAL AND APPLIED GENETICS
  • 1994-04. Potential use of random amplified polymorphic DNA (RAPD) technique to study the genetic diversity in Indian mustard (Brassica juncea) and its relationship to heterosis in THEORETICAL AND APPLIED GENETICS
  • 1988-05. Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs) in THEORETICAL AND APPLIED GENETICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s00122-005-1967-y

    DOI

    http://dx.doi.org/10.1007/s00122-005-1967-y

    DIMENSIONS

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    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/15806345


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    65 information
    66 interesting information
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    68 leafy vegetable type
    69 length polymorphism markers
    70 level of polymorphism
    71 levels
    72 location
    73 low bootstrap values
    74 markers
    75 materials
    76 modern cultivars
    77 morphotypes
    78 napus accessions
    79 origin
    80 phenetic tree
    81 polymorphism
    82 polymorphism markers
    83 rapa
    84 rapa accessions
    85 region
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    90 software
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