Mapping and tagging of seed coat colour and the identification of microsatellite markers for marker-assisted manipulation of the trait in ... View Full Text


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Article Info

DATE

2005-06

AUTHORS

K. Lakshmi Padmaja, N. Arumugam, V. Gupta, A. Mukhopadhyay, Y. S. Sodhi, D. Pental, A. K. Pradhan

ABSTRACT

Microsatellite marker technology in combination with three doubled haploid mapping populations of Brassica juncea were used to map and tag two independent loci controlling seed coat colour in B. juncea. One of the populations, derived from a cross between a brown-seeded Indian cultivar, Varuna, and a Canadian yellow-seeded line, Heera, segregated for two genes coding for seed coat colour; the other two populations segregated for one gene each. Microsatellite markers were obtained from related Brassica species. Three microsatellite markers (Ra2-A11, Na10-A08 and Ni4-F11) showing strong association with seed coat colour were identified through bulk segregant analysis. Subsequent mapping placed Ra2-A11 and Na10-A08 on linkage group (LG) 1 at an interval of 0.6 cM from each other and marker Ni4-F11 on LG 2 of the linkage map of B. juncea published previously (Pradhan et al., Theor Appl Genet 106:607-614, 2003). The two seed coat colour genes were placed with markers Ra2-A11 and Na10-A08 on LG 1 and Ni4-F11 on LG 2 based on marker genotyping data derived from the two mapping populations segregating for one gene each. One of the genes (BjSC1) co-segregated with marker Na10-A08 in LG 1 and the other gene (BjSC2) with Ni4-F11 in LG 2, without any recombination in the respective mapping populations of 130 and 103 segregating plants. The identified microsatellite markers were studied for their length polymorphism in a number of yellow-seeded eastern European and brown-seeded Indian germplasm of B. juncea and were found to be useful for the diversification of yellow seed coat colour from a variety of sources into Indian germplasm. More... »

PAGES

8-14

References to SciGraph publications

  • 2004-06. Mapping of AFLP markers linked to seed coat colour loci in Brassica juncea (L.) Czern in THEORETICAL AND APPLIED GENETICS
  • 2005-01. Inheritance of seed colour and identification of RAPD and AFLP markers linked to the seed colour gene in rapeseed (Brassica napus L.) in THEORETICAL AND APPLIED GENETICS
  • 1994. Extraction of total cellular DNA from plants, algae and fungi in PLANT MOLECULAR BIOLOGY MANUAL
  • 2001-02. AFLP-based genetic diversity assessment amongst agronomically important natural and some newly synthesized lines of Brassica juncea in THEORETICAL AND APPLIED GENETICS
  • 2004-08. Genetic analysis of agronomic and quality traits in mustard (Brassica juncea) in THEORETICAL AND APPLIED GENETICS
  • 2003-02. A high-density linkage map in Brassica juncea (Indian mustard) using AFLP and RFLP markers in THEORETICAL AND APPLIED GENETICS
  • 2000-07. Identification of AFLP fragments linked to seed coat colour in Brassica juncea and conversion to a SCAR marker for rapid selection in THEORETICAL AND APPLIED GENETICS
  • 2001-04. Microsatellite markers for genome analysis in Brassica. I. development in Brassica napus and abundance in Brassicaceae species in THEORETICAL AND APPLIED GENETICS
  • 2001-04. Microsatellite markers for genome analysis in Brassica. II. Assignment of rapeseed microsatellites to the A and C genomes and genetic mapping in Brassica oleracea L. in THEORETICAL AND APPLIED GENETICS
  • 2004-04. Efficient large-scale development of microsatellites for marker and mapping applications in Brassica crop species in THEORETICAL AND APPLIED GENETICS
  • 1999-03. Allelic variation at (TAA)n microsatellite loci in a world collection of chickpea (Cicer arietinum L.) germplasm in MOLECULAR GENETICS AND GENOMICS
  • 2002-05. Isolation and characterization of microsatellites in Brassica rapa L. in THEORETICAL AND APPLIED GENETICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s00122-005-1933-8

    DOI

    http://dx.doi.org/10.1007/s00122-005-1933-8

    DIMENSIONS

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    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/15902399


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    37 schema:description Microsatellite marker technology in combination with three doubled haploid mapping populations of Brassica juncea were used to map and tag two independent loci controlling seed coat colour in B. juncea. One of the populations, derived from a cross between a brown-seeded Indian cultivar, Varuna, and a Canadian yellow-seeded line, Heera, segregated for two genes coding for seed coat colour; the other two populations segregated for one gene each. Microsatellite markers were obtained from related Brassica species. Three microsatellite markers (Ra2-A11, Na10-A08 and Ni4-F11) showing strong association with seed coat colour were identified through bulk segregant analysis. Subsequent mapping placed Ra2-A11 and Na10-A08 on linkage group (LG) 1 at an interval of 0.6 cM from each other and marker Ni4-F11 on LG 2 of the linkage map of B. juncea published previously (Pradhan et al., Theor Appl Genet 106:607-614, 2003). The two seed coat colour genes were placed with markers Ra2-A11 and Na10-A08 on LG 1 and Ni4-F11 on LG 2 based on marker genotyping data derived from the two mapping populations segregating for one gene each. One of the genes (BjSC1) co-segregated with marker Na10-A08 in LG 1 and the other gene (BjSC2) with Ni4-F11 in LG 2, without any recombination in the respective mapping populations of 130 and 103 segregating plants. The identified microsatellite markers were studied for their length polymorphism in a number of yellow-seeded eastern European and brown-seeded Indian germplasm of B. juncea and were found to be useful for the diversification of yellow seed coat colour from a variety of sources into Indian germplasm.
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