Assignment of allelic configuration in polyploids using the MAC-PR (microsatellite DNA allele counting—peak ratios) method View Full Text


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Article Info

DATE

2004-07

AUTHORS

G. D. Esselink, H. Nybom, B. Vosman

ABSTRACT

Polysomic inheritance frequently results in the simultaneous occurrence of several microsatellite DNA alleles on a single locus. The MAC-PR (microsatellite DNA allele counting-peak ratios) method was recently developed for the analysis of polyploid plants and makes use of the quantitative values for microsatellite allele peak areas. To date, this approach has only been used in plants with known genetic relationships. We report here the application of MAC-PR for the first time to random samples of unknown pedigrees. We analysed six microsatellite loci using a set of tetraploid ornamental rose ( Rosa x hybrida L.) varieties. For each locus, all alleles were analysed in pairwise combinations in order to determine their copy number in the individual samples. This was accomplished by calculating the ratios between the peak areas for two alleles in all of the samples where these two alleles occurred together. The allele peak ratios observed were plotted in a histogram, and those histograms that produced at least two well-separated groups were selected for further analysis. Mean allelic peak ratio values for these groups were compared to the relationships expected between alleles in hypothetical configurations of the locus investigated. Using this approach, we were able to assign precise allelic configurations (the actual genotype) to almost all of the varieties analysed for five of the six loci investigated. MAC-PR also appears to be a very effective tool for detecting 'null' alleles in polyploid species. More... »

PAGES

402-408

References to SciGraph publications

  • 2002-12. Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.) in MOLECULAR BREEDING
  • 2003-08. Characterization of mixed disomic and polysomic inheritance in the octoploid strawberry (Fragaria × ananassa) using AFLP mapping in THEORETICAL AND APPLIED GENETICS
  • 1996-06. Microsatellite analysis of relationships within cultivated potato (Solanum tuberosum) in THEORETICAL AND APPLIED GENETICS
  • 2003-01. Identification of cut rose (Rosa hybrida) and rootstock varieties using robust sequence tagged microsatellite site markers in THEORETICAL AND APPLIED GENETICS
  • 1992-01. The detection and estimation of linkage in polyploids using single-dose restriction fragments in THEORETICAL AND APPLIED GENETICS
  • 2003-11. High variability and disomic segregation of microsatellites in the octoploid Fragaria virginiana Mill. (Rosaceae) in THEORETICAL AND APPLIED GENETICS
  • 2003-11. Isolation and characterization of simple sequence repeat markers in the hexaploid forage grass timothy (Phleum pratense L.) in THEORETICAL AND APPLIED GENETICS
  • 2000-05. A comparative assessment of DNA fingerprinting techniques (RAPD, ISSR, AFLP and SSR) in tetraploid potato (Solanum tuberosum L.) germplasm in EUPHYTICA
  • 2004-03. Microsatellite DNA marker inheritance indicates preferential pairing between two highly homologous genomes in polyploid and hemisexual dog-roses, Rosa L. Sect. Caninae DC. in HEREDITY
  • 1998-12. Microsatellite DNA in Actinidia chinensis: isolation, characterisation, and homology in related species in THEORETICAL AND APPLIED GENETICS
  • 2000-09. Microsatellites for cultivar identification in Pelargonium in THEORETICAL AND APPLIED GENETICS
  • 1998-07. Development and characterization of microsatellite markers in the sexual-apomictic complex Taraxacum officinale (dandelion) in THEORETICAL AND APPLIED GENETICS
  • 2003-09. Microsatellite analysis reveals a progressive widening of the genetic basis in the elite durum wheat germplasm in THEORETICAL AND APPLIED GENETICS
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    http://scigraph.springernature.com/pub.10.1007/s00122-004-1645-5

    DOI

    http://dx.doi.org/10.1007/s00122-004-1645-5

    DIMENSIONS

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    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/15085263


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