Genome and species relationships in genus Avena based on RAPD and AFLP molecular markers View Full Text


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Article Info

DATE

2004-06

AUTHORS

A. Drossou, A. Katsiotis, J. M. Leggett, M. Loukas, S. Tsakas

ABSTRACT

Species and genome relationships among 11 diploid (A and C genomes), five tetraploid (AB and AC genomes) and two hexaploid (ACD genome) Avena taxa were investigated using amplified fragment length polymorphisms (AFLPs) and random amplified polymorphic DNA (RAPD) markers. The two primer pairs used for the AFLP reactions produced a total of 354 polymorphic bands, while 187 reproducible bands were generated using ten RAPD primers. Genetic similarities amongst the entries were estimated using the Jaccard and Dice algorithms, and cluster analyses were performed using UPGMA and neighbor joining methods. Principle coordinate analysis was also applied. The highest cophenetic correlation coefficient was obtained for the Jaccard algorithm and UPGMA clustering method ( r=0.99 for AFLP and r=0.94 for RAPD). No major clustering differences were present between phenograms produced with AFLPs and RAPDs. Furthermore, data produced with AFLPs and RAPDs were highly correlated ( r=0.92), indicating the reliability of our results. All A genome diploid taxa are clustered together according to their karyotype. The AB genome tetraploids were found to form a subcluster within the A(s )genome diploids (AFLPs), indicating their near-autoploid origin. The AC genome tetraploids are clustered to the ACD genome hexaploids. Finally, the C genome diploids form an outer branch, indicating the major genomic divergence between the A and C genomes in Avena. More... »

PAGES

48-54

References to SciGraph publications

  • 2000-12. The development of oat microsatellite markers and their use in identifying relationships among Avena species and oat cultivars in THEORETICAL AND APPLIED GENETICS
  • 1995-11. Endosperm Balance Number and the polar-nuclei activation hypotheses for endosperm development in interspecific crosses of Solanaceae and Gramineae, respectively in THEORETICAL AND APPLIED GENETICS
  • 1989-05. Studies of isozymes in oat species in THEORETICAL AND APPLIED GENETICS
  • 2003-07. Genetic relationships among species and cultivars of Pistacia using RAPDs and AFLPs in EUPHYTICA
  • 1990-01. A repeated sequence probe for the C genome in Avena (Oats) in THEORETICAL AND APPLIED GENETICS
  • 1984-06. Interspecific cross-incompatibility system in the genusAvena in JOURNAL OF PLANT RESEARCH
  • 1998-06. A new species of Avena from Sicily, possibly the tetraploid progenitor of hexaploid oats in GENETIC RESOURCES AND CROP EVOLUTION
  • 1994-03. Intergenomic translocations and the genomic composition of Avena maroccana Gdgr. revealed by FISH in CHROMOSOME RESEARCH
  • 2001-12. Discrimination of the closely related A and B genomes in AABB tetraploid species of Avena in THEORETICAL AND APPLIED GENETICS
  • 2001-05. Morphological and molecular phylogeny of Pistacia species in Turkey in THEORETICAL AND APPLIED GENETICS
  • 1992-03. Organization of repeated sequences in species of the genus Avena in THEORETICAL AND APPLIED GENETICS
  • 1998. Contributions of PCR-Based Methods to Plant Systematics and Evolutionary Biology in MOLECULAR SYSTEMATICS OF PLANTS II
  • 1988-05. Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs) in THEORETICAL AND APPLIED GENETICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s00122-004-1615-y

    DOI

    http://dx.doi.org/10.1007/s00122-004-1615-y

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1041329162

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/15014877


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