A new integrated genetic linkage map of the soybean View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2004-06

AUTHORS

Q. J. Song, L. F. Marek, R. C. Shoemaker, K. G. Lark, V. C. Concibido, X. Delannay, J. E. Specht, P. B. Cregan

ABSTRACT

A total of 391 simple sequence repeat (SSR) markers designed from genomic DNA libraries, 24 derived from existing GenBank genes or ESTs, and five derived from bacterial artificial chromosome (BAC) end sequences were developed. In contrast to SSRs derived from EST sequences, those derived from genomic libraries were a superior source of polymorphic markers, given that the mean number of tandem repeats in the former was significantly less than that of the latter ( P<0.01). The 420 newly developed SSRs were mapped in one or more of five soybean mapping populations: "Minsoy" x "Noir 1", "Minsoy" x "Archer", "Archer" x "Noir 1", "Clark" x "Harosoy", and A81-356022 x PI468916. The JoinMap software package was used to combine the five maps into an integrated genetic map spanning 2,523.6 cM of Kosambi map distance across 20 linkage groups that contained 1,849 markers, including 1,015 SSRs, 709 RFLPs, 73 RAPDs, 24 classical traits, six AFLPs, ten isozymes, and 12 others. The number of new SSR markers added to each linkage group ranged from 12 to 29. In the integrated map, the ratio of SSR marker number to linkage group map distance did not differ among 18 of the 20 linkage groups; however, the SSRs were not uniformly spaced over a linkage group, clusters of SSRs with very limited recombination were frequently present. These clusters of SSRs may be indicative of gene-rich regions of soybean, as has been suggested by a number of recent studies, indicating the significant association of genes and SSRs. Development of SSR markers from map-referenced BAC clones was a very effective means of targeting markers to marker-scarce positions in the genome. More... »

PAGES

122-128

References to SciGraph publications

  • 2003-02. Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.) in THEORETICAL AND APPLIED GENETICS
  • 2002-02. Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes in NATURE GENETICS
  • 1997-02. Use of short microsatellites from database sequences to generate polymorphisms among Lycopersicon esculentum cultivars and accessions of other Lycopersicon species in THEORETICAL AND APPLIED GENETICS
  • 1999-05. Targeted isolation of simple sequence repeat markers through the use of bacterial artificial chromosomes in THEORETICAL AND APPLIED GENETICS
  • 2002-02. Isolation of EST-derived microsatellite markers for genotyping the A and B genomes of wheat in THEORETICAL AND APPLIED GENETICS
  • 1996-01. Characterization and genetic mapping of simple repeat sequences in the tomato genome in MOLECULAR GENETICS AND GENOMICS
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  • 1999-05. A radiation hybrid map of the rat genome containing 5,255 markers in NATURE GENETICS
  • 2001-12. Generation and Comparison of EST‐Derived SSRs and SNPs in Barley (Hordeum Vulgare L.) in HEREDITAS
  • 2002-02. Comparative analysis of polymorphism and chromosomal location of tomato microsatellite markers isolated from different sources in THEORETICAL AND APPLIED GENETICS
  • 1994-11. Hypomethylated sequences: Characterization of the duplicate soybean genome in MOLECULAR GENETICS AND GENOMICS
  • 2000-03. Analysis of SSRs derived from grape ESTs in THEORETICAL AND APPLIED GENETICS
  • 2000-03. Diversity of microsatellites derived from genomic libraries and GenBank sequences in rice (Oryza sativa L.) in THEORETICAL AND APPLIED GENETICS
  • Journal

    TITLE

    Theoretical and Applied Genetics

    ISSUE

    1

    VOLUME

    109

    Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s00122-004-1602-3

    DOI

    http://dx.doi.org/10.1007/s00122-004-1602-3

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1010747569

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/14991109


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