Identification of neuraminidase inhibitors by structure-based screening: promising new leads for influenza View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2014-06

AUTHORS

Soumendranath Bhakat, Faraz Shaikh, Siddharth Yadav, Rakesh M. Rawal

ABSTRACT

Human influenza commonly known as seasonal flu which is caused by a RNA virus has been emerging as a major viral infection over the years. Virus neuraminidase inhibitors and M2 protein inhibitors are the agents which have been used to treat this viral infection. Among these two, viral neuraminidases named oseltamivir and zanamivir are most widely used as antiviral agents to treat influenza. But the recent emergence of resistance strains in the treatment with both zanamivir and oseltamivir creates a big problem to treat this viral infection effectively. In this study, we have designed 68 new human influenza virus neuraminidase inhibitors and reported them as new potential antiviral agents against the complex structure of influenza virus neuraminidase and sialic acid using various in silico tools and molecular docking analysis taking zanamivir as prototype. More... »

PAGES

2803-2809

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s00044-013-0862-3

DOI

http://dx.doi.org/10.1007/s00044-013-0862-3

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1048652126


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/1108", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Medical Microbiology", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/11", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Medical and Health Sciences", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "name": [
            "Department of Pharmaceutical Sciences, Birla Institute of Technology, 835215, Mesra, India"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Bhakat", 
        "givenName": "Soumendranath", 
        "id": "sg:person.01106102440.27", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01106102440.27"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Saurashtra University", 
          "id": "https://www.grid.ac/institutes/grid.412428.9", 
          "name": [
            "Departments of Chemistry, Saurashtra University, Rajkot, India"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Shaikh", 
        "givenName": "Faraz", 
        "id": "sg:person.01230434535.26", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01230434535.26"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Amity University", 
          "id": "https://www.grid.ac/institutes/grid.444644.2", 
          "name": [
            "Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh, India"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Yadav", 
        "givenName": "Siddharth", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Gujarat Cancer & Research Institute", 
          "id": "https://www.grid.ac/institutes/grid.418345.f", 
          "name": [
            "Department of Cancer Biology, The Gujarat Cancer & Research Institute, Ahmedabad, India"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Rawal", 
        "givenName": "Rakesh M.", 
        "id": "sg:person.016041653217.97", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016041653217.97"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1038/nature06956", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1001111775", 
          "https://doi.org/10.1038/nature06956"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/978-3-540-79086-0_5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1006201675", 
          "https://doi.org/10.1007/978-3-540-79086-0_5"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/978-3-540-79086-0_5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1006201675", 
          "https://doi.org/10.1007/978-3-540-79086-0_5"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0027-5107(00)00064-6", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1010738994"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.antiviral.2009.01.006", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022800516"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.jcv.2008.04.001", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028312086"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/jvi.00959-08", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1037801587"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/prot.340140302", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1038541696"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/prot.340140302", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1038541696"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3109/03602537608995839", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044991787"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/jvi.01200-09", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048684393"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00044-010-9398-y", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049789236", 
          "https://doi.org/10.1007/s00044-010-9398-y"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/jvi.00079-08", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1053559934"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/jm00017a005", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055932696"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/jm051197e", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055950020"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/jm051197e", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055950020"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2210/rcsb_pdb/mom_2009_5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1069296261"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1077686074", 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2014-06", 
    "datePublishedReg": "2014-06-01", 
    "description": "Human influenza commonly known as seasonal flu which is caused by a RNA virus has been emerging as a major viral infection over the years. Virus neuraminidase inhibitors and M2 protein inhibitors are the agents which have been used to treat this viral infection. Among these two, viral neuraminidases named oseltamivir and zanamivir are most widely used as antiviral agents to treat influenza. But the recent emergence of resistance strains in the treatment with both zanamivir and oseltamivir creates a big problem to treat this viral infection effectively. In this study, we have designed 68 new human influenza virus neuraminidase inhibitors and reported them as new potential antiviral agents against the complex structure of influenza virus neuraminidase and sialic acid using various in silico tools and molecular docking analysis taking zanamivir as prototype.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1007/s00044-013-0862-3", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1102690", 
        "issn": [
          "1054-2523", 
          "1554-8120"
        ], 
        "name": "Medicinal Chemistry Research", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "6", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "23"
      }
    ], 
    "name": "Identification of neuraminidase inhibitors by structure-based screening: promising new leads for influenza", 
    "pagination": "2803-2809", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "e7c53f6b8d3859a217ef5b2109259436ff1d4ffc026f04258f46630b58c8f327"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/s00044-013-0862-3"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1048652126"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/s00044-013-0862-3", 
      "https://app.dimensions.ai/details/publication/pub.1048652126"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T23:23", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8693_00000508.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://link.springer.com/10.1007%2Fs00044-013-0862-3"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00044-013-0862-3'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00044-013-0862-3'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00044-013-0862-3'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00044-013-0862-3'


 

This table displays all metadata directly associated to this object as RDF triples.

136 TRIPLES      21 PREDICATES      42 URIs      19 LITERALS      7 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/s00044-013-0862-3 schema:about anzsrc-for:11
2 anzsrc-for:1108
3 schema:author Nf5f58868b71c4efea7f8641098bca89f
4 schema:citation sg:pub.10.1007/978-3-540-79086-0_5
5 sg:pub.10.1007/s00044-010-9398-y
6 sg:pub.10.1038/nature06956
7 https://app.dimensions.ai/details/publication/pub.1077686074
8 https://doi.org/10.1002/prot.340140302
9 https://doi.org/10.1016/j.antiviral.2009.01.006
10 https://doi.org/10.1016/j.jcv.2008.04.001
11 https://doi.org/10.1016/s0027-5107(00)00064-6
12 https://doi.org/10.1021/jm00017a005
13 https://doi.org/10.1021/jm051197e
14 https://doi.org/10.1128/jvi.00079-08
15 https://doi.org/10.1128/jvi.00959-08
16 https://doi.org/10.1128/jvi.01200-09
17 https://doi.org/10.2210/rcsb_pdb/mom_2009_5
18 https://doi.org/10.3109/03602537608995839
19 schema:datePublished 2014-06
20 schema:datePublishedReg 2014-06-01
21 schema:description Human influenza commonly known as seasonal flu which is caused by a RNA virus has been emerging as a major viral infection over the years. Virus neuraminidase inhibitors and M2 protein inhibitors are the agents which have been used to treat this viral infection. Among these two, viral neuraminidases named oseltamivir and zanamivir are most widely used as antiviral agents to treat influenza. But the recent emergence of resistance strains in the treatment with both zanamivir and oseltamivir creates a big problem to treat this viral infection effectively. In this study, we have designed 68 new human influenza virus neuraminidase inhibitors and reported them as new potential antiviral agents against the complex structure of influenza virus neuraminidase and sialic acid using various in silico tools and molecular docking analysis taking zanamivir as prototype.
22 schema:genre research_article
23 schema:inLanguage en
24 schema:isAccessibleForFree false
25 schema:isPartOf N5b73de6c204a41d79e01c490b6f48015
26 N68577cc76eb04961950e7baea8ad24d8
27 sg:journal.1102690
28 schema:name Identification of neuraminidase inhibitors by structure-based screening: promising new leads for influenza
29 schema:pagination 2803-2809
30 schema:productId N074b24871eac45efa827a70f79fc25f1
31 N33a8b8e552af4fcf943574193e09a4d4
32 N80d8b7ef4bae49dcb175698b4db0ac48
33 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048652126
34 https://doi.org/10.1007/s00044-013-0862-3
35 schema:sdDatePublished 2019-04-10T23:23
36 schema:sdLicense https://scigraph.springernature.com/explorer/license/
37 schema:sdPublisher Ne6fec149d6b64e0f995571bff05fbb9d
38 schema:url http://link.springer.com/10.1007%2Fs00044-013-0862-3
39 sgo:license sg:explorer/license/
40 sgo:sdDataset articles
41 rdf:type schema:ScholarlyArticle
42 N074b24871eac45efa827a70f79fc25f1 schema:name dimensions_id
43 schema:value pub.1048652126
44 rdf:type schema:PropertyValue
45 N0d89d7eb56534a07b2837f0ae21f341d schema:name Department of Pharmaceutical Sciences, Birla Institute of Technology, 835215, Mesra, India
46 rdf:type schema:Organization
47 N2baf361f48244911ad7f531a0cb6336c schema:affiliation https://www.grid.ac/institutes/grid.444644.2
48 schema:familyName Yadav
49 schema:givenName Siddharth
50 rdf:type schema:Person
51 N33a8b8e552af4fcf943574193e09a4d4 schema:name readcube_id
52 schema:value e7c53f6b8d3859a217ef5b2109259436ff1d4ffc026f04258f46630b58c8f327
53 rdf:type schema:PropertyValue
54 N5b73de6c204a41d79e01c490b6f48015 schema:issueNumber 6
55 rdf:type schema:PublicationIssue
56 N68577cc76eb04961950e7baea8ad24d8 schema:volumeNumber 23
57 rdf:type schema:PublicationVolume
58 N80d8b7ef4bae49dcb175698b4db0ac48 schema:name doi
59 schema:value 10.1007/s00044-013-0862-3
60 rdf:type schema:PropertyValue
61 Nc0a2054f65ff4592ab95eedc8028f2e4 rdf:first sg:person.016041653217.97
62 rdf:rest rdf:nil
63 Nd2d1b53f61d44f6dbf7a0a427730d841 rdf:first N2baf361f48244911ad7f531a0cb6336c
64 rdf:rest Nc0a2054f65ff4592ab95eedc8028f2e4
65 Ne6fec149d6b64e0f995571bff05fbb9d schema:name Springer Nature - SN SciGraph project
66 rdf:type schema:Organization
67 Nf5f58868b71c4efea7f8641098bca89f rdf:first sg:person.01106102440.27
68 rdf:rest Nf80f514a47564bef8f699d7aa5951607
69 Nf80f514a47564bef8f699d7aa5951607 rdf:first sg:person.01230434535.26
70 rdf:rest Nd2d1b53f61d44f6dbf7a0a427730d841
71 anzsrc-for:11 schema:inDefinedTermSet anzsrc-for:
72 schema:name Medical and Health Sciences
73 rdf:type schema:DefinedTerm
74 anzsrc-for:1108 schema:inDefinedTermSet anzsrc-for:
75 schema:name Medical Microbiology
76 rdf:type schema:DefinedTerm
77 sg:journal.1102690 schema:issn 1054-2523
78 1554-8120
79 schema:name Medicinal Chemistry Research
80 rdf:type schema:Periodical
81 sg:person.01106102440.27 schema:affiliation N0d89d7eb56534a07b2837f0ae21f341d
82 schema:familyName Bhakat
83 schema:givenName Soumendranath
84 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01106102440.27
85 rdf:type schema:Person
86 sg:person.01230434535.26 schema:affiliation https://www.grid.ac/institutes/grid.412428.9
87 schema:familyName Shaikh
88 schema:givenName Faraz
89 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01230434535.26
90 rdf:type schema:Person
91 sg:person.016041653217.97 schema:affiliation https://www.grid.ac/institutes/grid.418345.f
92 schema:familyName Rawal
93 schema:givenName Rakesh M.
94 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016041653217.97
95 rdf:type schema:Person
96 sg:pub.10.1007/978-3-540-79086-0_5 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006201675
97 https://doi.org/10.1007/978-3-540-79086-0_5
98 rdf:type schema:CreativeWork
99 sg:pub.10.1007/s00044-010-9398-y schema:sameAs https://app.dimensions.ai/details/publication/pub.1049789236
100 https://doi.org/10.1007/s00044-010-9398-y
101 rdf:type schema:CreativeWork
102 sg:pub.10.1038/nature06956 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001111775
103 https://doi.org/10.1038/nature06956
104 rdf:type schema:CreativeWork
105 https://app.dimensions.ai/details/publication/pub.1077686074 schema:CreativeWork
106 https://doi.org/10.1002/prot.340140302 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038541696
107 rdf:type schema:CreativeWork
108 https://doi.org/10.1016/j.antiviral.2009.01.006 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022800516
109 rdf:type schema:CreativeWork
110 https://doi.org/10.1016/j.jcv.2008.04.001 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028312086
111 rdf:type schema:CreativeWork
112 https://doi.org/10.1016/s0027-5107(00)00064-6 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010738994
113 rdf:type schema:CreativeWork
114 https://doi.org/10.1021/jm00017a005 schema:sameAs https://app.dimensions.ai/details/publication/pub.1055932696
115 rdf:type schema:CreativeWork
116 https://doi.org/10.1021/jm051197e schema:sameAs https://app.dimensions.ai/details/publication/pub.1055950020
117 rdf:type schema:CreativeWork
118 https://doi.org/10.1128/jvi.00079-08 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053559934
119 rdf:type schema:CreativeWork
120 https://doi.org/10.1128/jvi.00959-08 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037801587
121 rdf:type schema:CreativeWork
122 https://doi.org/10.1128/jvi.01200-09 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048684393
123 rdf:type schema:CreativeWork
124 https://doi.org/10.2210/rcsb_pdb/mom_2009_5 schema:sameAs https://app.dimensions.ai/details/publication/pub.1069296261
125 rdf:type schema:CreativeWork
126 https://doi.org/10.3109/03602537608995839 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044991787
127 rdf:type schema:CreativeWork
128 https://www.grid.ac/institutes/grid.412428.9 schema:alternateName Saurashtra University
129 schema:name Departments of Chemistry, Saurashtra University, Rajkot, India
130 rdf:type schema:Organization
131 https://www.grid.ac/institutes/grid.418345.f schema:alternateName Gujarat Cancer & Research Institute
132 schema:name Department of Cancer Biology, The Gujarat Cancer & Research Institute, Ahmedabad, India
133 rdf:type schema:Organization
134 https://www.grid.ac/institutes/grid.444644.2 schema:alternateName Amity University
135 schema:name Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh, India
136 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...