The encyclopedia of life project: Grid software and deployment View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2004-06

AUTHORS

Wilfred W. Li, Robert W. Byrnes, Jim Hayes, Adam Birnbaum, Vicente M. Reyes, Atif Shahab, Coleman Mosley, Dmitry Pekurovsky, Greg B. Quinn, Ilya N. Shindyalov, Henri Casanova, Larry Ang, Fran Berman, Peter W. Arzberger, Mark A. Miller, Philip E. Bourne

ABSTRACT

The ongoing global effort of genome sequencing is making large scale comparative proteomic analysis an intriguing task. The Encyclopedia of Life (EOL; http://eol.sdsc.edu) project aims to provide current functional and structural annotations for all available proteomes, a computational challenge never seen before in biology. Using an integrative genome annotation pipeline (iGAP), we have produced 3D models and functional annotations for more than 100 proteomes thus far. This process is greatly facilitated by grid compute resources, and especially by the development of grid application execution environment. AppLeS (Application-Level Scheduling) Parameter Sweep Template (APST) has been adopted by the EOL project as a mediator to grid middleware. APST has made the annotation process much more efficient, highly automated and scalable. Currently we are building a domain-specific bioinformatics workflow management system (BWMS) on top of APST, which further streamlines grid deployment of life science applications. With these developments in mind, we discuss some common problems and expectations of grid computing for high throughput proteomics. More... »

PAGES

127-136

References to SciGraph publications

  • 1998. A resource management architecture for metacomputing systems in JOB SCHEDULING STRATEGIES FOR PARALLEL PROCESSING
  • 2003-07-28. A comparative proteomics resource: proteins of Arabidopsis thaliana in GENOME BIOLOGY
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/bf03040951

    DOI

    http://dx.doi.org/10.1007/bf03040951

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1024866558


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "about": [
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/08", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Information and Computing Sciences", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0801", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Artificial Intelligence and Image Processing", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0803", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Computer Software", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0806", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Information Systems", 
            "type": "DefinedTerm"
          }
        ], 
        "author": [
          {
            "affiliation": {
              "alternateName": "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
              "id": "http://www.grid.ac/institutes/grid.266100.3", 
              "name": [
                "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Li", 
            "givenName": "Wilfred W.", 
            "id": "sg:person.0620700060.52", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0620700060.52"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
              "id": "http://www.grid.ac/institutes/grid.266100.3", 
              "name": [
                "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Byrnes", 
            "givenName": "Robert W.", 
            "id": "sg:person.011440351671.01", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011440351671.01"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Department of Computer Science and Engineering, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
              "id": "http://www.grid.ac/institutes/grid.266100.3", 
              "name": [
                "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
                "Department of Computer Science and Engineering, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Hayes", 
            "givenName": "Jim", 
            "id": "sg:person.011027434775.35", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011027434775.35"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
              "id": "http://www.grid.ac/institutes/grid.266100.3", 
              "name": [
                "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Birnbaum", 
            "givenName": "Adam", 
            "id": "sg:person.012250645735.66", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012250645735.66"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
              "id": "http://www.grid.ac/institutes/grid.266100.3", 
              "name": [
                "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Reyes", 
            "givenName": "Vicente M.", 
            "id": "sg:person.01332526224.88", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01332526224.88"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Bioinformatics Institute, 21 Heng Mui Keng Terrace I2R, Level 3, 119612, Singapore", 
              "id": "http://www.grid.ac/institutes/grid.418325.9", 
              "name": [
                "Bioinformatics Institute, 21 Heng Mui Keng Terrace I2R, Level 3, 119612, Singapore"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Shahab", 
            "givenName": "Atif", 
            "id": "sg:person.01312607452.13", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01312607452.13"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
              "id": "http://www.grid.ac/institutes/grid.266100.3", 
              "name": [
                "Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Mosley", 
            "givenName": "Coleman", 
            "id": "sg:person.0675525775.06", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0675525775.06"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
              "id": "http://www.grid.ac/institutes/grid.266100.3", 
              "name": [
                "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Pekurovsky", 
            "givenName": "Dmitry", 
            "id": "sg:person.0677727200.22", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0677727200.22"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
              "id": "http://www.grid.ac/institutes/grid.266100.3", 
              "name": [
                "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Quinn", 
            "givenName": "Greg B.", 
            "id": "sg:person.01336320173.53", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01336320173.53"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
              "id": "http://www.grid.ac/institutes/grid.266100.3", 
              "name": [
                "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Shindyalov", 
            "givenName": "Ilya N.", 
            "id": "sg:person.0746413077.67", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0746413077.67"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Department of Computer Science and Engineering, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
              "id": "http://www.grid.ac/institutes/grid.266100.3", 
              "name": [
                "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
                "Department of Computer Science and Engineering, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Casanova", 
            "givenName": "Henri", 
            "id": "sg:person.012376011235.95", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012376011235.95"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Bioinformatics Institute, 21 Heng Mui Keng Terrace I2R, Level 3, 119612, Singapore", 
              "id": "http://www.grid.ac/institutes/grid.418325.9", 
              "name": [
                "Bioinformatics Institute, 21 Heng Mui Keng Terrace I2R, Level 3, 119612, Singapore"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Ang", 
            "givenName": "Larry", 
            "id": "sg:person.013556020273.07", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013556020273.07"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Department of Computer Science and Engineering, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
              "id": "http://www.grid.ac/institutes/grid.266100.3", 
              "name": [
                "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
                "Department of Computer Science and Engineering, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Berman", 
            "givenName": "Fran", 
            "id": "sg:person.011270563230.60", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011270563230.60"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
              "id": "http://www.grid.ac/institutes/grid.266100.3", 
              "name": [
                "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Arzberger", 
            "givenName": "Peter W.", 
            "id": "sg:person.0757743071.31", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0757743071.31"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
              "id": "http://www.grid.ac/institutes/grid.266100.3", 
              "name": [
                "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Miller", 
            "givenName": "Mark A.", 
            "id": "sg:person.01165006066.10", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01165006066.10"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Department of Pharmacology, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
              "id": "http://www.grid.ac/institutes/grid.266100.3", 
              "name": [
                "Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
                "Department of Pharmacology, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Bourne", 
            "givenName": "Philip E.", 
            "id": "sg:person.01203131650.82", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01203131650.82"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "sg:pub.10.1186/gb-2003-4-8-r51", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1005926188", 
              "https://doi.org/10.1186/gb-2003-4-8-r51"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bfb0053981", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028049057", 
              "https://doi.org/10.1007/bfb0053981"
            ], 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2004-06", 
        "datePublishedReg": "2004-06-01", 
        "description": "The ongoing global effort of genome sequencing is making large scale comparative proteomic analysis an intriguing task. The Encyclopedia of Life (EOL; http://eol.sdsc.edu) project aims to provide current functional and structural annotations for all available proteomes, a computational challenge never seen before in biology. Using an integrative genome annotation pipeline (iGAP), we have produced 3D models and functional annotations for more than 100 proteomes thus far. This process is greatly facilitated by grid compute resources, and especially by the development of grid application execution environment. AppLeS (Application-Level Scheduling) Parameter Sweep Template (APST) has been adopted by the EOL project as a mediator to grid middleware. APST has made the annotation process much more efficient, highly automated and scalable. Currently we are building a domain-specific bioinformatics workflow management system (BWMS) on top of APST, which further streamlines grid deployment of life science applications. With these developments in mind, we discuss some common problems and expectations of grid computing for high throughput proteomics.", 
        "genre": "article", 
        "id": "sg:pub.10.1007/bf03040951", 
        "inLanguage": "en", 
        "isAccessibleForFree": false, 
        "isPartOf": [
          {
            "id": "sg:journal.1053619", 
            "issn": [
              "0288-3635", 
              "1882-7055"
            ], 
            "name": "New Generation Computing", 
            "publisher": "Springer Nature", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "2", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "22"
          }
        ], 
        "keywords": [
          "application execution environment", 
          "grid compute resources", 
          "Grid middleware", 
          "grid computing", 
          "execution environment", 
          "Grid software", 
          "compute resources", 
          "annotation process", 
          "grid deployment", 
          "computational challenges", 
          "management system", 
          "science applications", 
          "Genome Annotation Pipeline", 
          "intriguing task", 
          "life science applications", 
          "annotation pipeline", 
          "annotation", 
          "deployment", 
          "EOL projects", 
          "middleware", 
          "computing", 
          "high throughput proteomics", 
          "structural annotation", 
          "available proteomes", 
          "software", 
          "project", 
          "throughput proteomics", 
          "bioinformatics", 
          "task", 
          "common problem", 
          "pipeline", 
          "environment", 
          "functional annotation", 
          "resources", 
          "applications", 
          "challenges", 
          "system", 
          "life projects", 
          "process", 
          "top", 
          "template", 
          "Encyclopedia", 
          "efforts", 
          "model", 
          "development", 
          "mind", 
          "ongoing global efforts", 
          "expectations", 
          "analysis", 
          "biology", 
          "comparative proteomic analysis", 
          "global efforts", 
          "genome sequencing", 
          "proteomics", 
          "proteomic analysis", 
          "proteome", 
          "sequencing", 
          "mediators", 
          "problem", 
          "large scale comparative proteomic analysis", 
          "scale comparative proteomic analysis", 
          "integrative genome annotation pipeline", 
          "grid application execution environment", 
          "APST", 
          "Parameter Sweep Template", 
          "Sweep Template", 
          "domain-specific bioinformatics", 
          "top of APST", 
          "further streamlines grid deployment", 
          "streamlines grid deployment"
        ], 
        "name": "The encyclopedia of life project: Grid software and deployment", 
        "pagination": "127-136", 
        "productId": [
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1024866558"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1007/bf03040951"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1007/bf03040951", 
          "https://app.dimensions.ai/details/publication/pub.1024866558"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2022-01-01T18:13", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-springernature-scigraph/baseset/20220101/entities/gbq_results/article/article_381.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "https://doi.org/10.1007/bf03040951"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/bf03040951'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/bf03040951'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/bf03040951'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/bf03040951'


     

    This table displays all metadata directly associated to this object as RDF triples.

    258 TRIPLES      22 PREDICATES      100 URIs      88 LITERALS      6 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1007/bf03040951 schema:about anzsrc-for:08
    2 anzsrc-for:0801
    3 anzsrc-for:0803
    4 anzsrc-for:0806
    5 schema:author Nef7f0c564d2043c3a5d19b05ca9941a6
    6 schema:citation sg:pub.10.1007/bfb0053981
    7 sg:pub.10.1186/gb-2003-4-8-r51
    8 schema:datePublished 2004-06
    9 schema:datePublishedReg 2004-06-01
    10 schema:description The ongoing global effort of genome sequencing is making large scale comparative proteomic analysis an intriguing task. The Encyclopedia of Life (EOL; http://eol.sdsc.edu) project aims to provide current functional and structural annotations for all available proteomes, a computational challenge never seen before in biology. Using an integrative genome annotation pipeline (iGAP), we have produced 3D models and functional annotations for more than 100 proteomes thus far. This process is greatly facilitated by grid compute resources, and especially by the development of grid application execution environment. AppLeS (Application-Level Scheduling) Parameter Sweep Template (APST) has been adopted by the EOL project as a mediator to grid middleware. APST has made the annotation process much more efficient, highly automated and scalable. Currently we are building a domain-specific bioinformatics workflow management system (BWMS) on top of APST, which further streamlines grid deployment of life science applications. With these developments in mind, we discuss some common problems and expectations of grid computing for high throughput proteomics.
    11 schema:genre article
    12 schema:inLanguage en
    13 schema:isAccessibleForFree false
    14 schema:isPartOf N8ce9671fd03c44a8be7cf509fe2006b9
    15 Na8a088ff4b6743bc8eae919df34e1d8d
    16 sg:journal.1053619
    17 schema:keywords APST
    18 EOL projects
    19 Encyclopedia
    20 Genome Annotation Pipeline
    21 Grid middleware
    22 Grid software
    23 Parameter Sweep Template
    24 Sweep Template
    25 analysis
    26 annotation
    27 annotation pipeline
    28 annotation process
    29 application execution environment
    30 applications
    31 available proteomes
    32 bioinformatics
    33 biology
    34 challenges
    35 common problem
    36 comparative proteomic analysis
    37 computational challenges
    38 compute resources
    39 computing
    40 deployment
    41 development
    42 domain-specific bioinformatics
    43 efforts
    44 environment
    45 execution environment
    46 expectations
    47 functional annotation
    48 further streamlines grid deployment
    49 genome sequencing
    50 global efforts
    51 grid application execution environment
    52 grid compute resources
    53 grid computing
    54 grid deployment
    55 high throughput proteomics
    56 integrative genome annotation pipeline
    57 intriguing task
    58 large scale comparative proteomic analysis
    59 life projects
    60 life science applications
    61 management system
    62 mediators
    63 middleware
    64 mind
    65 model
    66 ongoing global efforts
    67 pipeline
    68 problem
    69 process
    70 project
    71 proteome
    72 proteomic analysis
    73 proteomics
    74 resources
    75 scale comparative proteomic analysis
    76 science applications
    77 sequencing
    78 software
    79 streamlines grid deployment
    80 structural annotation
    81 system
    82 task
    83 template
    84 throughput proteomics
    85 top
    86 top of APST
    87 schema:name The encyclopedia of life project: Grid software and deployment
    88 schema:pagination 127-136
    89 schema:productId N5f6a7f831de4438887bb2d3152602b8d
    90 Naadb028342df4872b9d70a02c143bb04
    91 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024866558
    92 https://doi.org/10.1007/bf03040951
    93 schema:sdDatePublished 2022-01-01T18:13
    94 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    95 schema:sdPublisher Nc38c3a9e1f474f1db1c077ab35739eac
    96 schema:url https://doi.org/10.1007/bf03040951
    97 sgo:license sg:explorer/license/
    98 sgo:sdDataset articles
    99 rdf:type schema:ScholarlyArticle
    100 N01e56c231dbd49cdb2c1dba014304925 rdf:first sg:person.01332526224.88
    101 rdf:rest Nf019579e9a8d43e39b132a11ff4eaec6
    102 N21824b85dc9c416ba8e84e9b50770dad rdf:first sg:person.01165006066.10
    103 rdf:rest N53e4852f77dd4b35b52e8532ffd99ce2
    104 N3c75d7b85c5e421ab233007becbd0f71 rdf:first sg:person.013556020273.07
    105 rdf:rest N5677f23553224639867deee3a26ff774
    106 N53e4852f77dd4b35b52e8532ffd99ce2 rdf:first sg:person.01203131650.82
    107 rdf:rest rdf:nil
    108 N5677f23553224639867deee3a26ff774 rdf:first sg:person.011270563230.60
    109 rdf:rest Ndfe5a1b2ae6846a89847d43a6ccaa74e
    110 N5f6a7f831de4438887bb2d3152602b8d schema:name doi
    111 schema:value 10.1007/bf03040951
    112 rdf:type schema:PropertyValue
    113 N83779310b44b4772a0f2d652d1b98ccf rdf:first sg:person.0746413077.67
    114 rdf:rest Ne444fcbcda3f4626aa108d395f03032f
    115 N8ce9671fd03c44a8be7cf509fe2006b9 schema:volumeNumber 22
    116 rdf:type schema:PublicationVolume
    117 N8df53ce423a240a8a158a76ec5894cfb rdf:first sg:person.011440351671.01
    118 rdf:rest Nb113db37378d4763a9daf31b93acb24d
    119 Na8a088ff4b6743bc8eae919df34e1d8d schema:issueNumber 2
    120 rdf:type schema:PublicationIssue
    121 Naadb028342df4872b9d70a02c143bb04 schema:name dimensions_id
    122 schema:value pub.1024866558
    123 rdf:type schema:PropertyValue
    124 Nb113db37378d4763a9daf31b93acb24d rdf:first sg:person.011027434775.35
    125 rdf:rest Nb91fab7e985840208563bd1104d2dfcd
    126 Nb63e3c89a3ca409a97c789693101eaae rdf:first sg:person.01336320173.53
    127 rdf:rest N83779310b44b4772a0f2d652d1b98ccf
    128 Nb91fab7e985840208563bd1104d2dfcd rdf:first sg:person.012250645735.66
    129 rdf:rest N01e56c231dbd49cdb2c1dba014304925
    130 Nc38c3a9e1f474f1db1c077ab35739eac schema:name Springer Nature - SN SciGraph project
    131 rdf:type schema:Organization
    132 Nc9ca50aa20da4758b0f961380991aeb0 rdf:first sg:person.0675525775.06
    133 rdf:rest Nd296052b8a224b56a49dea954742c54c
    134 Nd296052b8a224b56a49dea954742c54c rdf:first sg:person.0677727200.22
    135 rdf:rest Nb63e3c89a3ca409a97c789693101eaae
    136 Ndfe5a1b2ae6846a89847d43a6ccaa74e rdf:first sg:person.0757743071.31
    137 rdf:rest N21824b85dc9c416ba8e84e9b50770dad
    138 Ne444fcbcda3f4626aa108d395f03032f rdf:first sg:person.012376011235.95
    139 rdf:rest N3c75d7b85c5e421ab233007becbd0f71
    140 Nef7f0c564d2043c3a5d19b05ca9941a6 rdf:first sg:person.0620700060.52
    141 rdf:rest N8df53ce423a240a8a158a76ec5894cfb
    142 Nf019579e9a8d43e39b132a11ff4eaec6 rdf:first sg:person.01312607452.13
    143 rdf:rest Nc9ca50aa20da4758b0f961380991aeb0
    144 anzsrc-for:08 schema:inDefinedTermSet anzsrc-for:
    145 schema:name Information and Computing Sciences
    146 rdf:type schema:DefinedTerm
    147 anzsrc-for:0801 schema:inDefinedTermSet anzsrc-for:
    148 schema:name Artificial Intelligence and Image Processing
    149 rdf:type schema:DefinedTerm
    150 anzsrc-for:0803 schema:inDefinedTermSet anzsrc-for:
    151 schema:name Computer Software
    152 rdf:type schema:DefinedTerm
    153 anzsrc-for:0806 schema:inDefinedTermSet anzsrc-for:
    154 schema:name Information Systems
    155 rdf:type schema:DefinedTerm
    156 sg:journal.1053619 schema:issn 0288-3635
    157 1882-7055
    158 schema:name New Generation Computing
    159 schema:publisher Springer Nature
    160 rdf:type schema:Periodical
    161 sg:person.011027434775.35 schema:affiliation grid-institutes:grid.266100.3
    162 schema:familyName Hayes
    163 schema:givenName Jim
    164 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011027434775.35
    165 rdf:type schema:Person
    166 sg:person.011270563230.60 schema:affiliation grid-institutes:grid.266100.3
    167 schema:familyName Berman
    168 schema:givenName Fran
    169 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011270563230.60
    170 rdf:type schema:Person
    171 sg:person.011440351671.01 schema:affiliation grid-institutes:grid.266100.3
    172 schema:familyName Byrnes
    173 schema:givenName Robert W.
    174 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011440351671.01
    175 rdf:type schema:Person
    176 sg:person.01165006066.10 schema:affiliation grid-institutes:grid.266100.3
    177 schema:familyName Miller
    178 schema:givenName Mark A.
    179 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01165006066.10
    180 rdf:type schema:Person
    181 sg:person.01203131650.82 schema:affiliation grid-institutes:grid.266100.3
    182 schema:familyName Bourne
    183 schema:givenName Philip E.
    184 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01203131650.82
    185 rdf:type schema:Person
    186 sg:person.012250645735.66 schema:affiliation grid-institutes:grid.266100.3
    187 schema:familyName Birnbaum
    188 schema:givenName Adam
    189 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012250645735.66
    190 rdf:type schema:Person
    191 sg:person.012376011235.95 schema:affiliation grid-institutes:grid.266100.3
    192 schema:familyName Casanova
    193 schema:givenName Henri
    194 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012376011235.95
    195 rdf:type schema:Person
    196 sg:person.01312607452.13 schema:affiliation grid-institutes:grid.418325.9
    197 schema:familyName Shahab
    198 schema:givenName Atif
    199 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01312607452.13
    200 rdf:type schema:Person
    201 sg:person.01332526224.88 schema:affiliation grid-institutes:grid.266100.3
    202 schema:familyName Reyes
    203 schema:givenName Vicente M.
    204 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01332526224.88
    205 rdf:type schema:Person
    206 sg:person.01336320173.53 schema:affiliation grid-institutes:grid.266100.3
    207 schema:familyName Quinn
    208 schema:givenName Greg B.
    209 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01336320173.53
    210 rdf:type schema:Person
    211 sg:person.013556020273.07 schema:affiliation grid-institutes:grid.418325.9
    212 schema:familyName Ang
    213 schema:givenName Larry
    214 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013556020273.07
    215 rdf:type schema:Person
    216 sg:person.0620700060.52 schema:affiliation grid-institutes:grid.266100.3
    217 schema:familyName Li
    218 schema:givenName Wilfred W.
    219 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0620700060.52
    220 rdf:type schema:Person
    221 sg:person.0675525775.06 schema:affiliation grid-institutes:grid.266100.3
    222 schema:familyName Mosley
    223 schema:givenName Coleman
    224 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0675525775.06
    225 rdf:type schema:Person
    226 sg:person.0677727200.22 schema:affiliation grid-institutes:grid.266100.3
    227 schema:familyName Pekurovsky
    228 schema:givenName Dmitry
    229 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0677727200.22
    230 rdf:type schema:Person
    231 sg:person.0746413077.67 schema:affiliation grid-institutes:grid.266100.3
    232 schema:familyName Shindyalov
    233 schema:givenName Ilya N.
    234 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0746413077.67
    235 rdf:type schema:Person
    236 sg:person.0757743071.31 schema:affiliation grid-institutes:grid.266100.3
    237 schema:familyName Arzberger
    238 schema:givenName Peter W.
    239 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0757743071.31
    240 rdf:type schema:Person
    241 sg:pub.10.1007/bfb0053981 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028049057
    242 https://doi.org/10.1007/bfb0053981
    243 rdf:type schema:CreativeWork
    244 sg:pub.10.1186/gb-2003-4-8-r51 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005926188
    245 https://doi.org/10.1186/gb-2003-4-8-r51
    246 rdf:type schema:CreativeWork
    247 grid-institutes:grid.266100.3 schema:alternateName Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA
    248 Department of Computer Science and Engineering, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA
    249 Department of Pharmacology, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA
    250 Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA
    251 schema:name Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA
    252 Department of Computer Science and Engineering, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA
    253 Department of Pharmacology, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA
    254 Integrative Biosciences Program San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA
    255 rdf:type schema:Organization
    256 grid-institutes:grid.418325.9 schema:alternateName Bioinformatics Institute, 21 Heng Mui Keng Terrace I2R, Level 3, 119612, Singapore
    257 schema:name Bioinformatics Institute, 21 Heng Mui Keng Terrace I2R, Level 3, 119612, Singapore
    258 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...