Ontology type: schema:ScholarlyArticle
1989-05
AUTHORS ABSTRACTAnalysis of the rate of nucleotide substitution at silent sites inDrosophila genes reveals three main points. First, the silent rate varies (by a factor of two) among nuclear genes; it is inversely related to the degree of codon usage bias, and so selection among synonymous codons appears to constrain the rate of silent substitution in some genes. Second, mitochondrial genes may have evolved only as fast as nuclear genes with weak codon usage bias (and two times faster than nuclear genes with high codon usage bias); this is quite different from the situation in mammals where mitochondrial genes evolve approximately 5–10 times faster than nuclear genes. Third, the absolute rate of substitution at silent sites in nuclear genes inDrosophila is about three times hihger than the average silent rate in mammals. More... »
PAGES398-402
http://scigraph.springernature.com/pub.10.1007/bf02603075
DOIhttp://dx.doi.org/10.1007/bf02603075
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1021987651
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/2501501
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Animals",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Base Sequence",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Codon",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "DNA",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "DNA, Mitochondrial",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Drosophila melanogaster",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genes",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Mammals",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Mutation",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Phylogeny",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Species Specificity",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Time Factors",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Center for Demographic and Population Genetics, University of Texas, PO Box 20334, 77225, Houston, Texas, USA",
"id": "http://www.grid.ac/institutes/grid.267308.8",
"name": [
"Department of Genetics, Trinity College, 2, Dublin, Ireland",
"Center for Demographic and Population Genetics, University of Texas, PO Box 20334, 77225, Houston, Texas, USA"
],
"type": "Organization"
},
"familyName": "Sharp",
"givenName": "Paul M.",
"id": "sg:person.011734705062.72",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011734705062.72"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Center for Demographic and Population Genetics, University of Texas, PO Box 20334, 77225, Houston, Texas, USA",
"id": "http://www.grid.ac/institutes/grid.267308.8",
"name": [
"Center for Demographic and Population Genetics, University of Texas, PO Box 20334, 77225, Houston, Texas, USA"
],
"type": "Organization"
},
"familyName": "Li",
"givenName": "Wen-Hsiung",
"id": "sg:person.0667163425.22",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0667163425.22"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1007/bf02099755",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042904557",
"https://doi.org/10.1007/bf02099755"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/309425a0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008013691",
"https://doi.org/10.1038/309425a0"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf02111289",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052763044",
"https://doi.org/10.1007/bf02111289"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf02603118",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022944083",
"https://doi.org/10.1007/bf02603118"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00328464",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038046602",
"https://doi.org/10.1007/bf00328464"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-1-4615-7145-2_17",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1089760275",
"https://doi.org/10.1007/978-1-4615-7145-2_17"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/304234a0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035740032",
"https://doi.org/10.1038/304234a0"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf02100996",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008311568",
"https://doi.org/10.1007/bf02100996"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/290457a0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038487698",
"https://doi.org/10.1038/290457a0"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf02100622",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013867179",
"https://doi.org/10.1007/bf02100622"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf01734101",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033529186",
"https://doi.org/10.1007/bf01734101"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf02111283",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026736092",
"https://doi.org/10.1007/bf02111283"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/304412a0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010901342",
"https://doi.org/10.1038/304412a0"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf02100076",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048588749",
"https://doi.org/10.1007/bf02100076"
],
"type": "CreativeWork"
}
],
"datePublished": "1989-05",
"datePublishedReg": "1989-05-01",
"description": "Analysis of the rate of nucleotide substitution at silent sites inDrosophila genes reveals three main points. First, the silent rate varies (by a factor of two) among nuclear genes; it is inversely related to the degree of codon usage bias, and so selection among synonymous codons appears to constrain the rate of silent substitution in some genes. Second, mitochondrial genes may have evolved only as fast as nuclear genes with weak codon usage bias (and two times faster than nuclear genes with high codon usage bias); this is quite different from the situation in mammals where mitochondrial genes evolve approximately 5\u201310 times faster than nuclear genes. Third, the absolute rate of substitution at silent sites in nuclear genes inDrosophila is about three times hihger than the average silent rate in mammals.",
"genre": "article",
"id": "sg:pub.10.1007/bf02603075",
"inLanguage": "en",
"isAccessibleForFree": false,
"isFundedItemOf": [
{
"id": "sg:grant.2635155",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.2510077",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1016442",
"issn": [
"0022-2844",
"1432-1432"
],
"name": "Journal of Molecular Evolution",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "5",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "28"
}
],
"keywords": [
"nuclear genes",
"codon usage bias",
"mitochondrial genes",
"usage bias",
"weak codon usage bias",
"silent sites",
"synonymous codons",
"nucleotide substitutions",
"silent rate",
"genes",
"silent substitutions",
"inDrosophila",
"mammals",
"codon",
"substitution",
"absolute rate",
"sites",
"selection",
"rate",
"analysis",
"varies",
"rate varies",
"time",
"degree",
"bias",
"point",
"main points",
"situation"
],
"name": "On the rate of DNA sequence evolution inDrosophila",
"pagination": "398-402",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1021987651"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/bf02603075"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"2501501"
]
}
],
"sameAs": [
"https://doi.org/10.1007/bf02603075",
"https://app.dimensions.ai/details/publication/pub.1021987651"
],
"sdDataset": "articles",
"sdDatePublished": "2022-05-10T09:42",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220509/entities/gbq_results/article/article_213.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1007/bf02603075"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/bf02603075'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/bf02603075'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/bf02603075'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/bf02603075'
This table displays all metadata directly associated to this object as RDF triples.
206 TRIPLES
22 PREDICATES
81 URIs
59 LITERALS
19 BLANK NODES