The complete sequence of the rice (Oryza sativa) chloroplast genome: Intermolecular recombination between distinct tRNA genes accounts for a major ... View Full Text


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Article Info

DATE

1989-06

AUTHORS

Junzou Hiratsuka, Hiroaki Shimada, Robert Whittier, Takashi Ishibashi, Masahiro Sakamoto, Masao Mori, Chihiro Kondo, Yasuko Honji, Chong-Rong Sun, Bing-Yuan Meng, Yu-Qing Li, Akira Kanno, Yoko Nishizawa, Atsushi Hirai, Kazuo Shinozaki, Masahiro Sugiura

ABSTRACT

The entire chloroplast genome of the monocot rice (Oryza sativa) has been sequenced and comprises 134525 bp. Predicted genes have been identified along with open reading frames (ORFs) conserved between rice and the previously sequenced chloroplast genomes, a dicot, tobacco (Nicotiana tabacum), and a liverwort (Marchantia polymorpha). The same complement of 30 tRNA and 4 rRNA genes has been conserved between rice and tobacco. Most ORFs extensively conserved betweenN. tabacum andM. polymorpha are also conserved intact in rice. However, several such ORFs are entirely absent in rice, or present only in severely truncated form. Structural changes are also apparent in the genome relative to tobacco. The inverted repeats, characteristic of chloroplast genome structure, have expanded outward to include several genes present only once per genome in tobacco and liverwort and the large single copy region has undergone a series of inversions which predate the divergence of the cereals. A chimeric tRNA pseudogene overlaps an apparent endpoint of the largest inversion, and a model invoking illegitimate recombination between tRNA genes is proposed which accounts simultaneously for the origin of this pseudogene, the large inversion and the creation of repeated sequences near the inversion endpoints. More... »

PAGES

185-194

References to SciGraph publications

  • 1986-07. Conservation of chloroplast genome structure among vascular plants in CURRENT GENETICS
  • 1983-03. Chloroplast DNAs of Spinacia, Petunia and Spirodela have a similar gene organization in CURRENT GENETICS
  • 1988-08. Ordered processing and splicing in a polycistronic transcript in liverwort chloroplasts in CURRENT GENETICS
  • 1988-08. Rice mitochondrial genome contains a rearranged chloroplast gene cluster in MOLECULAR GENETICS AND GENOMICS
  • 1984-02-01. Isolation, characterization, phosphorylation and site of synthesis of Spinacia chloroplast ribosomal proteins in CURRENT GENETICS
  • 1985-05. Rice chloroplast DNA: a physical map and the location of the genes for the large subunit of ribulose 1,5-bisphosphate carboxylase and the 32 KD photosystem II reaction center protein in THEORETICAL AND APPLIED GENETICS
  • 1988-10. Cotranscription of the genes encoding two P700 chlorophyll a apoproteins with the gene for ribosomal protein CS14: determination of the transcriptional initiation site by in vitro capping in CURRENT GENETICS
  • 1986-09. Structures of tobacco chloroplast genes for tRNAIle (CAU), tRNALeu (CAA), tRNACys (GCA), tRNASer (UGA) and tRNAThr (GGU): a compilation of tRNA genes from tobacco chloroplasts in PLANT MOLECULAR BIOLOGY
  • 1986-07. Structural evolution and flip-flop recombination of chloroplast DNA in the fern genus Osmunda in CURRENT GENETICS
  • 1986-08. Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA in NATURE
  • 1985-02. The endpoints of an inversion in wheat chloroplast DNA are associated with short repeated sequences containing homology toatt-lambda in CURRENT GENETICS
  • 1985-06. Organization and sequence of five tRNA genes and of an unidentified reading frame in the wheat chloroplast genome: evidence for gene rearrangements during the evolution of chloroplast genomes in CURRENT GENETICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/bf02464880

    DOI

    http://dx.doi.org/10.1007/bf02464880

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1004682410

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/2770692


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