The complete sequence of the rice (Oryza sativa) chloroplast genome: Intermolecular recombination between distinct tRNA genes accounts for a major ... View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

1989-06

AUTHORS

Junzou Hiratsuka, Hiroaki Shimada, Robert Whittier, Takashi Ishibashi, Masahiro Sakamoto, Masao Mori, Chihiro Kondo, Yasuko Honji, Chong-Rong Sun, Bing-Yuan Meng, Yu-Qing Li, Akira Kanno, Yoko Nishizawa, Atsushi Hirai, Kazuo Shinozaki, Masahiro Sugiura

ABSTRACT

The entire chloroplast genome of the monocot rice (Oryza sativa) has been sequenced and comprises 134525 bp. Predicted genes have been identified along with open reading frames (ORFs) conserved between rice and the previously sequenced chloroplast genomes, a dicot, tobacco (Nicotiana tabacum), and a liverwort (Marchantia polymorpha). The same complement of 30 tRNA and 4 rRNA genes has been conserved between rice and tobacco. Most ORFs extensively conserved between N. tabacum and M. polymorpha are also conserved intact in rice. However, several such ORFs are entirely absent in rice, or present only in severely truncated form. Structural changes are also apparent in the genome relative to tobacco. The inverted repeats, characteristic of chloroplast genome structure, have expanded outward to include several genes present only once per genome in tobacco and liverwort and the large single copy region has undergone a series of inversions which predate the divergence of the cereals. A chimeric tRNA pseudogene overlaps an apparent endpoint of the largest inversion, and a model invoking illegitimate recombination between tRNA genes is proposed which accounts simultaneously for the origin of this pseudogene, the large inversion and the creation of repeated sequences near the inversion endpoints. More... »

PAGES

185-194

References to SciGraph publications

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/bf02464880

    DOI

    http://dx.doi.org/10.1007/bf02464880

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1004682410

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/2770692


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