On the maximum likelihood method in molecular phylogenetics View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

1991-05

AUTHORS

Masami Hasegawa, Hirohisa Kishino, Naruya Saitou

ABSTRACT

The efficiency of obtaining the correct tree by the maximum likelihood method (Felsenstein 1981) for inferring trees from DNA sequence data was compared with trees obtained by distance methods. It was shown that the maximum likelihood method is superior to distance methods in the efficiency particularly when the evolutionary rate differs among lineages. More... »

PAGES

443-445

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/bf02101285

DOI

http://dx.doi.org/10.1007/bf02101285

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1045563541

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/1904100


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Computer Simulation", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genetic Techniques", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Phylogeny", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Department of Statistical Science, The Graduate University for Advanced Studies, 4-6-7 Minami-Azabu, Minato-ku, 106, Tokyo, Japan", 
          "id": "http://www.grid.ac/institutes/grid.275033.0", 
          "name": [
            "The Institute of Statistical Mathematics, The Graduate University for Advanced Studies, 4-6-7 Minami-Azabu, Minato-ku, 106, Tokyo, Japan", 
            "Department of Statistical Science, The Graduate University for Advanced Studies, 4-6-7 Minami-Azabu, Minato-ku, 106, Tokyo, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Hasegawa", 
        "givenName": "Masami", 
        "id": "sg:person.01316016622.98", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01316016622.98"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Statistical Science, The Graduate University for Advanced Studies, 4-6-7 Minami-Azabu, Minato-ku, 106, Tokyo, Japan", 
          "id": "http://www.grid.ac/institutes/grid.275033.0", 
          "name": [
            "The Institute of Statistical Mathematics, The Graduate University for Advanced Studies, 4-6-7 Minami-Azabu, Minato-ku, 106, Tokyo, Japan", 
            "Department of Statistical Science, The Graduate University for Advanced Studies, 4-6-7 Minami-Azabu, Minato-ku, 106, Tokyo, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kishino", 
        "givenName": "Hirohisa", 
        "id": "sg:person.010337516401.36", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010337516401.36"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Anthropology, University of Tokyo, Hongo, Bunkyo-ku, 113, Tokyo, Japan", 
          "id": "http://www.grid.ac/institutes/grid.26999.3d", 
          "name": [
            "Department of Anthropology, University of Tokyo, Hongo, Bunkyo-ku, 113, Tokyo, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Saitou", 
        "givenName": "Naruya", 
        "id": "sg:person.01021736077.21", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01021736077.21"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1007/bf02099932", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1046002134", 
          "https://doi.org/10.1007/bf02099932"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf02100082", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1010774829", 
          "https://doi.org/10.1007/bf02100082"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf01734359", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044065382", 
          "https://doi.org/10.1007/bf01734359"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "1991-05", 
    "datePublishedReg": "1991-05-01", 
    "description": "The efficiency of obtaining the correct tree by the maximum likelihood method (Felsenstein 1981) for inferring trees from DNA sequence data was compared with trees obtained by distance methods. It was shown that the maximum likelihood method is superior to distance methods in the efficiency particularly when the evolutionary rate differs among lineages.", 
    "genre": "article", 
    "id": "sg:pub.10.1007/bf02101285", 
    "inLanguage": "en", 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1016442", 
        "issn": [
          "0022-2844", 
          "1432-1432"
        ], 
        "name": "Journal of Molecular Evolution", 
        "publisher": "Springer Nature", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "5", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "32"
      }
    ], 
    "keywords": [
      "DNA sequence data", 
      "molecular phylogenetics", 
      "maximum likelihood method", 
      "evolutionary rates", 
      "sequence data", 
      "correct tree", 
      "likelihood method", 
      "trees", 
      "distance method", 
      "phylogenetics", 
      "lineages", 
      "efficiency", 
      "data", 
      "rate", 
      "method"
    ], 
    "name": "On the maximum likelihood method in molecular phylogenetics", 
    "pagination": "443-445", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1045563541"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/bf02101285"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "1904100"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/bf02101285", 
      "https://app.dimensions.ai/details/publication/pub.1045563541"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2022-05-20T07:19", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20220519/entities/gbq_results/article/article_260.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://doi.org/10.1007/bf02101285"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/bf02101285'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/bf02101285'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/bf02101285'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/bf02101285'


 

This table displays all metadata directly associated to this object as RDF triples.

119 TRIPLES      22 PREDICATES      48 URIs      37 LITERALS      10 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/bf02101285 schema:about N1552aa2e6170475c9e62e6687bd9568d
2 N387c89a029794a0e8c3e524808304c62
3 N6d77ca07eb9f49c7921c053feb1d64fe
4 anzsrc-for:06
5 anzsrc-for:0604
6 schema:author N32dbcce373914898914379566a7543f4
7 schema:citation sg:pub.10.1007/bf01734359
8 sg:pub.10.1007/bf02099932
9 sg:pub.10.1007/bf02100082
10 schema:datePublished 1991-05
11 schema:datePublishedReg 1991-05-01
12 schema:description The efficiency of obtaining the correct tree by the maximum likelihood method (Felsenstein 1981) for inferring trees from DNA sequence data was compared with trees obtained by distance methods. It was shown that the maximum likelihood method is superior to distance methods in the efficiency particularly when the evolutionary rate differs among lineages.
13 schema:genre article
14 schema:inLanguage en
15 schema:isAccessibleForFree false
16 schema:isPartOf Na5bd6223101c44c0a85babce4d88fbfc
17 Nc42c2cf37b274dad8692c4928c82ad8d
18 sg:journal.1016442
19 schema:keywords DNA sequence data
20 correct tree
21 data
22 distance method
23 efficiency
24 evolutionary rates
25 likelihood method
26 lineages
27 maximum likelihood method
28 method
29 molecular phylogenetics
30 phylogenetics
31 rate
32 sequence data
33 trees
34 schema:name On the maximum likelihood method in molecular phylogenetics
35 schema:pagination 443-445
36 schema:productId N846d30cc52c141809e871176a6d04ebc
37 N8c1bcd150a0d4a6bbd85450acd70ced3
38 Nd5e63b1858104046bdca501834b2bf1f
39 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045563541
40 https://doi.org/10.1007/bf02101285
41 schema:sdDatePublished 2022-05-20T07:19
42 schema:sdLicense https://scigraph.springernature.com/explorer/license/
43 schema:sdPublisher Nd6a24938ab2249afb7c09cd1df1746be
44 schema:url https://doi.org/10.1007/bf02101285
45 sgo:license sg:explorer/license/
46 sgo:sdDataset articles
47 rdf:type schema:ScholarlyArticle
48 N1552aa2e6170475c9e62e6687bd9568d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
49 schema:name Phylogeny
50 rdf:type schema:DefinedTerm
51 N32dbcce373914898914379566a7543f4 rdf:first sg:person.01316016622.98
52 rdf:rest Nd75716f755fe4d8887251be7db1f317a
53 N387c89a029794a0e8c3e524808304c62 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
54 schema:name Computer Simulation
55 rdf:type schema:DefinedTerm
56 N6d77ca07eb9f49c7921c053feb1d64fe schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
57 schema:name Genetic Techniques
58 rdf:type schema:DefinedTerm
59 N7e0d44d6bec24ca0ad9d085d81429270 rdf:first sg:person.01021736077.21
60 rdf:rest rdf:nil
61 N846d30cc52c141809e871176a6d04ebc schema:name pubmed_id
62 schema:value 1904100
63 rdf:type schema:PropertyValue
64 N8c1bcd150a0d4a6bbd85450acd70ced3 schema:name dimensions_id
65 schema:value pub.1045563541
66 rdf:type schema:PropertyValue
67 Na5bd6223101c44c0a85babce4d88fbfc schema:volumeNumber 32
68 rdf:type schema:PublicationVolume
69 Nc42c2cf37b274dad8692c4928c82ad8d schema:issueNumber 5
70 rdf:type schema:PublicationIssue
71 Nd5e63b1858104046bdca501834b2bf1f schema:name doi
72 schema:value 10.1007/bf02101285
73 rdf:type schema:PropertyValue
74 Nd6a24938ab2249afb7c09cd1df1746be schema:name Springer Nature - SN SciGraph project
75 rdf:type schema:Organization
76 Nd75716f755fe4d8887251be7db1f317a rdf:first sg:person.010337516401.36
77 rdf:rest N7e0d44d6bec24ca0ad9d085d81429270
78 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
79 schema:name Biological Sciences
80 rdf:type schema:DefinedTerm
81 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
82 schema:name Genetics
83 rdf:type schema:DefinedTerm
84 sg:journal.1016442 schema:issn 0022-2844
85 1432-1432
86 schema:name Journal of Molecular Evolution
87 schema:publisher Springer Nature
88 rdf:type schema:Periodical
89 sg:person.01021736077.21 schema:affiliation grid-institutes:grid.26999.3d
90 schema:familyName Saitou
91 schema:givenName Naruya
92 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01021736077.21
93 rdf:type schema:Person
94 sg:person.010337516401.36 schema:affiliation grid-institutes:grid.275033.0
95 schema:familyName Kishino
96 schema:givenName Hirohisa
97 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010337516401.36
98 rdf:type schema:Person
99 sg:person.01316016622.98 schema:affiliation grid-institutes:grid.275033.0
100 schema:familyName Hasegawa
101 schema:givenName Masami
102 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01316016622.98
103 rdf:type schema:Person
104 sg:pub.10.1007/bf01734359 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044065382
105 https://doi.org/10.1007/bf01734359
106 rdf:type schema:CreativeWork
107 sg:pub.10.1007/bf02099932 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046002134
108 https://doi.org/10.1007/bf02099932
109 rdf:type schema:CreativeWork
110 sg:pub.10.1007/bf02100082 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010774829
111 https://doi.org/10.1007/bf02100082
112 rdf:type schema:CreativeWork
113 grid-institutes:grid.26999.3d schema:alternateName Department of Anthropology, University of Tokyo, Hongo, Bunkyo-ku, 113, Tokyo, Japan
114 schema:name Department of Anthropology, University of Tokyo, Hongo, Bunkyo-ku, 113, Tokyo, Japan
115 rdf:type schema:Organization
116 grid-institutes:grid.275033.0 schema:alternateName Department of Statistical Science, The Graduate University for Advanced Studies, 4-6-7 Minami-Azabu, Minato-ku, 106, Tokyo, Japan
117 schema:name Department of Statistical Science, The Graduate University for Advanced Studies, 4-6-7 Minami-Azabu, Minato-ku, 106, Tokyo, Japan
118 The Institute of Statistical Mathematics, The Graduate University for Advanced Studies, 4-6-7 Minami-Azabu, Minato-ku, 106, Tokyo, Japan
119 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...