Sequence homologies amongE. coli ribosomal proteins: Evidence for evolutionarily related groupings and internal duplications View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

1980-06

AUTHORS

R. A. Jue, N. W. Woodbury, R. F. Doolittle

ABSTRACT

The complete or partial sequences of 47E. coli ribosomal proteins described in the literature have been examined by computerized search and matching programs. In contrast to results previously reported by other investigators, sequence homologies were uncovered among some of these ribosomal proteins that are well beyond statistical expectations. Moreover, alignments of the most strongly homologous sequences suggested the existence of a network of family groupings. Several of these proteins also exhibit internal homologies, indicating that they have been elongated by a series of tandem duplications. More... »

PAGES

129-148

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/bf01732666

DOI

http://dx.doi.org/10.1007/bf01732666

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1024065349

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/6995620


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0601", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biochemistry and Cell Biology", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Amino Acid Sequence", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Animals", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Biological Evolution", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Computers", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Escherichia coli", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Ribosomal Proteins", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Department of Chemistry, University of California, 92093, San Diego, La Jolla, California, USA", 
          "id": "http://www.grid.ac/institutes/grid.266100.3", 
          "name": [
            "Department of Chemistry, University of California, 92093, San Diego, La Jolla, California, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Jue", 
        "givenName": "R. A.", 
        "id": "sg:person.01012635604.06", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01012635604.06"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Chemistry, University of California, 92093, San Diego, La Jolla, California, USA", 
          "id": "http://www.grid.ac/institutes/grid.266100.3", 
          "name": [
            "Department of Chemistry, University of California, 92093, San Diego, La Jolla, California, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Woodbury", 
        "givenName": "N. W.", 
        "id": "sg:person.01141414453.02", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01141414453.02"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Chemistry, University of California, 92093, San Diego, La Jolla, California, USA", 
          "id": "http://www.grid.ac/institutes/grid.266100.3", 
          "name": [
            "Department of Chemistry, University of California, 92093, San Diego, La Jolla, California, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Doolittle", 
        "givenName": "R. F.", 
        "id": "sg:person.0725046016.27", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0725046016.27"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1038/2191166a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013806849", 
          "https://doi.org/10.1038/2191166a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/215735a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1029627529", 
          "https://doi.org/10.1038/215735a0"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "1980-06", 
    "datePublishedReg": "1980-06-01", 
    "description": "The complete or partial sequences of 47E. coli ribosomal proteins described in the literature have been examined by computerized search and matching programs. In contrast to results previously reported by other investigators, sequence homologies were uncovered among some of these ribosomal proteins that are well beyond statistical expectations. Moreover, alignments of the most strongly homologous sequences suggested the existence of a network of family groupings. Several of these proteins also exhibit internal homologies, indicating that they have been elongated by a series of tandem duplications.", 
    "genre": "article", 
    "id": "sg:pub.10.1007/bf01732666", 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1016442", 
        "issn": [
          "0022-2844", 
          "1432-1432"
        ], 
        "name": "Journal of Molecular Evolution", 
        "publisher": "Springer Nature", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "2", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "15"
      }
    ], 
    "keywords": [
      "statistical expectations", 
      "existence", 
      "network", 
      "sequence", 
      "search", 
      "results", 
      "grouping", 
      "literature", 
      "alignment", 
      "series", 
      "program", 
      "contrast", 
      "expectations", 
      "family groupings", 
      "investigators", 
      "homology", 
      "homologous sequences", 
      "evidence", 
      "duplication", 
      "partial sequences", 
      "coli ribosomal proteins", 
      "ribosomal proteins", 
      "protein", 
      "computerized search", 
      "sequence homology", 
      "internal homology", 
      "tandem duplication", 
      "internal duplication"
    ], 
    "name": "Sequence homologies amongE. coli ribosomal proteins: Evidence for evolutionarily related groupings and internal duplications", 
    "pagination": "129-148", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1024065349"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/bf01732666"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "6995620"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/bf01732666", 
      "https://app.dimensions.ai/details/publication/pub.1024065349"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2022-10-01T06:27", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20221001/entities/gbq_results/article/article_172.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://doi.org/10.1007/bf01732666"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/bf01732666'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/bf01732666'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/bf01732666'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/bf01732666'


 

This table displays all metadata directly associated to this object as RDF triples.

135 TRIPLES      21 PREDICATES      62 URIs      52 LITERALS      13 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/bf01732666 schema:about N1e8a109c6dc24340b8205c0615de1a65
2 N20e3c2e70594404fab36a8f4390a992f
3 N6eafc8b52a1d4db184b11fdd906bfa2e
4 Na98cb576fd33486ea4a343b9cd6c1298
5 Nbde8ef31130d4bf1bdf481a3a49cb8a0
6 Nbfda5da5dc0e48428dacbb2cb7b7eed8
7 anzsrc-for:06
8 anzsrc-for:0601
9 schema:author Nd225d1bc54014d0f8f21ec5cbeca0b1c
10 schema:citation sg:pub.10.1038/215735a0
11 sg:pub.10.1038/2191166a0
12 schema:datePublished 1980-06
13 schema:datePublishedReg 1980-06-01
14 schema:description The complete or partial sequences of 47E. coli ribosomal proteins described in the literature have been examined by computerized search and matching programs. In contrast to results previously reported by other investigators, sequence homologies were uncovered among some of these ribosomal proteins that are well beyond statistical expectations. Moreover, alignments of the most strongly homologous sequences suggested the existence of a network of family groupings. Several of these proteins also exhibit internal homologies, indicating that they have been elongated by a series of tandem duplications.
15 schema:genre article
16 schema:isAccessibleForFree false
17 schema:isPartOf N0e12c9727787488a9615b232f470d887
18 N635f045b261f402186089066d0f9326f
19 sg:journal.1016442
20 schema:keywords alignment
21 coli ribosomal proteins
22 computerized search
23 contrast
24 duplication
25 evidence
26 existence
27 expectations
28 family groupings
29 grouping
30 homologous sequences
31 homology
32 internal duplication
33 internal homology
34 investigators
35 literature
36 network
37 partial sequences
38 program
39 protein
40 results
41 ribosomal proteins
42 search
43 sequence
44 sequence homology
45 series
46 statistical expectations
47 tandem duplication
48 schema:name Sequence homologies amongE. coli ribosomal proteins: Evidence for evolutionarily related groupings and internal duplications
49 schema:pagination 129-148
50 schema:productId N1925970d3bcb43f081ccade3642cb702
51 N2207501c0aff454eba5993bacb0826f0
52 N9849844ab6854782a0aaf920d6e94021
53 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024065349
54 https://doi.org/10.1007/bf01732666
55 schema:sdDatePublished 2022-10-01T06:27
56 schema:sdLicense https://scigraph.springernature.com/explorer/license/
57 schema:sdPublisher N96b3947022ac4a59ba366096904965da
58 schema:url https://doi.org/10.1007/bf01732666
59 sgo:license sg:explorer/license/
60 sgo:sdDataset articles
61 rdf:type schema:ScholarlyArticle
62 N0e12c9727787488a9615b232f470d887 schema:volumeNumber 15
63 rdf:type schema:PublicationVolume
64 N1925970d3bcb43f081ccade3642cb702 schema:name doi
65 schema:value 10.1007/bf01732666
66 rdf:type schema:PropertyValue
67 N1e8a109c6dc24340b8205c0615de1a65 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
68 schema:name Computers
69 rdf:type schema:DefinedTerm
70 N20e3c2e70594404fab36a8f4390a992f schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
71 schema:name Animals
72 rdf:type schema:DefinedTerm
73 N2207501c0aff454eba5993bacb0826f0 schema:name dimensions_id
74 schema:value pub.1024065349
75 rdf:type schema:PropertyValue
76 N635f045b261f402186089066d0f9326f schema:issueNumber 2
77 rdf:type schema:PublicationIssue
78 N6eafc8b52a1d4db184b11fdd906bfa2e schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
79 schema:name Ribosomal Proteins
80 rdf:type schema:DefinedTerm
81 N904ba1cc43f14c599e535ffc72d38f29 rdf:first sg:person.0725046016.27
82 rdf:rest rdf:nil
83 N96b3947022ac4a59ba366096904965da schema:name Springer Nature - SN SciGraph project
84 rdf:type schema:Organization
85 N9849844ab6854782a0aaf920d6e94021 schema:name pubmed_id
86 schema:value 6995620
87 rdf:type schema:PropertyValue
88 Na3e195085f614dd0a251adc485583ace rdf:first sg:person.01141414453.02
89 rdf:rest N904ba1cc43f14c599e535ffc72d38f29
90 Na98cb576fd33486ea4a343b9cd6c1298 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
91 schema:name Biological Evolution
92 rdf:type schema:DefinedTerm
93 Nbde8ef31130d4bf1bdf481a3a49cb8a0 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
94 schema:name Escherichia coli
95 rdf:type schema:DefinedTerm
96 Nbfda5da5dc0e48428dacbb2cb7b7eed8 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
97 schema:name Amino Acid Sequence
98 rdf:type schema:DefinedTerm
99 Nd225d1bc54014d0f8f21ec5cbeca0b1c rdf:first sg:person.01012635604.06
100 rdf:rest Na3e195085f614dd0a251adc485583ace
101 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
102 schema:name Biological Sciences
103 rdf:type schema:DefinedTerm
104 anzsrc-for:0601 schema:inDefinedTermSet anzsrc-for:
105 schema:name Biochemistry and Cell Biology
106 rdf:type schema:DefinedTerm
107 sg:journal.1016442 schema:issn 0022-2844
108 1432-1432
109 schema:name Journal of Molecular Evolution
110 schema:publisher Springer Nature
111 rdf:type schema:Periodical
112 sg:person.01012635604.06 schema:affiliation grid-institutes:grid.266100.3
113 schema:familyName Jue
114 schema:givenName R. A.
115 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01012635604.06
116 rdf:type schema:Person
117 sg:person.01141414453.02 schema:affiliation grid-institutes:grid.266100.3
118 schema:familyName Woodbury
119 schema:givenName N. W.
120 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01141414453.02
121 rdf:type schema:Person
122 sg:person.0725046016.27 schema:affiliation grid-institutes:grid.266100.3
123 schema:familyName Doolittle
124 schema:givenName R. F.
125 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0725046016.27
126 rdf:type schema:Person
127 sg:pub.10.1038/215735a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029627529
128 https://doi.org/10.1038/215735a0
129 rdf:type schema:CreativeWork
130 sg:pub.10.1038/2191166a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013806849
131 https://doi.org/10.1038/2191166a0
132 rdf:type schema:CreativeWork
133 grid-institutes:grid.266100.3 schema:alternateName Department of Chemistry, University of California, 92093, San Diego, La Jolla, California, USA
134 schema:name Department of Chemistry, University of California, 92093, San Diego, La Jolla, California, USA
135 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...