Differential expression within a family of novel wound-induced genes in potato View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

1989-01

AUTHORS

Anne Stanford, Michael Bevan, Don Northcote

ABSTRACT

Wounding in higher plants leads to an increased synthesis of specific messenger RNAs. A cDNA clone complementary to a wound-induced message from potato tubers was used to isolate a lambda clone from a genomic library of Salanum tuberosum var. Maris Piper. DNA sequence analysis has shown that this single genomic clone contains two novel wound-induced genes, called win1 and win2, organised in close tandem array. The coding sequences of these two genes are highly homologous and are interrupted by a single intron. However, the sequences of the introns and flanking regions have diverged widely. Win1 and win2 encode cysteine-rich proteins of 200 and 211 amino-acids, respectively, which show striking homologies to several chitin-binding proteins. Southern analysis of genomic DNA has shown that win1 and win2 are members of a small multi-gene family which is estimated to have a minimum of five members per haploid genome of Maris Piper and appears to be conserved within the Solanaceae. We have shown by Northern analysis and S1 mapping that the two genes exhibit differential organ-specific expression after the wounding of a potato plant. More... »

PAGES

200-208

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/bf00339718

DOI

http://dx.doi.org/10.1007/bf00339718

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1035683503

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/2710099


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Amino Acid Sequence", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Base Sequence", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genes", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Molecular Sequence Data", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Plants", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "RNA, Messenger", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Restriction Mapping", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Solanum tuberosum", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Department of Molecular Genetics, Institute of Plant Science Research, Maris Lane, Trumpington, CB2 2JB, Cambridge, UK", 
          "id": "http://www.grid.ac/institutes/None", 
          "name": [
            "Department of Molecular Genetics, Institute of Plant Science Research, Maris Lane, Trumpington, CB2 2JB, Cambridge, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Stanford", 
        "givenName": "Anne", 
        "id": "sg:person.01145563413.42", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01145563413.42"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Molecular Genetics, Institute of Plant Science Research, Maris Lane, Trumpington, CB2 2JB, Cambridge, UK", 
          "id": "http://www.grid.ac/institutes/None", 
          "name": [
            "Department of Molecular Genetics, Institute of Plant Science Research, Maris Lane, Trumpington, CB2 2JB, Cambridge, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Bevan", 
        "givenName": "Michael", 
        "id": "sg:person.01213676613.93", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01213676613.93"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Biochemistry, University of Cambridge, Tennis Court Road, CB2 1QW, Cambridge, UK", 
          "id": "http://www.grid.ac/institutes/grid.5335.0", 
          "name": [
            "Department of Biochemistry, University of Cambridge, Tennis Court Road, CB2 1QW, Cambridge, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Northcote", 
        "givenName": "Don", 
        "id": "sg:person.01262012013.40", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01262012013.40"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1007/bf00396748", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1040585222", 
          "https://doi.org/10.1007/bf00396748"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/302670a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1034084215", 
          "https://doi.org/10.1038/302670a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/311076a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1041373725", 
          "https://doi.org/10.1038/311076a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf02418757", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1010357962", 
          "https://doi.org/10.1007/bf02418757"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf00325687", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047686818", 
          "https://doi.org/10.1007/bf00325687"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "1989-01", 
    "datePublishedReg": "1989-01-01", 
    "description": "Wounding in higher plants leads to an increased synthesis of specific messenger RNAs. A cDNA clone complementary to a wound-induced message from potato tubers was used to isolate a lambda clone from a genomic library of Salanum tuberosum var. Maris Piper. DNA sequence analysis has shown that this single genomic clone contains two novel wound-induced genes, called win1 and win2, organised in close tandem array. The coding sequences of these two genes are highly homologous and are interrupted by a single intron. However, the sequences of the introns and flanking regions have diverged widely. Win1 and win2 encode cysteine-rich proteins of 200 and 211 amino-acids, respectively, which show striking homologies to several chitin-binding proteins. Southern analysis of genomic DNA has shown that win1 and win2 are members of a small multi-gene family which is estimated to have a minimum of five members per haploid genome of Maris Piper and appears to be conserved within the Solanaceae. We have shown by Northern analysis and S1 mapping that the two genes exhibit differential organ-specific expression after the wounding of a potato plant.", 
    "genre": "article", 
    "id": "sg:pub.10.1007/bf00339718", 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1297380", 
        "issn": [
          "1617-4615", 
          "1432-1874"
        ], 
        "name": "Molecular Genetics and Genomics", 
        "publisher": "Springer Nature", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "2", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "215"
      }
    ], 
    "keywords": [
      "wound-induced genes", 
      "small multi-gene family", 
      "multi-gene family", 
      "organ-specific expression", 
      "chitin-binding proteins", 
      "single genomic clone", 
      "cysteine-rich protein", 
      "specific messenger RNAs", 
      "DNA sequence analysis", 
      "single intron", 
      "genomic clones", 
      "haploid genome", 
      "higher plants", 
      "genomic library", 
      "tandem arrays", 
      "S1 mapping", 
      "lambda clones", 
      "cDNA clones", 
      "potato plants", 
      "striking homology", 
      "Southern analysis", 
      "flanking regions", 
      "WIN1", 
      "genomic DNA", 
      "Northern analysis", 
      "sequence analysis", 
      "differential expression", 
      "genes", 
      "messenger RNA", 
      "WIN2", 
      "introns", 
      "clones", 
      "potato tubers", 
      "Maris Piper", 
      "plants", 
      "protein", 
      "sequence", 
      "expression", 
      "genome", 
      "Solanaceae", 
      "family", 
      "homology", 
      "RNA", 
      "wounding", 
      "members", 
      "DNA", 
      "var", 
      "potato", 
      "tubers", 
      "Piper", 
      "library", 
      "analysis", 
      "region", 
      "mapping", 
      "synthesis", 
      "array", 
      "minimum", 
      "messages"
    ], 
    "name": "Differential expression within a family of novel wound-induced genes in potato", 
    "pagination": "200-208", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1035683503"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/bf00339718"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "2710099"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/bf00339718", 
      "https://app.dimensions.ai/details/publication/pub.1035683503"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2022-11-24T20:46", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20221124/entities/gbq_results/article/article_189.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://doi.org/10.1007/bf00339718"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/bf00339718'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/bf00339718'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/bf00339718'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/bf00339718'


 

This table displays all metadata directly associated to this object as RDF triples.

192 TRIPLES      21 PREDICATES      98 URIs      85 LITERALS      16 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/bf00339718 schema:about N0968f46363dd4b4e87efc9f7ca8838f3
2 N17164d7c7cbd4a578ffbdffcea362fba
3 N2bb86b948d2a475f97ccbd33a14faaf6
4 N7ac63951d94e45d5a30bc0da7b9b0385
5 N90bee30383a141a89730d6e719928915
6 Ndd1bd89faf99487fb6ff6742a16a6573
7 Ne331f8129d6c437684dedc8b345936b1
8 Ne542225831e0416089cb03a6160f1ca0
9 Nec50fad9ca7b44599f588160ff67ac43
10 anzsrc-for:06
11 anzsrc-for:0604
12 schema:author Nda2da17beee94960b3ecf313caa215a1
13 schema:citation sg:pub.10.1007/bf00325687
14 sg:pub.10.1007/bf00396748
15 sg:pub.10.1007/bf02418757
16 sg:pub.10.1038/302670a0
17 sg:pub.10.1038/311076a0
18 schema:datePublished 1989-01
19 schema:datePublishedReg 1989-01-01
20 schema:description Wounding in higher plants leads to an increased synthesis of specific messenger RNAs. A cDNA clone complementary to a wound-induced message from potato tubers was used to isolate a lambda clone from a genomic library of Salanum tuberosum var. Maris Piper. DNA sequence analysis has shown that this single genomic clone contains two novel wound-induced genes, called win1 and win2, organised in close tandem array. The coding sequences of these two genes are highly homologous and are interrupted by a single intron. However, the sequences of the introns and flanking regions have diverged widely. Win1 and win2 encode cysteine-rich proteins of 200 and 211 amino-acids, respectively, which show striking homologies to several chitin-binding proteins. Southern analysis of genomic DNA has shown that win1 and win2 are members of a small multi-gene family which is estimated to have a minimum of five members per haploid genome of Maris Piper and appears to be conserved within the Solanaceae. We have shown by Northern analysis and S1 mapping that the two genes exhibit differential organ-specific expression after the wounding of a potato plant.
21 schema:genre article
22 schema:isAccessibleForFree false
23 schema:isPartOf N52e6c30d642749dc8f73041e946af7b2
24 N553311582dae4bb9aaf7542c602ac7bd
25 sg:journal.1297380
26 schema:keywords DNA
27 DNA sequence analysis
28 Maris Piper
29 Northern analysis
30 Piper
31 RNA
32 S1 mapping
33 Solanaceae
34 Southern analysis
35 WIN1
36 WIN2
37 analysis
38 array
39 cDNA clones
40 chitin-binding proteins
41 clones
42 cysteine-rich protein
43 differential expression
44 expression
45 family
46 flanking regions
47 genes
48 genome
49 genomic DNA
50 genomic clones
51 genomic library
52 haploid genome
53 higher plants
54 homology
55 introns
56 lambda clones
57 library
58 mapping
59 members
60 messages
61 messenger RNA
62 minimum
63 multi-gene family
64 organ-specific expression
65 plants
66 potato
67 potato plants
68 potato tubers
69 protein
70 region
71 sequence
72 sequence analysis
73 single genomic clone
74 single intron
75 small multi-gene family
76 specific messenger RNAs
77 striking homology
78 synthesis
79 tandem arrays
80 tubers
81 var
82 wound-induced genes
83 wounding
84 schema:name Differential expression within a family of novel wound-induced genes in potato
85 schema:pagination 200-208
86 schema:productId Na73b4c9783bf4bef92e439bd0efa9e21
87 Nc50c043e3a7a4193ae9615e344e8e504
88 Nd5ac4642035441da96e094c61dd7361c
89 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035683503
90 https://doi.org/10.1007/bf00339718
91 schema:sdDatePublished 2022-11-24T20:46
92 schema:sdLicense https://scigraph.springernature.com/explorer/license/
93 schema:sdPublisher Nb1ef13fc59bb4e4ba76a10c7a10de3d4
94 schema:url https://doi.org/10.1007/bf00339718
95 sgo:license sg:explorer/license/
96 sgo:sdDataset articles
97 rdf:type schema:ScholarlyArticle
98 N0968f46363dd4b4e87efc9f7ca8838f3 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
99 schema:name Base Sequence
100 rdf:type schema:DefinedTerm
101 N17164d7c7cbd4a578ffbdffcea362fba schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
102 schema:name Solanum tuberosum
103 rdf:type schema:DefinedTerm
104 N2bb86b948d2a475f97ccbd33a14faaf6 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
105 schema:name Amino Acid Sequence
106 rdf:type schema:DefinedTerm
107 N3148f818409b4772b894fae7121a7b3a rdf:first sg:person.01213676613.93
108 rdf:rest Ne1056a7e02c840c4bc09d8da4dc01b71
109 N52e6c30d642749dc8f73041e946af7b2 schema:volumeNumber 215
110 rdf:type schema:PublicationVolume
111 N553311582dae4bb9aaf7542c602ac7bd schema:issueNumber 2
112 rdf:type schema:PublicationIssue
113 N7ac63951d94e45d5a30bc0da7b9b0385 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
114 schema:name Restriction Mapping
115 rdf:type schema:DefinedTerm
116 N90bee30383a141a89730d6e719928915 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
117 schema:name Genes
118 rdf:type schema:DefinedTerm
119 Na73b4c9783bf4bef92e439bd0efa9e21 schema:name doi
120 schema:value 10.1007/bf00339718
121 rdf:type schema:PropertyValue
122 Nb1ef13fc59bb4e4ba76a10c7a10de3d4 schema:name Springer Nature - SN SciGraph project
123 rdf:type schema:Organization
124 Nc50c043e3a7a4193ae9615e344e8e504 schema:name pubmed_id
125 schema:value 2710099
126 rdf:type schema:PropertyValue
127 Nd5ac4642035441da96e094c61dd7361c schema:name dimensions_id
128 schema:value pub.1035683503
129 rdf:type schema:PropertyValue
130 Nda2da17beee94960b3ecf313caa215a1 rdf:first sg:person.01145563413.42
131 rdf:rest N3148f818409b4772b894fae7121a7b3a
132 Ndd1bd89faf99487fb6ff6742a16a6573 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
133 schema:name DNA
134 rdf:type schema:DefinedTerm
135 Ne1056a7e02c840c4bc09d8da4dc01b71 rdf:first sg:person.01262012013.40
136 rdf:rest rdf:nil
137 Ne331f8129d6c437684dedc8b345936b1 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
138 schema:name RNA, Messenger
139 rdf:type schema:DefinedTerm
140 Ne542225831e0416089cb03a6160f1ca0 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
141 schema:name Plants
142 rdf:type schema:DefinedTerm
143 Nec50fad9ca7b44599f588160ff67ac43 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
144 schema:name Molecular Sequence Data
145 rdf:type schema:DefinedTerm
146 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
147 schema:name Biological Sciences
148 rdf:type schema:DefinedTerm
149 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
150 schema:name Genetics
151 rdf:type schema:DefinedTerm
152 sg:journal.1297380 schema:issn 1432-1874
153 1617-4615
154 schema:name Molecular Genetics and Genomics
155 schema:publisher Springer Nature
156 rdf:type schema:Periodical
157 sg:person.01145563413.42 schema:affiliation grid-institutes:None
158 schema:familyName Stanford
159 schema:givenName Anne
160 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01145563413.42
161 rdf:type schema:Person
162 sg:person.01213676613.93 schema:affiliation grid-institutes:None
163 schema:familyName Bevan
164 schema:givenName Michael
165 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01213676613.93
166 rdf:type schema:Person
167 sg:person.01262012013.40 schema:affiliation grid-institutes:grid.5335.0
168 schema:familyName Northcote
169 schema:givenName Don
170 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01262012013.40
171 rdf:type schema:Person
172 sg:pub.10.1007/bf00325687 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047686818
173 https://doi.org/10.1007/bf00325687
174 rdf:type schema:CreativeWork
175 sg:pub.10.1007/bf00396748 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040585222
176 https://doi.org/10.1007/bf00396748
177 rdf:type schema:CreativeWork
178 sg:pub.10.1007/bf02418757 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010357962
179 https://doi.org/10.1007/bf02418757
180 rdf:type schema:CreativeWork
181 sg:pub.10.1038/302670a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034084215
182 https://doi.org/10.1038/302670a0
183 rdf:type schema:CreativeWork
184 sg:pub.10.1038/311076a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041373725
185 https://doi.org/10.1038/311076a0
186 rdf:type schema:CreativeWork
187 grid-institutes:None schema:alternateName Department of Molecular Genetics, Institute of Plant Science Research, Maris Lane, Trumpington, CB2 2JB, Cambridge, UK
188 schema:name Department of Molecular Genetics, Institute of Plant Science Research, Maris Lane, Trumpington, CB2 2JB, Cambridge, UK
189 rdf:type schema:Organization
190 grid-institutes:grid.5335.0 schema:alternateName Department of Biochemistry, University of Cambridge, Tennis Court Road, CB2 1QW, Cambridge, UK
191 schema:name Department of Biochemistry, University of Cambridge, Tennis Court Road, CB2 1QW, Cambridge, UK
192 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...