Integration of plasmid pΦHL into phage genomes during infection of Halobacterium halobium R1-L with phage ΦHL1 View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

1984-10

AUTHORS

Heinke Schnabel

ABSTRACT

The plasmid pΦHL, which arose by circularization of the invertible L segment of phage ΦH, integrates into phage DNA during growth of phage ΦHL1 on the Halobacterium halobium strain R1-L. More than 1% of all phage DNA isolated from such a lysate contains integrated pΦHL. Recombination between the plasmid and the homologous L segment in the phage genome occurs with equally high frequency on both sides of a 1 kb insertion present in ΦHL1 DNA but absent from pΦHL. Thus, homologous recombination is an important factor in the generation of DNA rearrangements in H. halobium. More... »

PAGES

19-23

References to SciGraph publications

  • 1982-12. Structural variability in the genome of phage ϕH of Halobacterium halobium in MOLECULAR GENETICS AND GENOMICS
  • 1983. Transposable Elements in Archaebacteria in GENETIC ENGINEERING
  • 1983-08. Transposable elements of Halobacterium halobium in MOLECULAR GENETICS AND GENOMICS
  • 1984-03. Circular structure of the genome of phage ϕH in a lysogenic Halobacterium halobium in MOLECULAR GENETICS AND GENOMICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/bf00327917

    DOI

    http://dx.doi.org/10.1007/bf00327917

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1039556503


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "about": [
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Genetics", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biological Sciences", 
            "type": "DefinedTerm"
          }
        ], 
        "author": [
          {
            "affiliation": {
              "alternateName": "Max Planck Institute of Biochemistry", 
              "id": "https://www.grid.ac/institutes/grid.418615.f", 
              "name": [
                "Max-Planck-Institut f\u00fcr Biochemie, D-8033, Martinsried bei M\u00fcnchen, Federal Republic of Germany"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Schnabel", 
            "givenName": "Heinke", 
            "id": "sg:person.0706614060.63", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0706614060.63"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "https://doi.org/10.1073/pnas.81.1.125", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1016047085"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00382078", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020223845", 
              "https://doi.org/10.1007/bf00382078"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00382078", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020223845", 
              "https://doi.org/10.1007/bf00382078"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.79.23.7268", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1022192742"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/978-1-4684-4556-5_3", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024320369", 
              "https://doi.org/10.1007/978-1-4684-4556-5_3"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00330036", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1032881945", 
              "https://doi.org/10.1007/bf00330036"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00330036", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1032881945", 
              "https://doi.org/10.1007/bf00330036"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.80.5.1416", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1043265533"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/12.5.2489", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047091718"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/11.12.4195", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1049990061"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.81.4.1017", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050457219"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00334811", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051983864", 
              "https://doi.org/10.1007/bf00334811"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00334811", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051983864", 
              "https://doi.org/10.1007/bf00334811"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1002/j.1460-2075.1982.tb01129.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1077183541"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1081648233", 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "1984-10", 
        "datePublishedReg": "1984-10-01", 
        "description": "The plasmid p\u03a6HL, which arose by circularization of the invertible L segment of phage \u03a6H, integrates into phage DNA during growth of phage \u03a6HL1 on the Halobacterium halobium strain R1-L. More than 1% of all phage DNA isolated from such a lysate contains integrated p\u03a6HL. Recombination between the plasmid and the homologous L segment in the phage genome occurs with equally high frequency on both sides of a 1 kb insertion present in \u03a6HL1 DNA but absent from p\u03a6HL. Thus, homologous recombination is an important factor in the generation of DNA rearrangements in H. halobium.", 
        "genre": "research_article", 
        "id": "sg:pub.10.1007/bf00327917", 
        "inLanguage": [
          "en"
        ], 
        "isAccessibleForFree": false, 
        "isPartOf": [
          {
            "id": "sg:journal.1297380", 
            "issn": [
              "1617-4615", 
              "1432-1874"
            ], 
            "name": "Molecular Genetics and Genomics", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "1", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "197"
          }
        ], 
        "name": "Integration of plasmid p\u03a6HL into phage genomes during infection of Halobacterium halobium R1-L with phage \u03a6HL1", 
        "pagination": "19-23", 
        "productId": [
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1007/bf00327917"
            ]
          }, 
          {
            "name": "readcube_id", 
            "type": "PropertyValue", 
            "value": [
              "bc6da694f35928ca4a3dc312ae314c5f287694b1f0e62bc19a9a9ab399a705e3"
            ]
          }, 
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1039556503"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1007/bf00327917", 
          "https://app.dimensions.ai/details/publication/pub.1039556503"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2019-04-15T08:52", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000374_0000000374/records_119741_00000000.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "http://link.springer.com/10.1007/BF00327917"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/bf00327917'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/bf00327917'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/bf00327917'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/bf00327917'


     

    This table displays all metadata directly associated to this object as RDF triples.

    100 TRIPLES      21 PREDICATES      39 URIs      19 LITERALS      7 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1007/bf00327917 schema:about anzsrc-for:06
    2 anzsrc-for:0604
    3 schema:author N1778eaa95f1c4585a17cfc4e80ef793e
    4 schema:citation sg:pub.10.1007/978-1-4684-4556-5_3
    5 sg:pub.10.1007/bf00330036
    6 sg:pub.10.1007/bf00334811
    7 sg:pub.10.1007/bf00382078
    8 https://app.dimensions.ai/details/publication/pub.1081648233
    9 https://doi.org/10.1002/j.1460-2075.1982.tb01129.x
    10 https://doi.org/10.1073/pnas.79.23.7268
    11 https://doi.org/10.1073/pnas.80.5.1416
    12 https://doi.org/10.1073/pnas.81.1.125
    13 https://doi.org/10.1073/pnas.81.4.1017
    14 https://doi.org/10.1093/nar/11.12.4195
    15 https://doi.org/10.1093/nar/12.5.2489
    16 schema:datePublished 1984-10
    17 schema:datePublishedReg 1984-10-01
    18 schema:description The plasmid pΦHL, which arose by circularization of the invertible L segment of phage ΦH, integrates into phage DNA during growth of phage ΦHL1 on the Halobacterium halobium strain R1-L. More than 1% of all phage DNA isolated from such a lysate contains integrated pΦHL. Recombination between the plasmid and the homologous L segment in the phage genome occurs with equally high frequency on both sides of a 1 kb insertion present in ΦHL1 DNA but absent from pΦHL. Thus, homologous recombination is an important factor in the generation of DNA rearrangements in H. halobium.
    19 schema:genre research_article
    20 schema:inLanguage en
    21 schema:isAccessibleForFree false
    22 schema:isPartOf N2037bf6945e5408b878ab9b33422a177
    23 N7b7bef647ce745d5a04fd0d98ef63212
    24 sg:journal.1297380
    25 schema:name Integration of plasmid pΦHL into phage genomes during infection of Halobacterium halobium R1-L with phage ΦHL1
    26 schema:pagination 19-23
    27 schema:productId N12f09ddc02dd4af4acdfd25819a90b71
    28 N98be8e623d16429884b962eef7d68981
    29 Nb7d09ba94190484aad0291943173fd1d
    30 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039556503
    31 https://doi.org/10.1007/bf00327917
    32 schema:sdDatePublished 2019-04-15T08:52
    33 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    34 schema:sdPublisher N6f12c01f6ee84d608dfe7dae1bdaed40
    35 schema:url http://link.springer.com/10.1007/BF00327917
    36 sgo:license sg:explorer/license/
    37 sgo:sdDataset articles
    38 rdf:type schema:ScholarlyArticle
    39 N12f09ddc02dd4af4acdfd25819a90b71 schema:name readcube_id
    40 schema:value bc6da694f35928ca4a3dc312ae314c5f287694b1f0e62bc19a9a9ab399a705e3
    41 rdf:type schema:PropertyValue
    42 N1778eaa95f1c4585a17cfc4e80ef793e rdf:first sg:person.0706614060.63
    43 rdf:rest rdf:nil
    44 N2037bf6945e5408b878ab9b33422a177 schema:issueNumber 1
    45 rdf:type schema:PublicationIssue
    46 N6f12c01f6ee84d608dfe7dae1bdaed40 schema:name Springer Nature - SN SciGraph project
    47 rdf:type schema:Organization
    48 N7b7bef647ce745d5a04fd0d98ef63212 schema:volumeNumber 197
    49 rdf:type schema:PublicationVolume
    50 N98be8e623d16429884b962eef7d68981 schema:name doi
    51 schema:value 10.1007/bf00327917
    52 rdf:type schema:PropertyValue
    53 Nb7d09ba94190484aad0291943173fd1d schema:name dimensions_id
    54 schema:value pub.1039556503
    55 rdf:type schema:PropertyValue
    56 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
    57 schema:name Biological Sciences
    58 rdf:type schema:DefinedTerm
    59 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
    60 schema:name Genetics
    61 rdf:type schema:DefinedTerm
    62 sg:journal.1297380 schema:issn 1432-1874
    63 1617-4615
    64 schema:name Molecular Genetics and Genomics
    65 rdf:type schema:Periodical
    66 sg:person.0706614060.63 schema:affiliation https://www.grid.ac/institutes/grid.418615.f
    67 schema:familyName Schnabel
    68 schema:givenName Heinke
    69 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0706614060.63
    70 rdf:type schema:Person
    71 sg:pub.10.1007/978-1-4684-4556-5_3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024320369
    72 https://doi.org/10.1007/978-1-4684-4556-5_3
    73 rdf:type schema:CreativeWork
    74 sg:pub.10.1007/bf00330036 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032881945
    75 https://doi.org/10.1007/bf00330036
    76 rdf:type schema:CreativeWork
    77 sg:pub.10.1007/bf00334811 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051983864
    78 https://doi.org/10.1007/bf00334811
    79 rdf:type schema:CreativeWork
    80 sg:pub.10.1007/bf00382078 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020223845
    81 https://doi.org/10.1007/bf00382078
    82 rdf:type schema:CreativeWork
    83 https://app.dimensions.ai/details/publication/pub.1081648233 schema:CreativeWork
    84 https://doi.org/10.1002/j.1460-2075.1982.tb01129.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1077183541
    85 rdf:type schema:CreativeWork
    86 https://doi.org/10.1073/pnas.79.23.7268 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022192742
    87 rdf:type schema:CreativeWork
    88 https://doi.org/10.1073/pnas.80.5.1416 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043265533
    89 rdf:type schema:CreativeWork
    90 https://doi.org/10.1073/pnas.81.1.125 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016047085
    91 rdf:type schema:CreativeWork
    92 https://doi.org/10.1073/pnas.81.4.1017 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050457219
    93 rdf:type schema:CreativeWork
    94 https://doi.org/10.1093/nar/11.12.4195 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049990061
    95 rdf:type schema:CreativeWork
    96 https://doi.org/10.1093/nar/12.5.2489 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047091718
    97 rdf:type schema:CreativeWork
    98 https://www.grid.ac/institutes/grid.418615.f schema:alternateName Max Planck Institute of Biochemistry
    99 schema:name Max-Planck-Institut für Biochemie, D-8033, Martinsried bei München, Federal Republic of Germany
    100 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...