Comparison of RFLP and RAPD markers to estimating genetic relationships within and among cruciferous species View Full Text


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Article Info

DATE

1994-09

AUTHORS

C. E. Thormann, M. E. Ferreira, L. E. A. Camargo, J. G. Tivang, T. C. Osborn

ABSTRACT

Restriction fragment length polymorphism (RFLP) and random amplified polymorphic DNA (RAPD) markers are being used widely for evaluating genetic relationships of crop germplasm. Differences in the properties of these two markers could result in different estimates of genetic relationships among some accessions. Nuclear RFLP markers detected by genomic DNA and cDNA clones and RAPD markers were compared for evaluating genetic relationships among 18 accessions from six cultivated Brassica species and one accession from Raphanus sativus. Based on comparisons of genetic-similarity matrices and cophenetic values, RAPD markers were very similar to RFLP markers for estimating intraspecific genetic relationships; however, the two marker types gave different results for interspecific genetic relationships. The presence of amplified mitochondrial and chloroplast DNA fragments in the RAPD data set did not appear to account for differences in RAPD- and RFLP-based dendrograms. However, hybridization tests of RAPD fragments with similar molecular weights demonstrated that some fragments, scored as identical, were not homologous. In all these cases, the differences occurred at the interspecific level. Our results suggest that RAPD data may be less reliable than RFLP data when estimating genetic relationships of accessions from more than one species. More... »

PAGES

973-980

References to SciGraph publications

  • 1992-01. Evaluation of restriction fragment length polymorphism in Cucumis melo in THEORETICAL AND APPLIED GENETICS
  • 1987-01. Identification of restriction fragment length polymorphisms linked to genes controlling soluble solids content in tomato fruit in THEORETICAL AND APPLIED GENETICS
  • 1990-04. Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs) in THEORETICAL AND APPLIED GENETICS
  • 1991-11. Isolation of molecular markers for tomato (L. esculentum) using random amplified polymorphic DNA (RAPD) in THEORETICAL AND APPLIED GENETICS
  • 1990-10. Genetic diversity for restriction fragment length polymorphisms and heterosis for two diallel sets of maize inbreds in THEORETICAL AND APPLIED GENETICS
  • 1992-09. Potential taxonomic use of random amplified polymorphic DNA (RAPD): a case study in Brassica in THEORETICAL AND APPLIED GENETICS
  • 1994-08. Genetic diversity of oilseedBrassica napus germ plasm based on restriction fragment length polymorphisms in THEORETICAL AND APPLIED GENETICS
  • 1990-10. RFLP analysis of phylogenetic relationships and genetic variation in the genus Lycopersicon in THEORETICAL AND APPLIED GENETICS
  • 1990-12. Similarities among a group of elite maize inbreds as measured by pedigree, F1 grain yield, grain yield, heterosis, and RFLPs in THEORETICAL AND APPLIED GENETICS
  • 1991-12. Identification of broccoli and cauliflower cultivars with RAPD markers in PLANT CELL REPORTS
  • 1988-05. Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs) in THEORETICAL AND APPLIED GENETICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/bf00220804

    DOI

    http://dx.doi.org/10.1007/bf00220804

    DIMENSIONS

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    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/24186250


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