Characterization of a family of Arabidopsis zinc finger protein cDNAs View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

1995-05

AUTHORS

Brian W. Tague, Howard M. Goodman

ABSTRACT

Work from animal systems indicates that C2H2 zinc finger proteins play an important role in development, and this is likely true for plant systems as well. To address this question we have used the sequence information from a previously isolated Arabidopsis thaliana C2H2 zinc finger protein gene to isolate additional cDNAs belonging to this gene family. While zinc finger genes isolated from other organisms encode multiple copies of this domain, the eight cDNAs isolated from Arabidopsis each contain only a single zinc finger. Outside of the finger region there is little sequence identity or similarity, although features characteristic of transcription factors are evident. While these genes are related, hybridization analysis indicates that each of them is a unique gene in the Arabidopsis genome. Analysis of mRNA demonstrates that the genes are expressed in different but overlapping sets of organs in the plant. These results are discussed in the light of recent analysis of zinc finger genes from other plant systems. More... »

PAGES

267-279

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/bf00020246

DOI

http://dx.doi.org/10.1007/bf00020246

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1035642263

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/7599312


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Amino Acid Sequence", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Arabidopsis", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Base Sequence", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Blotting, Northern", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Blotting, Southern", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Chromosome Mapping", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA, Complementary", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Gene Expression", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Gene Library", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genes, Plant", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genome, Plant", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Molecular Sequence Data", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Plant Proteins", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Selection, Genetic", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Sequence Analysis, DNA", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Sequence Homology, Amino Acid", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Tissue Distribution", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Zinc Fingers", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Department of Molecular Biology, Massachusetts General Hospital, 02114, Boston, MA, USA", 
          "id": "http://www.grid.ac/institutes/grid.32224.35", 
          "name": [
            "Department of Genetics, Harvard Medical School, 02114, Boston, MA, USA", 
            "Department of Molecular Biology, Massachusetts General Hospital, 02114, Boston, MA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Tague", 
        "givenName": "Brian W.", 
        "id": "sg:person.01304657060.50", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01304657060.50"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Molecular Biology, Massachusetts General Hospital, 02114, Boston, MA, USA", 
          "id": "http://www.grid.ac/institutes/grid.32224.35", 
          "name": [
            "Department of Genetics, Harvard Medical School, 02114, Boston, MA, USA", 
            "Department of Molecular Biology, Massachusetts General Hospital, 02114, Boston, MA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Goodman", 
        "givenName": "Howard M.", 
        "id": "sg:person.0605227220.62", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0605227220.62"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1038/336244a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022060119", 
          "https://doi.org/10.1038/336244a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf00290662", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043878867", 
          "https://doi.org/10.1007/bf00290662"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "1995-05", 
    "datePublishedReg": "1995-05-01", 
    "description": "Work from animal systems indicates that C2H2 zinc finger proteins play an important role in development, and this is likely true for plant systems as well. To address this question we have used the sequence information from a previously isolated Arabidopsis thaliana C2H2 zinc finger protein gene to isolate additional cDNAs belonging to this gene family. While zinc finger genes isolated from other organisms encode multiple copies of this domain, the eight cDNAs isolated from Arabidopsis each contain only a single zinc finger. Outside of the finger region there is little sequence identity or similarity, although features characteristic of transcription factors are evident. While these genes are related, hybridization analysis indicates that each of them is a unique gene in the Arabidopsis genome. Analysis of mRNA demonstrates that the genes are expressed in different but overlapping sets of organs in the plant. These results are discussed in the light of recent analysis of zinc finger genes from other plant systems.", 
    "genre": "article", 
    "id": "sg:pub.10.1007/bf00020246", 
    "inLanguage": "en", 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1101246", 
        "issn": [
          "0167-4412", 
          "1573-5028"
        ], 
        "name": "Plant Molecular Biology", 
        "publisher": "Springer Nature", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "2", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "28"
      }
    ], 
    "keywords": [
      "zinc finger gene", 
      "finger gene", 
      "C2H2 zinc finger protein gene", 
      "C2H2 zinc finger proteins", 
      "zinc finger protein gene", 
      "plant systems", 
      "finger protein gene", 
      "zinc finger protein", 
      "single zinc finger", 
      "little sequence identity", 
      "Arabidopsis genome", 
      "Analysis of mRNA", 
      "finger protein", 
      "unique genes", 
      "gene family", 
      "zinc finger", 
      "protein cDNA", 
      "transcription factors", 
      "protein gene", 
      "additional cDNAs", 
      "finger region", 
      "sequence identity", 
      "sequence information", 
      "animal systems", 
      "genes", 
      "hybridization analysis", 
      "multiple copies", 
      "cDNA", 
      "set of organs", 
      "Arabidopsis", 
      "recent analysis", 
      "important role", 
      "genome", 
      "family", 
      "organisms", 
      "plants", 
      "protein", 
      "mRNA", 
      "copies", 
      "domain", 
      "similarity", 
      "organs", 
      "role", 
      "analysis", 
      "contains", 
      "characterization", 
      "identity", 
      "region", 
      "development", 
      "light", 
      "factors", 
      "system", 
      "finger", 
      "features", 
      "results", 
      "information", 
      "set", 
      "questions", 
      "work"
    ], 
    "name": "Characterization of a family of Arabidopsis zinc finger protein cDNAs", 
    "pagination": "267-279", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1035642263"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/bf00020246"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "7599312"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/bf00020246", 
      "https://app.dimensions.ai/details/publication/pub.1035642263"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2022-05-10T09:48", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20220509/entities/gbq_results/article/article_270.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://doi.org/10.1007/bf00020246"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/bf00020246'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/bf00020246'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/bf00020246'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/bf00020246'


 

This table displays all metadata directly associated to this object as RDF triples.

209 TRIPLES      22 PREDICATES      106 URIs      96 LITERALS      25 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/bf00020246 schema:about N021ee5cdad5d4008939d0470df4c1a69
2 N02b33121774e4de1bdaeb2da5eaa3300
3 N02e46489f05e415bb3dc3a5981c2d027
4 N08b14c3f3f704460b572610222676050
5 N0f7d68d9f33d4bc29efa09f8a37e3370
6 N33480b5fbf7243fd8106353bfd353341
7 N50c3714a69894f37bb4a4850917a7274
8 N63bfddd280964b0ca96d814a6a12a722
9 N6873be5adfb546569e6c678c38a9ee75
10 N70be9fc08cb44e779451d37487dce557
11 N97f313be8ec645fb8fe6c22dddacb6ff
12 N9e69c5563eb54a78b69cbedb70cd1d31
13 Naf4db491f7d040c088f1e543dc0a1dc4
14 Nbce66d1d083a4dbfa75f79ae83759ab2
15 Nd1da58b69d664e15b33aad69ae5cebce
16 Nd490712dee914c4e9c9b2a08db8e6dce
17 Ndceb00aedceb49f985c719c689d846e6
18 Nfb8cce2ef6264282a94f04cdf4d91477
19 anzsrc-for:06
20 anzsrc-for:0604
21 schema:author N3ae64c9fdec34648b1d82d9748ca7f2b
22 schema:citation sg:pub.10.1007/bf00290662
23 sg:pub.10.1038/336244a0
24 schema:datePublished 1995-05
25 schema:datePublishedReg 1995-05-01
26 schema:description Work from animal systems indicates that C2H2 zinc finger proteins play an important role in development, and this is likely true for plant systems as well. To address this question we have used the sequence information from a previously isolated Arabidopsis thaliana C2H2 zinc finger protein gene to isolate additional cDNAs belonging to this gene family. While zinc finger genes isolated from other organisms encode multiple copies of this domain, the eight cDNAs isolated from Arabidopsis each contain only a single zinc finger. Outside of the finger region there is little sequence identity or similarity, although features characteristic of transcription factors are evident. While these genes are related, hybridization analysis indicates that each of them is a unique gene in the Arabidopsis genome. Analysis of mRNA demonstrates that the genes are expressed in different but overlapping sets of organs in the plant. These results are discussed in the light of recent analysis of zinc finger genes from other plant systems.
27 schema:genre article
28 schema:inLanguage en
29 schema:isAccessibleForFree false
30 schema:isPartOf N61c621c6d2154ae58a5e1f93e849ddd8
31 N7b5d3c260783407cb3d6b4958a2ab5c5
32 sg:journal.1101246
33 schema:keywords Analysis of mRNA
34 Arabidopsis
35 Arabidopsis genome
36 C2H2 zinc finger protein gene
37 C2H2 zinc finger proteins
38 additional cDNAs
39 analysis
40 animal systems
41 cDNA
42 characterization
43 contains
44 copies
45 development
46 domain
47 factors
48 family
49 features
50 finger
51 finger gene
52 finger protein
53 finger protein gene
54 finger region
55 gene family
56 genes
57 genome
58 hybridization analysis
59 identity
60 important role
61 information
62 light
63 little sequence identity
64 mRNA
65 multiple copies
66 organisms
67 organs
68 plant systems
69 plants
70 protein
71 protein cDNA
72 protein gene
73 questions
74 recent analysis
75 region
76 results
77 role
78 sequence identity
79 sequence information
80 set
81 set of organs
82 similarity
83 single zinc finger
84 system
85 transcription factors
86 unique genes
87 work
88 zinc finger
89 zinc finger gene
90 zinc finger protein
91 zinc finger protein gene
92 schema:name Characterization of a family of Arabidopsis zinc finger protein cDNAs
93 schema:pagination 267-279
94 schema:productId N1ef2f763931549c1bef02588964ed20c
95 N7727220fa6d1495cb5f5ad5b168cb0f1
96 Nd47b64cb0bb74181ac743a463c45266e
97 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035642263
98 https://doi.org/10.1007/bf00020246
99 schema:sdDatePublished 2022-05-10T09:48
100 schema:sdLicense https://scigraph.springernature.com/explorer/license/
101 schema:sdPublisher Nd73c1cf0e2dd49ebba7574c76d7d0dcf
102 schema:url https://doi.org/10.1007/bf00020246
103 sgo:license sg:explorer/license/
104 sgo:sdDataset articles
105 rdf:type schema:ScholarlyArticle
106 N021ee5cdad5d4008939d0470df4c1a69 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
107 schema:name Genome, Plant
108 rdf:type schema:DefinedTerm
109 N02b33121774e4de1bdaeb2da5eaa3300 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
110 schema:name Sequence Homology, Amino Acid
111 rdf:type schema:DefinedTerm
112 N02e46489f05e415bb3dc3a5981c2d027 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
113 schema:name Blotting, Southern
114 rdf:type schema:DefinedTerm
115 N08b14c3f3f704460b572610222676050 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
116 schema:name Tissue Distribution
117 rdf:type schema:DefinedTerm
118 N0f7d68d9f33d4bc29efa09f8a37e3370 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
119 schema:name Genes, Plant
120 rdf:type schema:DefinedTerm
121 N1ef2f763931549c1bef02588964ed20c schema:name pubmed_id
122 schema:value 7599312
123 rdf:type schema:PropertyValue
124 N33480b5fbf7243fd8106353bfd353341 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
125 schema:name Plant Proteins
126 rdf:type schema:DefinedTerm
127 N3ae64c9fdec34648b1d82d9748ca7f2b rdf:first sg:person.01304657060.50
128 rdf:rest Na0858500e4a44acbaebdf0b8750feb5a
129 N50c3714a69894f37bb4a4850917a7274 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
130 schema:name Blotting, Northern
131 rdf:type schema:DefinedTerm
132 N61c621c6d2154ae58a5e1f93e849ddd8 schema:issueNumber 2
133 rdf:type schema:PublicationIssue
134 N63bfddd280964b0ca96d814a6a12a722 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
135 schema:name Sequence Analysis, DNA
136 rdf:type schema:DefinedTerm
137 N6873be5adfb546569e6c678c38a9ee75 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
138 schema:name DNA, Complementary
139 rdf:type schema:DefinedTerm
140 N70be9fc08cb44e779451d37487dce557 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
141 schema:name Gene Expression
142 rdf:type schema:DefinedTerm
143 N7727220fa6d1495cb5f5ad5b168cb0f1 schema:name doi
144 schema:value 10.1007/bf00020246
145 rdf:type schema:PropertyValue
146 N7b5d3c260783407cb3d6b4958a2ab5c5 schema:volumeNumber 28
147 rdf:type schema:PublicationVolume
148 N97f313be8ec645fb8fe6c22dddacb6ff schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
149 schema:name Amino Acid Sequence
150 rdf:type schema:DefinedTerm
151 N9e69c5563eb54a78b69cbedb70cd1d31 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
152 schema:name Selection, Genetic
153 rdf:type schema:DefinedTerm
154 Na0858500e4a44acbaebdf0b8750feb5a rdf:first sg:person.0605227220.62
155 rdf:rest rdf:nil
156 Naf4db491f7d040c088f1e543dc0a1dc4 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
157 schema:name Gene Library
158 rdf:type schema:DefinedTerm
159 Nbce66d1d083a4dbfa75f79ae83759ab2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
160 schema:name Molecular Sequence Data
161 rdf:type schema:DefinedTerm
162 Nd1da58b69d664e15b33aad69ae5cebce schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
163 schema:name Arabidopsis
164 rdf:type schema:DefinedTerm
165 Nd47b64cb0bb74181ac743a463c45266e schema:name dimensions_id
166 schema:value pub.1035642263
167 rdf:type schema:PropertyValue
168 Nd490712dee914c4e9c9b2a08db8e6dce schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
169 schema:name Chromosome Mapping
170 rdf:type schema:DefinedTerm
171 Nd73c1cf0e2dd49ebba7574c76d7d0dcf schema:name Springer Nature - SN SciGraph project
172 rdf:type schema:Organization
173 Ndceb00aedceb49f985c719c689d846e6 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
174 schema:name Base Sequence
175 rdf:type schema:DefinedTerm
176 Nfb8cce2ef6264282a94f04cdf4d91477 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
177 schema:name Zinc Fingers
178 rdf:type schema:DefinedTerm
179 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
180 schema:name Biological Sciences
181 rdf:type schema:DefinedTerm
182 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
183 schema:name Genetics
184 rdf:type schema:DefinedTerm
185 sg:journal.1101246 schema:issn 0167-4412
186 1573-5028
187 schema:name Plant Molecular Biology
188 schema:publisher Springer Nature
189 rdf:type schema:Periodical
190 sg:person.01304657060.50 schema:affiliation grid-institutes:grid.32224.35
191 schema:familyName Tague
192 schema:givenName Brian W.
193 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01304657060.50
194 rdf:type schema:Person
195 sg:person.0605227220.62 schema:affiliation grid-institutes:grid.32224.35
196 schema:familyName Goodman
197 schema:givenName Howard M.
198 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0605227220.62
199 rdf:type schema:Person
200 sg:pub.10.1007/bf00290662 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043878867
201 https://doi.org/10.1007/bf00290662
202 rdf:type schema:CreativeWork
203 sg:pub.10.1038/336244a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022060119
204 https://doi.org/10.1038/336244a0
205 rdf:type schema:CreativeWork
206 grid-institutes:grid.32224.35 schema:alternateName Department of Molecular Biology, Massachusetts General Hospital, 02114, Boston, MA, USA
207 schema:name Department of Genetics, Harvard Medical School, 02114, Boston, MA, USA
208 Department of Molecular Biology, Massachusetts General Hospital, 02114, Boston, MA, USA
209 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...