Phylogenies without Branch Bounds: Contracting the Short, Pruning the Deep View Full Text


Ontology type: schema:Chapter      Open Access: True


Chapter Info

DATE

2009

AUTHORS

Constantinos Daskalakis , Elchanan Mossel , Sebastien Roch

ABSTRACT

We introduce a new phylogenetic reconstruction algorithm which, unlike most previous rigorous inference techniques, does not rely on assumptions regarding the branch lengths or the depth of the tree. The algorithm returns a forest which is guaranteed to contain all edges that are: 1) sufficiently long and 2) sufficiently close to the leaves. How much of the true tree is recovered depends on the sequence length provided. The algorithm is distance-based and runs in polynomial time. More... »

PAGES

451-465

References to SciGraph publications

  • 2006. Maximal Accurate Forests from Distance Matrices in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 1999-06. The Performance of Neighbor-Joining Methods of Phylogenetic Reconstruction in ALGORITHMICA
  • 1987-07. Computational complexity of inferring phylogenies from dissimilarity matrices in BULLETIN OF MATHEMATICAL BIOLOGY
  • 1999-03. Inverting random functions in ANNALS OF COMBINATORICS
  • Book

    TITLE

    Research in Computational Molecular Biology

    ISBN

    978-3-642-02007-0
    978-3-642-02008-7

    Author Affiliations

    Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/978-3-642-02008-7_32

    DOI

    http://dx.doi.org/10.1007/978-3-642-02008-7_32

    DIMENSIONS

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