Automated Analysis of siRNA Screens of Virus Infected Cells Based on Immunofluorescence Microscopy View Full Text


Ontology type: schema:Chapter      Open Access: True


Chapter Info

DATE

2008

AUTHORS

Petr Matula , Anil Kumar , Ilka Wörz , Nathalie Harder , Holger Erfle , Ralf Bartenschlager , Roland Eils , Karl Rohr

ABSTRACT

We present an image analysis approach as part of a high-throughput microscopy screening system based on cell arrays for the identification of genes involved in Hepatitis C and Dengue virus replication. Our approach comprises: cell nucleus segmentation, quantification of virus replication level in cells, localization of regions with transfected cells, cell classification by infection status, and quality assessment of an experiment. The approach is fully automatic and has been successfully applied to a large number of cell array images from screening experiments. The experimental results show a good agreement with the expected behavior of positive as well as negative controls and encourage the application to screens from further high-throughput experiments. More... »

PAGES

453-457

References to SciGraph publications

  • 2006. Automated Analysis of the Mitotic Phases of Human Cells in 3D Fluorescence Microscopy Image Sequences in MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION – MICCAI 2006
  • Book

    TITLE

    Bildverarbeitung für die Medizin 2008

    ISBN

    978-3-540-78639-9
    978-3-540-78640-5

    Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/978-3-540-78640-5_91

    DOI

    http://dx.doi.org/10.1007/978-3-540-78640-5_91

    DIMENSIONS

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