Ontology type: schema:Chapter
2007
AUTHORSMaria Mirto , Ivan Rossi , Italo Epicoco , Sandro Fiore , Piero Fariselli , Rita Casadio , Giovanni Aloisio
ABSTRACTBioinformatics applications are naturally distributed, due to distribution of involved data sets, experimental data and biological databases. They require high computing power, owing to the large size of data sets and the complexity of basic computations, may access heterogeneous data, where heterogeneity is in data format, access policy, distribution, etc., and require a secure infrastructure, because they could access private data owned by different organizations. The Problem Solving Environment (PSE) is an approach and a technology that can fulfil such bioinformatics requirements. The PSE can be used for the definition and composition of complex applications, hiding programming and configuration details to the user that can concentrate only on the specific problem. Moreover, Grids can be used for building geographically distributed collaborative problem solving environments and Grid aware PSEs can search and use dispersed high performance computing, networking, and data resources. In this work, the PSE solution has been chosen as the integration platform of bioinformatics tools and data sources. In particular an experiment of multiple sequence alignment on large scale, supported by the LIBI PSE, is presented. More... »
PAGES414-423
Frontiers of High Performance Computing and Networking ISPA 2007 Workshops
ISBN
978-3-540-74766-6
978-3-540-74767-3
http://scigraph.springernature.com/pub.10.1007/978-3-540-74767-3_43
DOIhttp://dx.doi.org/10.1007/978-3-540-74767-3_43
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1033355631
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0806",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Information Systems",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/08",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Information and Computing Sciences",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "University of Salento",
"id": "https://www.grid.ac/institutes/grid.9906.6",
"name": [
"SPACI Consortium & ISUFI University of Salento, Lecce & CACT of NNL/CNR-INFM,"
],
"type": "Organization"
},
"familyName": "Mirto",
"givenName": "Maria",
"id": "sg:person.013367070743.12",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013367070743.12"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Bologna",
"id": "https://www.grid.ac/institutes/grid.6292.f",
"name": [
"Biocomputing Group, University of Bologna, Italy"
],
"type": "Organization"
},
"familyName": "Rossi",
"givenName": "Ivan",
"id": "sg:person.0777207300.02",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0777207300.02"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Salento",
"id": "https://www.grid.ac/institutes/grid.9906.6",
"name": [
"SPACI Consortium & ISUFI University of Salento, Lecce & CACT of NNL/CNR-INFM,"
],
"type": "Organization"
},
"familyName": "Epicoco",
"givenName": "Italo",
"id": "sg:person.016454610176.50",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016454610176.50"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Salento",
"id": "https://www.grid.ac/institutes/grid.9906.6",
"name": [
"SPACI Consortium & ISUFI University of Salento, Lecce & CACT of NNL/CNR-INFM,"
],
"type": "Organization"
},
"familyName": "Fiore",
"givenName": "Sandro",
"id": "sg:person.012124422153.81",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012124422153.81"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Bologna",
"id": "https://www.grid.ac/institutes/grid.6292.f",
"name": [
"Biocomputing Group, University of Bologna, Italy"
],
"type": "Organization"
},
"familyName": "Fariselli",
"givenName": "Piero",
"id": "sg:person.01347332413.06",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01347332413.06"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Bologna",
"id": "https://www.grid.ac/institutes/grid.6292.f",
"name": [
"Biocomputing Group, University of Bologna, Italy"
],
"type": "Organization"
},
"familyName": "Casadio",
"givenName": "Rita",
"id": "sg:person.0675702613.15",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0675702613.15"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Salento",
"id": "https://www.grid.ac/institutes/grid.9906.6",
"name": [
"SPACI Consortium & ISUFI University of Salento, Lecce & CACT of NNL/CNR-INFM,"
],
"type": "Organization"
},
"familyName": "Aloisio",
"givenName": "Giovanni",
"id": "sg:person.010013573543.47",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010013573543.47"
],
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1002/cpe.1131",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1009416071"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/11577188_2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012362896",
"https://doi.org/10.1007/11577188_2"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/11577188_2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012362896",
"https://doi.org/10.1007/11577188_2"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/jcc.20291",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013759612"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/jcc.20291",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013759612"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/prot.340230304",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015586652"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/prot.340230304",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015586652"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkg548",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021369502"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gki070",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022267696"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0927-5452(05)80009-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035884078"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btg180",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036252078"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/25.17.3389",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047265454"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/3-540-44681-8_116",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053252370",
"https://doi.org/10.1007/3-540-44681-8_116"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1109/mcse.1997.615427",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1061397870"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1109/hicss.2001.927223",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1094374264"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1109/itcc.2005.273",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1095023219"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/0470867167",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1109698647"
],
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1109698647",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1109698647",
"type": "CreativeWork"
}
],
"datePublished": "2007",
"datePublishedReg": "2007-01-01",
"description": "Bioinformatics applications are naturally distributed, due to distribution of involved data sets, experimental data and biological databases. They require high computing power, owing to the large size of data sets and the complexity of basic computations, may access heterogeneous data, where heterogeneity is in data format, access policy, distribution, etc., and require a secure infrastructure, because they could access private data owned by different organizations. The Problem Solving Environment (PSE) is an approach and a technology that can fulfil such bioinformatics requirements. The PSE can be used for the definition and composition of complex applications, hiding programming and configuration details to the user that can concentrate only on the specific problem. Moreover, Grids can be used for building geographically distributed collaborative problem solving environments and Grid aware PSEs can search and use dispersed high performance computing, networking, and data resources. In this work, the PSE solution has been chosen as the integration platform of bioinformatics tools and data sources. In particular an experiment of multiple sequence alignment on large scale, supported by the LIBI PSE, is presented.",
"editor": [
{
"familyName": "Thulasiraman",
"givenName": "Parimala",
"type": "Person"
},
{
"familyName": "He",
"givenName": "Xubin",
"type": "Person"
},
{
"familyName": "Xu",
"givenName": "Tony Li",
"type": "Person"
},
{
"familyName": "Denko",
"givenName": "Mieso K.",
"type": "Person"
},
{
"familyName": "Thulasiram",
"givenName": "Ruppa K.",
"type": "Person"
},
{
"familyName": "Yang",
"givenName": "Laurence T.",
"type": "Person"
}
],
"genre": "chapter",
"id": "sg:pub.10.1007/978-3-540-74767-3_43",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isPartOf": {
"isbn": [
"978-3-540-74766-6",
"978-3-540-74767-3"
],
"name": "Frontiers of High Performance Computing and Networking ISPA 2007 Workshops",
"type": "Book"
},
"name": "High Throughput Protein Similarity Searches in the LIBI Grid Problem Solving Environment",
"pagination": "414-423",
"productId": [
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/978-3-540-74767-3_43"
]
},
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"9ee68ed39115bb5d9b2515298b3749116e91848785dca47f0b42d1ab89fe4394"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1033355631"
]
}
],
"publisher": {
"location": "Berlin, Heidelberg",
"name": "Springer Berlin Heidelberg",
"type": "Organisation"
},
"sameAs": [
"https://doi.org/10.1007/978-3-540-74767-3_43",
"https://app.dimensions.ai/details/publication/pub.1033355631"
],
"sdDataset": "chapters",
"sdDatePublished": "2019-04-15T11:12",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8659_00000589.jsonl",
"type": "Chapter",
"url": "http://link.springer.com/10.1007/978-3-540-74767-3_43"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/978-3-540-74767-3_43'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/978-3-540-74767-3_43'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/978-3-540-74767-3_43'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/978-3-540-74767-3_43'
This table displays all metadata directly associated to this object as RDF triples.
181 TRIPLES
23 PREDICATES
42 URIs
20 LITERALS
8 BLANK NODES