Efficient Generation of Uniform Samples from Phylogenetic Trees View Full Text


Ontology type: schema:Chapter     


Chapter Info

DATE

2003

AUTHORS

Paul Kearney , J. Ian Munro , Derek Phillips

ABSTRACT

In this paper, we introduce new algorithms for selecting taxon (leaf) samples from large phylogenetic trees, uniformly at random, under certain biologically relevant constraints on the taxa. All the algorithms run in polynomial time and have been implemented. The algorithms have direct applications to the evaluation of phylogenetic tree and supertree construction methods using biologically curated data. We also relate one of the sampling problems to the well-known clique problem on undirected graphs. From this, we obtain an interesting new class of graphs for which many open problems exist. More... »

PAGES

177-189

Book

TITLE

Algorithms in Bioinformatics

ISBN

978-3-540-20076-5
978-3-540-39763-2

Author Affiliations

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/978-3-540-39763-2_14

DOI

http://dx.doi.org/10.1007/978-3-540-39763-2_14

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1001248165


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