Structural Analysis of Long Single-Stranded RNA Molecules with Atomic Force Microscopy Imaging View Full Text


Ontology type: schema:Chapter     


Chapter Info

DATE

2017

AUTHORS

Jamie L. Gilmore , Aiko Yoshida , Katashi Deguchi , Suguru Asai , Hideki Aizaki , Masahiro Kumeta , Kiwamu Hyodo , Tetsuro Okuno , Takaji Wakita , Kunio Takeyasu

ABSTRACT

Characterization of the structure of long RNA molecules (>1 kb) is usually a time-consuming and tedious process. In this study, we have developed an imaging procedure for obtaining images of the extended secondary structures of long RNA molecules combined with automated MATLAB-based data processing algorithms for identification of the domain architecture of the molecules in these images. These algorithms include a molecule autoselection procedure based on height and area thresholding, a morphological thinning procedure to generate skeletons of the molecule in order to analyze the branched structure of the molecules, and a procedure to generate local volume profiles along the main chain of the molecule for identification of domains and prediction of the number of nucleotides comprising each domain. The single-molecule nature of this technique also allows for the identification of varying conformations of the molecule and assessment of the conformational flexibility of the identified domain organization. More... »

PAGES

3-9

References to SciGraph publications

Book

TITLE

3rd International Multidisciplinary Microscopy and Microanalysis Congress (InterM)

ISBN

978-3-319-46600-2
978-3-319-46601-9

Author Affiliations

From Grant

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/978-3-319-46601-9_1

DOI

http://dx.doi.org/10.1007/978-3-319-46601-9_1

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