Ultrastructural Insights into Microbial Life at the Hydrocarbon/Aqueous Environment Interface View Full Text


Ontology type: schema:Chapter     


Chapter Info

DATE

2017-11-14

AUTHORS

Nassim Ataii , Tyne McHugh , Junha Song , Armaity Nasarabadi , Manfred Auer

ABSTRACT

Despite the harmful effects observed when bacteria grow in a hydrocarbon-rich environment, some have been able to overcome the potential toxicity; however, specific interactions that operate at the hydrocarbon/aqueous interface remain unknown due to the difficulty of studying these interactions. Fortunately, there have been vast improvements in sample preparation such as the introduction of high-pressure freezing/freeze substitution (HPF/FS) which are able to preserve the ultrastructure while imaging. This process has been a gateway to a greater understanding of the ultrastructure of these interactions which could present deeper insight into the many processes that involve hydrocarbons. These processes include events such as catastrophic oil spills that give the opportunity to study the hydrocarbon/aqueous interface for the potential of utilizing new mechanisms in future disasters. This follows the possibility of reducing industrial oil souring by studying sulfate-producing bacterium, as well as furthering our understanding in biofuel production, where engineered microbes are used to produce hydrocarbon fuels. More... »

PAGES

1-10

Book

TITLE

Cellular Ecophysiology of Microbe

ISBN

978-3-319-20796-4
978-3-319-20796-4

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/978-3-319-20796-4_11-1

DOI

http://dx.doi.org/10.1007/978-3-319-20796-4_11-1

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1099698274


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0605", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Microbiology", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory", 
          "id": "http://www.grid.ac/institutes/None", 
          "name": [
            "Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Ataii", 
        "givenName": "Nassim", 
        "id": "sg:person.012033624234.50", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012033624234.50"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory", 
          "id": "http://www.grid.ac/institutes/None", 
          "name": [
            "Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory"
          ], 
          "type": "Organization"
        }, 
        "familyName": "McHugh", 
        "givenName": "Tyne", 
        "id": "sg:person.012631204634.05", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012631204634.05"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory", 
          "id": "http://www.grid.ac/institutes/None", 
          "name": [
            "Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Song", 
        "givenName": "Junha", 
        "id": "sg:person.013426565234.45", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013426565234.45"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory", 
          "id": "http://www.grid.ac/institutes/None", 
          "name": [
            "Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Nasarabadi", 
        "givenName": "Armaity", 
        "id": "sg:person.016003037506.17", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016003037506.17"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory", 
          "id": "http://www.grid.ac/institutes/None", 
          "name": [
            "Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Auer", 
        "givenName": "Manfred", 
        "id": "sg:person.0652233644.88", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0652233644.88"
        ], 
        "type": "Person"
      }
    ], 
    "datePublished": "2017-11-14", 
    "datePublishedReg": "2017-11-14", 
    "description": "Despite the harmful effects observed when bacteria grow in a hydrocarbon-rich environment, some have been able to overcome the potential toxicity; however, specific interactions that operate at the hydrocarbon/aqueous interface remain unknown due to the difficulty of studying these interactions. Fortunately, there have been vast improvements in sample preparation such as the introduction of high-pressure freezing/freeze substitution (HPF/FS) which are able to preserve the ultrastructure while imaging. This process has been a gateway to a greater understanding of the ultrastructure of these interactions which could present deeper insight into the many processes that involve hydrocarbons. These processes include events such as catastrophic oil spills that give the opportunity to study the hydrocarbon/aqueous interface for the potential of utilizing new mechanisms in future disasters. This follows the possibility of reducing industrial oil souring by studying sulfate-producing bacterium, as well as furthering our understanding in biofuel production, where engineered microbes are used to produce hydrocarbon fuels.", 
    "editor": [
      {
        "familyName": "Krell", 
        "givenName": "Tino", 
        "type": "Person"
      }
    ], 
    "genre": "chapter", 
    "id": "sg:pub.10.1007/978-3-319-20796-4_11-1", 
    "inLanguage": "en", 
    "isAccessibleForFree": false, 
    "isPartOf": {
      "isbn": [
        "978-3-319-20796-4", 
        "978-3-319-20796-4"
      ], 
      "name": "Cellular Ecophysiology of Microbe", 
      "type": "Book"
    }, 
    "keywords": [
      "aqueous interface", 
      "hydrocarbon fuels", 
      "catastrophic oil spills", 
      "industrial oils", 
      "interface", 
      "hydrocarbon-rich environments", 
      "sample preparation", 
      "oil spill", 
      "biofuel production", 
      "fuel", 
      "specific interactions", 
      "potential toxicity", 
      "process", 
      "vast improvement", 
      "oil", 
      "deeper insight", 
      "environment interface", 
      "hydrocarbons", 
      "spill", 
      "interaction", 
      "preparation", 
      "substitution", 
      "improvement", 
      "new mechanism", 
      "environment", 
      "potential", 
      "production", 
      "effect", 
      "disasters", 
      "high-pressure freezing/freeze substitution", 
      "possibility", 
      "harmful effects", 
      "insights", 
      "toxicity", 
      "microbial life", 
      "mechanism", 
      "introduction", 
      "freeze substitution", 
      "gateway", 
      "future disasters", 
      "understanding", 
      "difficulties", 
      "microbes", 
      "life", 
      "bacteria", 
      "ultrastructural insights", 
      "opportunities", 
      "greater understanding", 
      "events", 
      "bacterium", 
      "ultrastructure", 
      "hydrocarbon/aqueous interface", 
      "freezing/freeze substitution", 
      "sulfate-producing bacterium", 
      "Hydrocarbon/Aqueous Environment Interface", 
      "Aqueous Environment Interface"
    ], 
    "name": "Ultrastructural Insights into Microbial Life at the Hydrocarbon/Aqueous Environment Interface", 
    "pagination": "1-10", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1099698274"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/978-3-319-20796-4_11-1"
        ]
      }
    ], 
    "publisher": {
      "name": "Springer Nature", 
      "type": "Organisation"
    }, 
    "sameAs": [
      "https://doi.org/10.1007/978-3-319-20796-4_11-1", 
      "https://app.dimensions.ai/details/publication/pub.1099698274"
    ], 
    "sdDataset": "chapters", 
    "sdDatePublished": "2022-01-01T19:14", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20220101/entities/gbq_results/chapter/chapter_255.jsonl", 
    "type": "Chapter", 
    "url": "https://doi.org/10.1007/978-3-319-20796-4_11-1"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/978-3-319-20796-4_11-1'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/978-3-319-20796-4_11-1'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/978-3-319-20796-4_11-1'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/978-3-319-20796-4_11-1'


 

This table displays all metadata directly associated to this object as RDF triples.

143 TRIPLES      23 PREDICATES      81 URIs      74 LITERALS      7 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/978-3-319-20796-4_11-1 schema:about anzsrc-for:06
2 anzsrc-for:0605
3 schema:author N8556f96ec1404dfc9f0600a2ba51112d
4 schema:datePublished 2017-11-14
5 schema:datePublishedReg 2017-11-14
6 schema:description Despite the harmful effects observed when bacteria grow in a hydrocarbon-rich environment, some have been able to overcome the potential toxicity; however, specific interactions that operate at the hydrocarbon/aqueous interface remain unknown due to the difficulty of studying these interactions. Fortunately, there have been vast improvements in sample preparation such as the introduction of high-pressure freezing/freeze substitution (HPF/FS) which are able to preserve the ultrastructure while imaging. This process has been a gateway to a greater understanding of the ultrastructure of these interactions which could present deeper insight into the many processes that involve hydrocarbons. These processes include events such as catastrophic oil spills that give the opportunity to study the hydrocarbon/aqueous interface for the potential of utilizing new mechanisms in future disasters. This follows the possibility of reducing industrial oil souring by studying sulfate-producing bacterium, as well as furthering our understanding in biofuel production, where engineered microbes are used to produce hydrocarbon fuels.
7 schema:editor N570bf6cb8d7544a6ba91b91b766923a0
8 schema:genre chapter
9 schema:inLanguage en
10 schema:isAccessibleForFree false
11 schema:isPartOf N9dd8ba1b7be94cfaa2d4921283206c7d
12 schema:keywords Aqueous Environment Interface
13 Hydrocarbon/Aqueous Environment Interface
14 aqueous interface
15 bacteria
16 bacterium
17 biofuel production
18 catastrophic oil spills
19 deeper insight
20 difficulties
21 disasters
22 effect
23 environment
24 environment interface
25 events
26 freeze substitution
27 freezing/freeze substitution
28 fuel
29 future disasters
30 gateway
31 greater understanding
32 harmful effects
33 high-pressure freezing/freeze substitution
34 hydrocarbon fuels
35 hydrocarbon-rich environments
36 hydrocarbon/aqueous interface
37 hydrocarbons
38 improvement
39 industrial oils
40 insights
41 interaction
42 interface
43 introduction
44 life
45 mechanism
46 microbes
47 microbial life
48 new mechanism
49 oil
50 oil spill
51 opportunities
52 possibility
53 potential
54 potential toxicity
55 preparation
56 process
57 production
58 sample preparation
59 specific interactions
60 spill
61 substitution
62 sulfate-producing bacterium
63 toxicity
64 ultrastructural insights
65 ultrastructure
66 understanding
67 vast improvement
68 schema:name Ultrastructural Insights into Microbial Life at the Hydrocarbon/Aqueous Environment Interface
69 schema:pagination 1-10
70 schema:productId N320833ad6f044e14b9fa8d5455351820
71 N406ff6bae8784d1ba3f985684ef71bf5
72 schema:publisher N69d7159f488b4f32bd9bf95a1cdc1b30
73 schema:sameAs https://app.dimensions.ai/details/publication/pub.1099698274
74 https://doi.org/10.1007/978-3-319-20796-4_11-1
75 schema:sdDatePublished 2022-01-01T19:14
76 schema:sdLicense https://scigraph.springernature.com/explorer/license/
77 schema:sdPublisher N0c21fd81ce544602a330a25a6e260d3c
78 schema:url https://doi.org/10.1007/978-3-319-20796-4_11-1
79 sgo:license sg:explorer/license/
80 sgo:sdDataset chapters
81 rdf:type schema:Chapter
82 N046eafb6b5f840b78198d98911e9c549 rdf:first sg:person.012631204634.05
83 rdf:rest Ne8293326ed524234b014d976065622f6
84 N0c21fd81ce544602a330a25a6e260d3c schema:name Springer Nature - SN SciGraph project
85 rdf:type schema:Organization
86 N320833ad6f044e14b9fa8d5455351820 schema:name dimensions_id
87 schema:value pub.1099698274
88 rdf:type schema:PropertyValue
89 N406ff6bae8784d1ba3f985684ef71bf5 schema:name doi
90 schema:value 10.1007/978-3-319-20796-4_11-1
91 rdf:type schema:PropertyValue
92 N570bf6cb8d7544a6ba91b91b766923a0 rdf:first Nd083e48a909247f6a923a2096cbe75dd
93 rdf:rest rdf:nil
94 N69d7159f488b4f32bd9bf95a1cdc1b30 schema:name Springer Nature
95 rdf:type schema:Organisation
96 N8556f96ec1404dfc9f0600a2ba51112d rdf:first sg:person.012033624234.50
97 rdf:rest N046eafb6b5f840b78198d98911e9c549
98 N9dd8ba1b7be94cfaa2d4921283206c7d schema:isbn 978-3-319-20796-4
99 schema:name Cellular Ecophysiology of Microbe
100 rdf:type schema:Book
101 Nd083e48a909247f6a923a2096cbe75dd schema:familyName Krell
102 schema:givenName Tino
103 rdf:type schema:Person
104 Ndda4b48148bd4659b7da1ee3823b429e rdf:first sg:person.016003037506.17
105 rdf:rest Nf87ac59c6a584c0f958b00d2b7c0e1bf
106 Ne8293326ed524234b014d976065622f6 rdf:first sg:person.013426565234.45
107 rdf:rest Ndda4b48148bd4659b7da1ee3823b429e
108 Nf87ac59c6a584c0f958b00d2b7c0e1bf rdf:first sg:person.0652233644.88
109 rdf:rest rdf:nil
110 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
111 schema:name Biological Sciences
112 rdf:type schema:DefinedTerm
113 anzsrc-for:0605 schema:inDefinedTermSet anzsrc-for:
114 schema:name Microbiology
115 rdf:type schema:DefinedTerm
116 sg:person.012033624234.50 schema:affiliation grid-institutes:None
117 schema:familyName Ataii
118 schema:givenName Nassim
119 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012033624234.50
120 rdf:type schema:Person
121 sg:person.012631204634.05 schema:affiliation grid-institutes:None
122 schema:familyName McHugh
123 schema:givenName Tyne
124 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012631204634.05
125 rdf:type schema:Person
126 sg:person.013426565234.45 schema:affiliation grid-institutes:None
127 schema:familyName Song
128 schema:givenName Junha
129 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013426565234.45
130 rdf:type schema:Person
131 sg:person.016003037506.17 schema:affiliation grid-institutes:None
132 schema:familyName Nasarabadi
133 schema:givenName Armaity
134 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016003037506.17
135 rdf:type schema:Person
136 sg:person.0652233644.88 schema:affiliation grid-institutes:None
137 schema:familyName Auer
138 schema:givenName Manfred
139 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0652233644.88
140 rdf:type schema:Person
141 grid-institutes:None schema:alternateName Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory
142 schema:name Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory
143 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...