Predicting RNA Secondary Structures: One-grammar-fits-all Solution View Full Text


Ontology type: schema:Chapter     


Chapter Info

DATE

2015

AUTHORS

Menglu Li , Micheal Cheng , Yongtao Ye , Wk Hon , Hf Ting , Tw Lam , Cy Tang , Thomas Wong , Sm Yiu

ABSTRACT

RNA secondary structures are known to be important in many biological processes. Many available programs have been developed for RNA secondary structure prediction. Based on our knowledge, however, there still exist secondary structures of known RNA sequences which cannot be covered by these algorithms. In this paper, we provide an efficient algorithm that can handle all RNA secondary structures found in Rfam database. We designed a new stochastic context-free grammar named Rectangle Tree Grammar (RTG) which significantly expands the classes of structures that can be modelled. Our algorithm runs in O(n 6) time and the accuracy is reasonably high, with average PPV and sensitivity over 75%. In addition, the structures that RTG predicts are very similar to the real ones. More... »

PAGES

211-222

Book

TITLE

Bioinformatics Research and Applications

ISBN

978-3-319-19047-1
978-3-319-19048-8

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/978-3-319-19048-8_18

DOI

http://dx.doi.org/10.1007/978-3-319-19048-8_18

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1005986908


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0806", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Information Systems", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/08", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Information and Computing Sciences", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "University of Hong Kong", 
          "id": "https://www.grid.ac/institutes/grid.194645.b", 
          "name": [
            "Department of Computer Science, The University of Hong Kong, Hong Kong, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Li", 
        "givenName": "Menglu", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "National Tsing Hua University", 
          "id": "https://www.grid.ac/institutes/grid.38348.34", 
          "name": [
            "Department of Computer Science, National Tsinghua University, Hsinchu City, Taiwan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Cheng", 
        "givenName": "Micheal", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Hong Kong", 
          "id": "https://www.grid.ac/institutes/grid.194645.b", 
          "name": [
            "Department of Computer Science, The University of Hong Kong, Hong Kong, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Ye", 
        "givenName": "Yongtao", 
        "id": "sg:person.0745752441.12", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0745752441.12"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "National Tsing Hua University", 
          "id": "https://www.grid.ac/institutes/grid.38348.34", 
          "name": [
            "Department of Computer Science, National Tsinghua University, Hsinchu City, Taiwan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Hon", 
        "givenName": "Wk", 
        "id": "sg:person.07456324600.70", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07456324600.70"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Hong Kong", 
          "id": "https://www.grid.ac/institutes/grid.194645.b", 
          "name": [
            "Department of Computer Science, The University of Hong Kong, Hong Kong, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Ting", 
        "givenName": "Hf", 
        "id": "sg:person.01243611107.92", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01243611107.92"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Hong Kong", 
          "id": "https://www.grid.ac/institutes/grid.194645.b", 
          "name": [
            "Department of Computer Science, The University of Hong Kong, Hong Kong, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Lam", 
        "givenName": "Tw", 
        "id": "sg:person.010351235467.44", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010351235467.44"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "National Tsing Hua University", 
          "id": "https://www.grid.ac/institutes/grid.38348.34", 
          "name": [
            "Department of Computer Science, National Tsinghua University, Hsinchu City, Taiwan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Tang", 
        "givenName": "Cy", 
        "id": "sg:person.01312526135.27", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01312526135.27"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Ecosystem Sciences", 
          "id": "https://www.grid.ac/institutes/grid.417653.2", 
          "name": [
            "CSIRO Ecosystem Sciences, Canberra, Australia"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Wong", 
        "givenName": "Thomas", 
        "id": "sg:person.01275354546.73", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01275354546.73"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Hong Kong", 
          "id": "https://www.grid.ac/institutes/grid.194645.b", 
          "name": [
            "Department of Computer Science, The University of Hong Kong, Hong Kong, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Yiu", 
        "givenName": "Sm", 
        "id": "sg:person.07731552573.20", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07731552573.20"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1186/1471-2105-12-108", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000550509", 
          "https://doi.org/10.1186/1471-2105-12-108"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1006/jmbi.2000.3668", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1004795216"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/jcc.21596", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007853236"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btn601", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011898458"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0166-218x(00)00186-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017648794"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btg1007", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020982524"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-9-33", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023306749", 
          "https://doi.org/10.1186/1471-2105-9-33"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-9-33", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023306749", 
          "https://doi.org/10.1186/1471-2105-9-33"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkq432", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025601142"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkq432", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025601142"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0304-3975(98)00090-5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026113255"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkm258", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028222543"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1006/jmbi.1998.2436", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030245324"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1261/rna.7284905", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030613163"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1006/jmbi.1997.1092", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1033436235"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gki081", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036286749"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/978-3-540-27836-8_77", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1040931510", 
          "https://doi.org/10.1007/978-3-540-27836-8_77"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-9-474", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1041611297", 
          "https://doi.org/10.1186/1471-2105-9-474"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0092-8674(89)90124-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042582426"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btr090", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049095163"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/jcc.10296", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051970143"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/bi00162a001", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055163272"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1089/106652700750050862", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1059204856"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1089/cmb.2008.0219", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1059245741"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1089/cmb.2011.0184", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1059246064"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2015", 
    "datePublishedReg": "2015-01-01", 
    "description": "RNA secondary structures are known to be important in many biological processes. Many available programs have been developed for RNA secondary structure prediction. Based on our knowledge, however, there still exist secondary structures of known RNA sequences which cannot be covered by these algorithms. In this paper, we provide an efficient algorithm that can handle all RNA secondary structures found in Rfam database. We designed a new stochastic context-free grammar named Rectangle Tree Grammar (RTG) which significantly expands the classes of structures that can be modelled. Our algorithm runs in O(n 6) time and the accuracy is reasonably high, with average PPV and sensitivity over 75%. In addition, the structures that RTG predicts are very similar to the real ones.", 
    "editor": [
      {
        "familyName": "Harrison", 
        "givenName": "Robert", 
        "type": "Person"
      }, 
      {
        "familyName": "Li", 
        "givenName": "Yaohang", 
        "type": "Person"
      }, 
      {
        "familyName": "M\u0103ndoiu", 
        "givenName": "Ion", 
        "type": "Person"
      }
    ], 
    "genre": "chapter", 
    "id": "sg:pub.10.1007/978-3-319-19048-8_18", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isPartOf": {
      "isbn": [
        "978-3-319-19047-1", 
        "978-3-319-19048-8"
      ], 
      "name": "Bioinformatics Research and Applications", 
      "type": "Book"
    }, 
    "name": "Predicting RNA Secondary Structures: One-grammar-fits-all Solution", 
    "pagination": "211-222", 
    "productId": [
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/978-3-319-19048-8_18"
        ]
      }, 
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "1c849b62199c84e3ce72bd767f09c81d244526799a55968c6762d879c7456f3e"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1005986908"
        ]
      }
    ], 
    "publisher": {
      "location": "Cham", 
      "name": "Springer International Publishing", 
      "type": "Organisation"
    }, 
    "sameAs": [
      "https://doi.org/10.1007/978-3-319-19048-8_18", 
      "https://app.dimensions.ai/details/publication/pub.1005986908"
    ], 
    "sdDataset": "chapters", 
    "sdDatePublished": "2019-04-15T10:30", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8659_00000246.jsonl", 
    "type": "Chapter", 
    "url": "http://link.springer.com/10.1007/978-3-319-19048-8_18"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/978-3-319-19048-8_18'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/978-3-319-19048-8_18'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/978-3-319-19048-8_18'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/978-3-319-19048-8_18'


 

This table displays all metadata directly associated to this object as RDF triples.

208 TRIPLES      23 PREDICATES      50 URIs      20 LITERALS      8 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/978-3-319-19048-8_18 schema:about anzsrc-for:08
2 anzsrc-for:0806
3 schema:author N227605c882344b37ad41d049b832586c
4 schema:citation sg:pub.10.1007/978-3-540-27836-8_77
5 sg:pub.10.1186/1471-2105-12-108
6 sg:pub.10.1186/1471-2105-9-33
7 sg:pub.10.1186/1471-2105-9-474
8 https://doi.org/10.1002/jcc.10296
9 https://doi.org/10.1002/jcc.21596
10 https://doi.org/10.1006/jmbi.1997.1092
11 https://doi.org/10.1006/jmbi.1998.2436
12 https://doi.org/10.1006/jmbi.2000.3668
13 https://doi.org/10.1016/0092-8674(89)90124-4
14 https://doi.org/10.1016/s0166-218x(00)00186-4
15 https://doi.org/10.1016/s0304-3975(98)00090-5
16 https://doi.org/10.1021/bi00162a001
17 https://doi.org/10.1089/106652700750050862
18 https://doi.org/10.1089/cmb.2008.0219
19 https://doi.org/10.1089/cmb.2011.0184
20 https://doi.org/10.1093/bioinformatics/btg1007
21 https://doi.org/10.1093/bioinformatics/btn601
22 https://doi.org/10.1093/bioinformatics/btr090
23 https://doi.org/10.1093/nar/gki081
24 https://doi.org/10.1093/nar/gkm258
25 https://doi.org/10.1093/nar/gkq432
26 https://doi.org/10.1261/rna.7284905
27 schema:datePublished 2015
28 schema:datePublishedReg 2015-01-01
29 schema:description RNA secondary structures are known to be important in many biological processes. Many available programs have been developed for RNA secondary structure prediction. Based on our knowledge, however, there still exist secondary structures of known RNA sequences which cannot be covered by these algorithms. In this paper, we provide an efficient algorithm that can handle all RNA secondary structures found in Rfam database. We designed a new stochastic context-free grammar named Rectangle Tree Grammar (RTG) which significantly expands the classes of structures that can be modelled. Our algorithm runs in O(n 6) time and the accuracy is reasonably high, with average PPV and sensitivity over 75%. In addition, the structures that RTG predicts are very similar to the real ones.
30 schema:editor N4b072b2eaa124e3c8beca6f797abfe83
31 schema:genre chapter
32 schema:inLanguage en
33 schema:isAccessibleForFree false
34 schema:isPartOf N183787115fb24b0a8160534410e06e66
35 schema:name Predicting RNA Secondary Structures: One-grammar-fits-all Solution
36 schema:pagination 211-222
37 schema:productId N233530f8278c4d339cd90de50e313b58
38 N67a714c4e3fd41a2a5b6bf4895062a8e
39 Nbec6b2d2364049ebb5a87a258bba38e0
40 schema:publisher N3052185108e44367810f655bd375abe4
41 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005986908
42 https://doi.org/10.1007/978-3-319-19048-8_18
43 schema:sdDatePublished 2019-04-15T10:30
44 schema:sdLicense https://scigraph.springernature.com/explorer/license/
45 schema:sdPublisher Nee77927efe1d4824a8d69f3da37f156f
46 schema:url http://link.springer.com/10.1007/978-3-319-19048-8_18
47 sgo:license sg:explorer/license/
48 sgo:sdDataset chapters
49 rdf:type schema:Chapter
50 N183787115fb24b0a8160534410e06e66 schema:isbn 978-3-319-19047-1
51 978-3-319-19048-8
52 schema:name Bioinformatics Research and Applications
53 rdf:type schema:Book
54 N227605c882344b37ad41d049b832586c rdf:first Ne7b7088f43e04716a006ac5ac6daa697
55 rdf:rest N7bc9748957c04672b74fe724e15d1f28
56 N233530f8278c4d339cd90de50e313b58 schema:name doi
57 schema:value 10.1007/978-3-319-19048-8_18
58 rdf:type schema:PropertyValue
59 N2fb7f2310a7f4f32ae199a69de5262ee schema:familyName Li
60 schema:givenName Yaohang
61 rdf:type schema:Person
62 N3052185108e44367810f655bd375abe4 schema:location Cham
63 schema:name Springer International Publishing
64 rdf:type schema:Organisation
65 N34871ff1c6c54dc494e22f0a9c1f39ab rdf:first N2fb7f2310a7f4f32ae199a69de5262ee
66 rdf:rest N9dbb5892c8504794830261460877c1d1
67 N4b072b2eaa124e3c8beca6f797abfe83 rdf:first N758a27a19c434c12afdedf3be2c7937d
68 rdf:rest N34871ff1c6c54dc494e22f0a9c1f39ab
69 N59c6469bbf4c49bfa8e87cfd94fcfb32 rdf:first sg:person.01275354546.73
70 rdf:rest Nb3a2efbb3cf546b49e649e4e31c6be18
71 N67a714c4e3fd41a2a5b6bf4895062a8e schema:name readcube_id
72 schema:value 1c849b62199c84e3ce72bd767f09c81d244526799a55968c6762d879c7456f3e
73 rdf:type schema:PropertyValue
74 N758a27a19c434c12afdedf3be2c7937d schema:familyName Harrison
75 schema:givenName Robert
76 rdf:type schema:Person
77 N78a6c26ab8ca462693799822c7387ffc rdf:first sg:person.010351235467.44
78 rdf:rest N9161e4aa13854e99877921c26f39718b
79 N7bc9748957c04672b74fe724e15d1f28 rdf:first Nd0f7e3d5977d4dd0b37185ce82be84e8
80 rdf:rest N8359e0b0644147a6add3ca1ed17e4f64
81 N8359e0b0644147a6add3ca1ed17e4f64 rdf:first sg:person.0745752441.12
82 rdf:rest N9cb19f62b066410c8959bd64bff59cc6
83 N9161e4aa13854e99877921c26f39718b rdf:first sg:person.01312526135.27
84 rdf:rest N59c6469bbf4c49bfa8e87cfd94fcfb32
85 N9cb19f62b066410c8959bd64bff59cc6 rdf:first sg:person.07456324600.70
86 rdf:rest Nf77fb8ca6a2349baa226100723f55515
87 N9dbb5892c8504794830261460877c1d1 rdf:first Nc8314d80bc484d6bbc3d0a859248cd98
88 rdf:rest rdf:nil
89 Nb3a2efbb3cf546b49e649e4e31c6be18 rdf:first sg:person.07731552573.20
90 rdf:rest rdf:nil
91 Nbec6b2d2364049ebb5a87a258bba38e0 schema:name dimensions_id
92 schema:value pub.1005986908
93 rdf:type schema:PropertyValue
94 Nc8314d80bc484d6bbc3d0a859248cd98 schema:familyName Măndoiu
95 schema:givenName Ion
96 rdf:type schema:Person
97 Nd0f7e3d5977d4dd0b37185ce82be84e8 schema:affiliation https://www.grid.ac/institutes/grid.38348.34
98 schema:familyName Cheng
99 schema:givenName Micheal
100 rdf:type schema:Person
101 Ne7b7088f43e04716a006ac5ac6daa697 schema:affiliation https://www.grid.ac/institutes/grid.194645.b
102 schema:familyName Li
103 schema:givenName Menglu
104 rdf:type schema:Person
105 Nee77927efe1d4824a8d69f3da37f156f schema:name Springer Nature - SN SciGraph project
106 rdf:type schema:Organization
107 Nf77fb8ca6a2349baa226100723f55515 rdf:first sg:person.01243611107.92
108 rdf:rest N78a6c26ab8ca462693799822c7387ffc
109 anzsrc-for:08 schema:inDefinedTermSet anzsrc-for:
110 schema:name Information and Computing Sciences
111 rdf:type schema:DefinedTerm
112 anzsrc-for:0806 schema:inDefinedTermSet anzsrc-for:
113 schema:name Information Systems
114 rdf:type schema:DefinedTerm
115 sg:person.010351235467.44 schema:affiliation https://www.grid.ac/institutes/grid.194645.b
116 schema:familyName Lam
117 schema:givenName Tw
118 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010351235467.44
119 rdf:type schema:Person
120 sg:person.01243611107.92 schema:affiliation https://www.grid.ac/institutes/grid.194645.b
121 schema:familyName Ting
122 schema:givenName Hf
123 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01243611107.92
124 rdf:type schema:Person
125 sg:person.01275354546.73 schema:affiliation https://www.grid.ac/institutes/grid.417653.2
126 schema:familyName Wong
127 schema:givenName Thomas
128 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01275354546.73
129 rdf:type schema:Person
130 sg:person.01312526135.27 schema:affiliation https://www.grid.ac/institutes/grid.38348.34
131 schema:familyName Tang
132 schema:givenName Cy
133 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01312526135.27
134 rdf:type schema:Person
135 sg:person.07456324600.70 schema:affiliation https://www.grid.ac/institutes/grid.38348.34
136 schema:familyName Hon
137 schema:givenName Wk
138 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07456324600.70
139 rdf:type schema:Person
140 sg:person.0745752441.12 schema:affiliation https://www.grid.ac/institutes/grid.194645.b
141 schema:familyName Ye
142 schema:givenName Yongtao
143 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0745752441.12
144 rdf:type schema:Person
145 sg:person.07731552573.20 schema:affiliation https://www.grid.ac/institutes/grid.194645.b
146 schema:familyName Yiu
147 schema:givenName Sm
148 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07731552573.20
149 rdf:type schema:Person
150 sg:pub.10.1007/978-3-540-27836-8_77 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040931510
151 https://doi.org/10.1007/978-3-540-27836-8_77
152 rdf:type schema:CreativeWork
153 sg:pub.10.1186/1471-2105-12-108 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000550509
154 https://doi.org/10.1186/1471-2105-12-108
155 rdf:type schema:CreativeWork
156 sg:pub.10.1186/1471-2105-9-33 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023306749
157 https://doi.org/10.1186/1471-2105-9-33
158 rdf:type schema:CreativeWork
159 sg:pub.10.1186/1471-2105-9-474 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041611297
160 https://doi.org/10.1186/1471-2105-9-474
161 rdf:type schema:CreativeWork
162 https://doi.org/10.1002/jcc.10296 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051970143
163 rdf:type schema:CreativeWork
164 https://doi.org/10.1002/jcc.21596 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007853236
165 rdf:type schema:CreativeWork
166 https://doi.org/10.1006/jmbi.1997.1092 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033436235
167 rdf:type schema:CreativeWork
168 https://doi.org/10.1006/jmbi.1998.2436 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030245324
169 rdf:type schema:CreativeWork
170 https://doi.org/10.1006/jmbi.2000.3668 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004795216
171 rdf:type schema:CreativeWork
172 https://doi.org/10.1016/0092-8674(89)90124-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042582426
173 rdf:type schema:CreativeWork
174 https://doi.org/10.1016/s0166-218x(00)00186-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017648794
175 rdf:type schema:CreativeWork
176 https://doi.org/10.1016/s0304-3975(98)00090-5 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026113255
177 rdf:type schema:CreativeWork
178 https://doi.org/10.1021/bi00162a001 schema:sameAs https://app.dimensions.ai/details/publication/pub.1055163272
179 rdf:type schema:CreativeWork
180 https://doi.org/10.1089/106652700750050862 schema:sameAs https://app.dimensions.ai/details/publication/pub.1059204856
181 rdf:type schema:CreativeWork
182 https://doi.org/10.1089/cmb.2008.0219 schema:sameAs https://app.dimensions.ai/details/publication/pub.1059245741
183 rdf:type schema:CreativeWork
184 https://doi.org/10.1089/cmb.2011.0184 schema:sameAs https://app.dimensions.ai/details/publication/pub.1059246064
185 rdf:type schema:CreativeWork
186 https://doi.org/10.1093/bioinformatics/btg1007 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020982524
187 rdf:type schema:CreativeWork
188 https://doi.org/10.1093/bioinformatics/btn601 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011898458
189 rdf:type schema:CreativeWork
190 https://doi.org/10.1093/bioinformatics/btr090 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049095163
191 rdf:type schema:CreativeWork
192 https://doi.org/10.1093/nar/gki081 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036286749
193 rdf:type schema:CreativeWork
194 https://doi.org/10.1093/nar/gkm258 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028222543
195 rdf:type schema:CreativeWork
196 https://doi.org/10.1093/nar/gkq432 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025601142
197 rdf:type schema:CreativeWork
198 https://doi.org/10.1261/rna.7284905 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030613163
199 rdf:type schema:CreativeWork
200 https://www.grid.ac/institutes/grid.194645.b schema:alternateName University of Hong Kong
201 schema:name Department of Computer Science, The University of Hong Kong, Hong Kong, China
202 rdf:type schema:Organization
203 https://www.grid.ac/institutes/grid.38348.34 schema:alternateName National Tsing Hua University
204 schema:name Department of Computer Science, National Tsinghua University, Hsinchu City, Taiwan
205 rdf:type schema:Organization
206 https://www.grid.ac/institutes/grid.417653.2 schema:alternateName Ecosystem Sciences
207 schema:name CSIRO Ecosystem Sciences, Canberra, Australia
208 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...