Detection of MicroRNA Processing Intermediates Through RNA Ligation Approaches. View Full Text


Ontology type: schema:Chapter     


Chapter Info

DATE

2019

AUTHORS

Belén Moro , Arantxa M L Rojas , Javier F Palatnik

ABSTRACT

MicroRNAs (miRNA) are small RNAs of 20-22 nt that regulate diverse biological pathways through the modulation of gene expression. miRNAs recognize target RNAs by base complementarity and guide them to degradation or translational arrest. They are transcribed as longer precursors with extensive secondary structures. In plants, these precursors are processed by a complex harboring DICER-LIKE1 (DCL1), which cuts on the precursor stem region to release the mature miRNA together with the miRNA*. In both plants and animals, the miRNA precursors contain spatial clues that determine the position of the miRNA along their sequences. DCL1 is assisted by several proteins, such as the double-stranded RNA binding protein, HYPONASTIC LEAVES1 (HYL1), and the zinc finger protein SERRATE (SE). The precise biogenesis of miRNAs is of utter importance since it determines the exact nucleotide sequence of the mature small RNAs and therefore the identity of the target genes. miRNA processing itself can be regulated and therefore can determine the final small RNA levels and activity. Here, we describe methods to analyze miRNA processing intermediates in plants. These approaches can be used in wild-type or mutant plants, as well as in plants grown under different conditions, allowing a molecular characterization of the miRNA biogenesis from the RNA precursor perspective. More... »

PAGES

261-283

References to SciGraph publications

  • 2014-08. Regulation of microRNA biogenesis in NATURE REVIEWS MOLECULAR CELL BIOLOGY
  • 2011-04. Vive la différence: biogenesis and evolution of microRNAs in plants and animals in GENOME BIOLOGY
  • Book

    TITLE

    Plant MicroRNAs

    ISBN

    978-1-4939-9041-2
    978-1-4939-9042-9

    Author Affiliations

    Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/978-1-4939-9042-9_20

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    http://dx.doi.org/10.1007/978-1-4939-9042-9_20

    DIMENSIONS

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    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/30701507


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