Laser Ablation Electrospray Ionization-Mass Spectrometry Imaging (LAESI-MS) for Spatially Resolved Plant Metabolomics View Full Text


Ontology type: schema:Chapter     


Chapter Info

DATE

2018-05-15

AUTHORS

Desalegn W. Etalo , Carmen Díez-Simón , Ric C. H. de Vos , Robert D. Hall

ABSTRACT

There is increasing demand to bring the level of metabolomics analyses down to the tissue or cell level. Significant progress has been made involving the use of in situ metabolomics imaging techniques where no tissue collection or extraction is needed prior to analysis. In this chapter we describe a relatively new method which is simple and easy to use. No ectopic matrix or vacuum is required, and analyses are performed with living plant materials directly from (or even still attached to) the plant. Although relatively straightforward, there are still a few caveats as regards this method which are described at the end of the chapter. More... »

PAGES

253-267

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/978-1-4939-7819-9_18

DOI

http://dx.doi.org/10.1007/978-1-4939-7819-9_18

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1103973019

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/29761444


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0607", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Plant Biology", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Metabolomics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Plants", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Spectrometry, Mass, Electrospray Ionization", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Netherlands Institute of Ecology, Wageningen, The Netherlands", 
          "id": "http://www.grid.ac/institutes/grid.418375.c", 
          "name": [
            "Netherlands Institute of Ecology, Wageningen, The Netherlands"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Etalo", 
        "givenName": "Desalegn W.", 
        "id": "sg:person.0727314017.29", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0727314017.29"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Laboratory of Plant Physiology, Wageningen University and Research, Wageningen, The Netherlands", 
          "id": "http://www.grid.ac/institutes/grid.4818.5", 
          "name": [
            "Laboratory of Plant Physiology, Wageningen University and Research, Wageningen, The Netherlands"
          ], 
          "type": "Organization"
        }, 
        "familyName": "D\u00edez-Sim\u00f3n", 
        "givenName": "Carmen", 
        "id": "sg:person.015523577152.89", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015523577152.89"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Netherlands Metabolomics Centre, Leiden, The Netherlands", 
          "id": "http://www.grid.ac/institutes/grid.450196.f", 
          "name": [
            "Business Unit Bioscience, Wageningen University and Research, Wageningen, The Netherlands", 
            "Netherlands Metabolomics Centre, Leiden, The Netherlands"
          ], 
          "type": "Organization"
        }, 
        "familyName": "de Vos", 
        "givenName": "Ric C. H.", 
        "id": "sg:person.014575024362.22", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014575024362.22"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Netherlands Metabolomics Centre, Leiden, The Netherlands", 
          "id": "http://www.grid.ac/institutes/grid.450196.f", 
          "name": [
            "Laboratory of Plant Physiology, Wageningen University and Research, Wageningen, The Netherlands", 
            "Business Unit Bioscience, Wageningen University and Research, Wageningen, The Netherlands", 
            "Netherlands Metabolomics Centre, Leiden, The Netherlands"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Hall", 
        "givenName": "Robert D.", 
        "id": "sg:person.0704576323.20", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0704576323.20"
        ], 
        "type": "Person"
      }
    ], 
    "datePublished": "2018-05-15", 
    "datePublishedReg": "2018-05-15", 
    "description": "There is increasing demand to bring the level of metabolomics analyses down to the tissue or cell level. Significant progress has been made involving the use of in situ metabolomics imaging techniques where no tissue collection or extraction is needed prior to analysis. In this chapter we describe a relatively new method which is simple and easy to use. No ectopic matrix or vacuum is required, and analyses are performed with living plant materials directly from (or even still attached to) the plant. Although relatively straightforward, there are still a few caveats as regards this method which are described at the end of the chapter.", 
    "editor": [
      {
        "familyName": "Ant\u00f3nio", 
        "givenName": "Carla", 
        "type": "Person"
      }
    ], 
    "genre": "chapter", 
    "id": "sg:pub.10.1007/978-1-4939-7819-9_18", 
    "inLanguage": "en", 
    "isAccessibleForFree": false, 
    "isPartOf": {
      "isbn": [
        "978-1-4939-7818-2", 
        "978-1-4939-7819-9"
      ], 
      "name": "Plant Metabolomics", 
      "type": "Book"
    }, 
    "keywords": [
      "plant metabolomics", 
      "ionization mass spectrometry imaging", 
      "plant material", 
      "spectrometry imaging", 
      "metabolomic analysis", 
      "cell level", 
      "plants", 
      "tissue collection", 
      "significant progress", 
      "metabolomics", 
      "tissue", 
      "levels", 
      "analysis", 
      "materials", 
      "new method", 
      "vacuum", 
      "extraction", 
      "method", 
      "matrix", 
      "chapter", 
      "caveats", 
      "progress", 
      "collection", 
      "Spatially", 
      "technique", 
      "end", 
      "imaging techniques", 
      "use", 
      "imaging", 
      "regard", 
      "demand"
    ], 
    "name": "Laser Ablation Electrospray Ionization-Mass Spectrometry Imaging (LAESI-MS) for Spatially Resolved Plant Metabolomics", 
    "pagination": "253-267", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1103973019"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/978-1-4939-7819-9_18"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "29761444"
        ]
      }
    ], 
    "publisher": {
      "name": "Springer Nature", 
      "type": "Organisation"
    }, 
    "sameAs": [
      "https://doi.org/10.1007/978-1-4939-7819-9_18", 
      "https://app.dimensions.ai/details/publication/pub.1103973019"
    ], 
    "sdDataset": "chapters", 
    "sdDatePublished": "2022-05-20T07:48", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20220519/entities/gbq_results/chapter/chapter_447.jsonl", 
    "type": "Chapter", 
    "url": "https://doi.org/10.1007/978-1-4939-7819-9_18"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/978-1-4939-7819-9_18'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/978-1-4939-7819-9_18'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/978-1-4939-7819-9_18'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/978-1-4939-7819-9_18'


 

This table displays all metadata directly associated to this object as RDF triples.

136 TRIPLES      23 PREDICATES      59 URIs      52 LITERALS      11 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/978-1-4939-7819-9_18 schema:about N6f5fbf7509084f4c833b20c75ef35feb
2 Nb728bb76f25e42199a8a229133568f4b
3 Ndd4ff25a24314c5e8ad3e7b0327930db
4 anzsrc-for:06
5 anzsrc-for:0607
6 schema:author Nae972d38937842cea64df3fb07549d3b
7 schema:datePublished 2018-05-15
8 schema:datePublishedReg 2018-05-15
9 schema:description There is increasing demand to bring the level of metabolomics analyses down to the tissue or cell level. Significant progress has been made involving the use of in situ metabolomics imaging techniques where no tissue collection or extraction is needed prior to analysis. In this chapter we describe a relatively new method which is simple and easy to use. No ectopic matrix or vacuum is required, and analyses are performed with living plant materials directly from (or even still attached to) the plant. Although relatively straightforward, there are still a few caveats as regards this method which are described at the end of the chapter.
10 schema:editor N703e2bfb499545acb615e4ec4fab457c
11 schema:genre chapter
12 schema:inLanguage en
13 schema:isAccessibleForFree false
14 schema:isPartOf Nc5acfbcf0fd048ed857e745a695670dc
15 schema:keywords Spatially
16 analysis
17 caveats
18 cell level
19 chapter
20 collection
21 demand
22 end
23 extraction
24 imaging
25 imaging techniques
26 ionization mass spectrometry imaging
27 levels
28 materials
29 matrix
30 metabolomic analysis
31 metabolomics
32 method
33 new method
34 plant material
35 plant metabolomics
36 plants
37 progress
38 regard
39 significant progress
40 spectrometry imaging
41 technique
42 tissue
43 tissue collection
44 use
45 vacuum
46 schema:name Laser Ablation Electrospray Ionization-Mass Spectrometry Imaging (LAESI-MS) for Spatially Resolved Plant Metabolomics
47 schema:pagination 253-267
48 schema:productId N9587ea0845784035b15d38a48b5bf7c4
49 Nb323713e9e7243b0a89a2f0b6c7c684b
50 Ndac0b94ffa2e422d99cd02e2952189a0
51 schema:publisher Ne6a091877c4b44dfb228838dab0e2a6a
52 schema:sameAs https://app.dimensions.ai/details/publication/pub.1103973019
53 https://doi.org/10.1007/978-1-4939-7819-9_18
54 schema:sdDatePublished 2022-05-20T07:48
55 schema:sdLicense https://scigraph.springernature.com/explorer/license/
56 schema:sdPublisher N2b8c3b3df61743a0a6ff12138e14c894
57 schema:url https://doi.org/10.1007/978-1-4939-7819-9_18
58 sgo:license sg:explorer/license/
59 sgo:sdDataset chapters
60 rdf:type schema:Chapter
61 N2b8c3b3df61743a0a6ff12138e14c894 schema:name Springer Nature - SN SciGraph project
62 rdf:type schema:Organization
63 N5848410254b34c45b88b41a659d0a14f rdf:first sg:person.015523577152.89
64 rdf:rest Nc10da468739b41c4ba9f7e49cae44197
65 N6f5fbf7509084f4c833b20c75ef35feb schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
66 schema:name Metabolomics
67 rdf:type schema:DefinedTerm
68 N703e2bfb499545acb615e4ec4fab457c rdf:first Ne153ecac7352499a95760c93c0fc750d
69 rdf:rest rdf:nil
70 N950db0c248d54eb6bb13285516eb51ab rdf:first sg:person.0704576323.20
71 rdf:rest rdf:nil
72 N9587ea0845784035b15d38a48b5bf7c4 schema:name pubmed_id
73 schema:value 29761444
74 rdf:type schema:PropertyValue
75 Nae972d38937842cea64df3fb07549d3b rdf:first sg:person.0727314017.29
76 rdf:rest N5848410254b34c45b88b41a659d0a14f
77 Nb323713e9e7243b0a89a2f0b6c7c684b schema:name dimensions_id
78 schema:value pub.1103973019
79 rdf:type schema:PropertyValue
80 Nb728bb76f25e42199a8a229133568f4b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
81 schema:name Plants
82 rdf:type schema:DefinedTerm
83 Nc10da468739b41c4ba9f7e49cae44197 rdf:first sg:person.014575024362.22
84 rdf:rest N950db0c248d54eb6bb13285516eb51ab
85 Nc5acfbcf0fd048ed857e745a695670dc schema:isbn 978-1-4939-7818-2
86 978-1-4939-7819-9
87 schema:name Plant Metabolomics
88 rdf:type schema:Book
89 Ndac0b94ffa2e422d99cd02e2952189a0 schema:name doi
90 schema:value 10.1007/978-1-4939-7819-9_18
91 rdf:type schema:PropertyValue
92 Ndd4ff25a24314c5e8ad3e7b0327930db schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
93 schema:name Spectrometry, Mass, Electrospray Ionization
94 rdf:type schema:DefinedTerm
95 Ne153ecac7352499a95760c93c0fc750d schema:familyName António
96 schema:givenName Carla
97 rdf:type schema:Person
98 Ne6a091877c4b44dfb228838dab0e2a6a schema:name Springer Nature
99 rdf:type schema:Organisation
100 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
101 schema:name Biological Sciences
102 rdf:type schema:DefinedTerm
103 anzsrc-for:0607 schema:inDefinedTermSet anzsrc-for:
104 schema:name Plant Biology
105 rdf:type schema:DefinedTerm
106 sg:person.014575024362.22 schema:affiliation grid-institutes:grid.450196.f
107 schema:familyName de Vos
108 schema:givenName Ric C. H.
109 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014575024362.22
110 rdf:type schema:Person
111 sg:person.015523577152.89 schema:affiliation grid-institutes:grid.4818.5
112 schema:familyName Díez-Simón
113 schema:givenName Carmen
114 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015523577152.89
115 rdf:type schema:Person
116 sg:person.0704576323.20 schema:affiliation grid-institutes:grid.450196.f
117 schema:familyName Hall
118 schema:givenName Robert D.
119 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0704576323.20
120 rdf:type schema:Person
121 sg:person.0727314017.29 schema:affiliation grid-institutes:grid.418375.c
122 schema:familyName Etalo
123 schema:givenName Desalegn W.
124 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0727314017.29
125 rdf:type schema:Person
126 grid-institutes:grid.418375.c schema:alternateName Netherlands Institute of Ecology, Wageningen, The Netherlands
127 schema:name Netherlands Institute of Ecology, Wageningen, The Netherlands
128 rdf:type schema:Organization
129 grid-institutes:grid.450196.f schema:alternateName Netherlands Metabolomics Centre, Leiden, The Netherlands
130 schema:name Business Unit Bioscience, Wageningen University and Research, Wageningen, The Netherlands
131 Laboratory of Plant Physiology, Wageningen University and Research, Wageningen, The Netherlands
132 Netherlands Metabolomics Centre, Leiden, The Netherlands
133 rdf:type schema:Organization
134 grid-institutes:grid.4818.5 schema:alternateName Laboratory of Plant Physiology, Wageningen University and Research, Wageningen, The Netherlands
135 schema:name Laboratory of Plant Physiology, Wageningen University and Research, Wageningen, The Netherlands
136 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...