Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center View Full Text


Ontology type: schema:Chapter     


Chapter Info

DATE

2017-12-26

AUTHORS

Alice R. Wattam , Thomas Brettin , James J. Davis , Svetlana Gerdes , Ronald Kenyon , Dustin Machi , Chunhong Mao , Robert Olson , Ross Overbeek , Gordon D. Pusch , Maulik P. Shukla , Rick Stevens , Veronika Vonstein , Andrew Warren , Fangfang Xia , Hyunseung Yoo

ABSTRACT

In the “big data” era, research biologists are faced with analyzing new types that usually require some level of computational expertise. A number of programs and pipelines exist, but acquiring the expertise to run them, and then understanding the output can be a challenge.The Pathosystems Resource Integration Center (PATRIC, www.patricbrc.org) has created an end-to-end analysis platform that allows researchers to take their raw reads, assemble a genome, annotate it, and then use a suite of user-friendly tools to compare it to any public data that is available in the repository. With close to 113,000 bacterial and more than 1000 archaeal genomes, PATRIC creates a unique research experience with “virtual integration” of private and public data. PATRIC contains many diverse tools and functionalities to explore both genome-scale and gene expression data, but the main focus of this chapter is on assembly, annotation, and the downstream comparative analysis functionality that is freely available in the resource. More... »

PAGES

79-101

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/978-1-4939-7463-4_4

DOI

http://dx.doi.org/10.1007/978-1-4939-7463-4_4

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1100059123

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/29277864


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Bacteria", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Computational Biology", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Databases, Genetic", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genome, Bacterial", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genomics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Internet", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Molecular Sequence Annotation", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Software", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Statistics as Topic", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Biocomplexity Institute, Virginia Tech, 1015 Life Science Circle, 24061, Blacksburg, VA, USA", 
          "id": "http://www.grid.ac/institutes/grid.438526.e", 
          "name": [
            "Biocomplexity Institute, Virginia Tech, 1015 Life Science Circle, 24061, Blacksburg, VA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Wattam", 
        "givenName": "Alice R.", 
        "id": "sg:person.0717705113.11", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0717705113.11"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA", 
          "id": "http://www.grid.ac/institutes/grid.187073.a", 
          "name": [
            "Computation Institute, University of Chicago, Chicago, IL, USA", 
            "Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Brettin", 
        "givenName": "Thomas", 
        "id": "sg:person.01265534462.01", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01265534462.01"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA", 
          "id": "http://www.grid.ac/institutes/grid.187073.a", 
          "name": [
            "Computation Institute, University of Chicago, Chicago, IL, USA", 
            "Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Davis", 
        "givenName": "James J.", 
        "id": "sg:person.01070627630.39", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01070627630.39"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Fellowship for Interpretation of Genomes, 60527, Burr Ridge, IL, USA", 
          "id": "http://www.grid.ac/institutes/None", 
          "name": [
            "Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA", 
            "Fellowship for Interpretation of Genomes, 60527, Burr Ridge, IL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Gerdes", 
        "givenName": "Svetlana", 
        "id": "sg:person.01204666003.39", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01204666003.39"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Biocomplexity Institute, Virginia Tech, 1015 Life Science Circle, 24061, Blacksburg, VA, USA", 
          "id": "http://www.grid.ac/institutes/grid.438526.e", 
          "name": [
            "Biocomplexity Institute, Virginia Tech, 1015 Life Science Circle, 24061, Blacksburg, VA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kenyon", 
        "givenName": "Ronald", 
        "id": "sg:person.01157713730.65", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01157713730.65"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Biocomplexity Institute, Virginia Tech, 1015 Life Science Circle, 24061, Blacksburg, VA, USA", 
          "id": "http://www.grid.ac/institutes/grid.438526.e", 
          "name": [
            "Biocomplexity Institute, Virginia Tech, 1015 Life Science Circle, 24061, Blacksburg, VA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Machi", 
        "givenName": "Dustin", 
        "id": "sg:person.01040007605.39", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01040007605.39"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Biocomplexity Institute, Virginia Tech, 1015 Life Science Circle, 24061, Blacksburg, VA, USA", 
          "id": "http://www.grid.ac/institutes/grid.438526.e", 
          "name": [
            "Biocomplexity Institute, Virginia Tech, 1015 Life Science Circle, 24061, Blacksburg, VA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Mao", 
        "givenName": "Chunhong", 
        "id": "sg:person.01360157316.64", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01360157316.64"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL, USA", 
          "id": "http://www.grid.ac/institutes/grid.187073.a", 
          "name": [
            "Computation Institute, University of Chicago, Chicago, IL, USA", 
            "Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Olson", 
        "givenName": "Robert", 
        "id": "sg:person.01021612334.04", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01021612334.04"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Fellowship for Interpretation of Genomes, 60527, Burr Ridge, IL, USA", 
          "id": "http://www.grid.ac/institutes/None", 
          "name": [
            "Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA", 
            "Fellowship for Interpretation of Genomes, 60527, Burr Ridge, IL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Overbeek", 
        "givenName": "Ross", 
        "id": "sg:person.01064013616.82", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01064013616.82"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Fellowship for Interpretation of Genomes, 60527, Burr Ridge, IL, USA", 
          "id": "http://www.grid.ac/institutes/None", 
          "name": [
            "Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA", 
            "Fellowship for Interpretation of Genomes, 60527, Burr Ridge, IL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Pusch", 
        "givenName": "Gordon D.", 
        "id": "sg:person.01321567715.08", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01321567715.08"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA", 
          "id": "http://www.grid.ac/institutes/grid.187073.a", 
          "name": [
            "Computation Institute, University of Chicago, Chicago, IL, USA", 
            "Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Shukla", 
        "givenName": "Maulik P.", 
        "id": "sg:person.0710506007.22", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0710506007.22"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Computer Science, University of Chicago, 60637, Chicago, IL, USA", 
          "id": "http://www.grid.ac/institutes/grid.170205.1", 
          "name": [
            "Computation Institute, University of Chicago, Chicago, IL, USA", 
            "Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA", 
            "Department of Computer Science, University of Chicago, 60637, Chicago, IL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Stevens", 
        "givenName": "Rick", 
        "id": "sg:person.0707416220.12", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0707416220.12"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Fellowship for Interpretation of Genomes, 60527, Burr Ridge, IL, USA", 
          "id": "http://www.grid.ac/institutes/None", 
          "name": [
            "Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA", 
            "Fellowship for Interpretation of Genomes, 60527, Burr Ridge, IL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Vonstein", 
        "givenName": "Veronika", 
        "id": "sg:person.0620552713.47", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0620552713.47"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Biocomplexity Institute, Virginia Tech, 1015 Life Science Circle, 24061, Blacksburg, VA, USA", 
          "id": "http://www.grid.ac/institutes/grid.438526.e", 
          "name": [
            "Biocomplexity Institute, Virginia Tech, 1015 Life Science Circle, 24061, Blacksburg, VA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Warren", 
        "givenName": "Andrew", 
        "id": "sg:person.01247067724.51", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01247067724.51"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL, USA", 
          "id": "http://www.grid.ac/institutes/grid.187073.a", 
          "name": [
            "Computation Institute, University of Chicago, Chicago, IL, USA", 
            "Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Xia", 
        "givenName": "Fangfang", 
        "id": "sg:person.01023644620.00", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01023644620.00"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA", 
          "id": "http://www.grid.ac/institutes/grid.187073.a", 
          "name": [
            "Computation Institute, University of Chicago, Chicago, IL, USA", 
            "Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Yoo", 
        "givenName": "Hyunseung", 
        "id": "sg:person.01357746623.29", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01357746623.29"
        ], 
        "type": "Person"
      }
    ], 
    "datePublished": "2017-12-26", 
    "datePublishedReg": "2017-12-26", 
    "description": "In the \u201cbig data\u201d era, research biologists are faced with analyzing new types that usually require some level of computational expertise. A number of programs and pipelines exist, but acquiring the expertise to run them, and then understanding the output can be a challenge.The Pathosystems Resource Integration Center (PATRIC, www.patricbrc.org) has created an end-to-end analysis platform that allows researchers to take their raw reads, assemble a genome, annotate it, and then use a suite of user-friendly tools to compare it to any public data that is available in the repository. With close to 113,000 bacterial and more than 1000 archaeal genomes, PATRIC creates a unique research experience with \u201cvirtual integration\u201d of private and public data. PATRIC contains many diverse tools and functionalities to explore both genome-scale and gene expression data, but the main focus of this chapter is on assembly, annotation, and the downstream comparative analysis functionality that is freely available in the resource.", 
    "editor": [
      {
        "familyName": "Setubal", 
        "givenName": "Jo\u00e3o C.", 
        "type": "Person"
      }, 
      {
        "familyName": "Stoye", 
        "givenName": "Jens", 
        "type": "Person"
      }, 
      {
        "familyName": "Stadler", 
        "givenName": "Peter F.", 
        "type": "Person"
      }
    ], 
    "genre": "chapter", 
    "id": "sg:pub.10.1007/978-1-4939-7463-4_4", 
    "inLanguage": "en", 
    "isAccessibleForFree": false, 
    "isPartOf": {
      "isbn": [
        "978-1-4939-7461-0", 
        "978-1-4939-7463-4"
      ], 
      "name": "Comparative Genomics", 
      "type": "Book"
    }, 
    "keywords": [
      "bacterial Bioinformatics Resource Center", 
      "public data", 
      "user-friendly tool", 
      "Bioinformatics Resource Center", 
      "analysis functionality", 
      "big data", 
      "computational expertise", 
      "virtual integration", 
      "unique research experience", 
      "analysis platform", 
      "diverse tools", 
      "Pathosystems Resource Integration Center", 
      "gene expression data", 
      "annotation", 
      "research biologists", 
      "functionality", 
      "PATRIC", 
      "number of programs", 
      "main focus", 
      "expression data", 
      "repository", 
      "tool", 
      "platform", 
      "Resource Center", 
      "expertise", 
      "pipeline", 
      "data", 
      "integration", 
      "new type", 
      "suite", 
      "resources", 
      "integration center", 
      "raw reads", 
      "challenges", 
      "researchers", 
      "biologists", 
      "output", 
      "reads", 
      "era", 
      "program", 
      "number", 
      "research experience", 
      "focus", 
      "experience", 
      "end", 
      "chapter", 
      "center", 
      "types", 
      "comparative genomics", 
      "genomics", 
      "archaeal genomes", 
      "assembly", 
      "levels", 
      "genome", 
      "Resource Integration Center", 
      "end analysis platform", 
      "downstream comparative analysis functionality", 
      "comparative analysis functionality"
    ], 
    "name": "Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center", 
    "pagination": "79-101", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1100059123"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/978-1-4939-7463-4_4"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "29277864"
        ]
      }
    ], 
    "publisher": {
      "name": "Springer Nature", 
      "type": "Organisation"
    }, 
    "sameAs": [
      "https://doi.org/10.1007/978-1-4939-7463-4_4", 
      "https://app.dimensions.ai/details/publication/pub.1100059123"
    ], 
    "sdDataset": "chapters", 
    "sdDatePublished": "2021-11-01T18:45", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20211101/entities/gbq_results/chapter/chapter_102.jsonl", 
    "type": "Chapter", 
    "url": "https://doi.org/10.1007/978-1-4939-7463-4_4"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/978-1-4939-7463-4_4'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/978-1-4939-7463-4_4'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/978-1-4939-7463-4_4'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/978-1-4939-7463-4_4'


 

This table displays all metadata directly associated to this object as RDF triples.

288 TRIPLES      23 PREDICATES      92 URIs      85 LITERALS      17 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/978-1-4939-7463-4_4 schema:about N3b43e4e99d504427958c56d36f471189
2 N4d021a1f3f894de69df107eaab1250e5
3 N530e70005fa641a68ef924b4167869cf
4 N54881e86e95f4d5b8f223937a1e0a45a
5 N6082114c21d9497aa27c2c63ff8ef1c3
6 N74a623f9dca9412b9eab449b985c6c10
7 Nbb8fb0f194be4efbb49e5ead0214c564
8 Ndfe71a36f17544ea8162c9cbb9b13861
9 Nef23c6712072497b9e988aee8b8cf2eb
10 anzsrc-for:06
11 anzsrc-for:0604
12 schema:author N81831cc7f09a4679a2b41c4f5cacaab9
13 schema:datePublished 2017-12-26
14 schema:datePublishedReg 2017-12-26
15 schema:description In the “big data” era, research biologists are faced with analyzing new types that usually require some level of computational expertise. A number of programs and pipelines exist, but acquiring the expertise to run them, and then understanding the output can be a challenge.The Pathosystems Resource Integration Center (PATRIC, www.patricbrc.org) has created an end-to-end analysis platform that allows researchers to take their raw reads, assemble a genome, annotate it, and then use a suite of user-friendly tools to compare it to any public data that is available in the repository. With close to 113,000 bacterial and more than 1000 archaeal genomes, PATRIC creates a unique research experience with “virtual integration” of private and public data. PATRIC contains many diverse tools and functionalities to explore both genome-scale and gene expression data, but the main focus of this chapter is on assembly, annotation, and the downstream comparative analysis functionality that is freely available in the resource.
16 schema:editor Ne9d0f6624e464dff93cade180006b598
17 schema:genre chapter
18 schema:inLanguage en
19 schema:isAccessibleForFree false
20 schema:isPartOf N132959df853b4fecb99199d69cfd0067
21 schema:keywords Bioinformatics Resource Center
22 PATRIC
23 Pathosystems Resource Integration Center
24 Resource Center
25 Resource Integration Center
26 analysis functionality
27 analysis platform
28 annotation
29 archaeal genomes
30 assembly
31 bacterial Bioinformatics Resource Center
32 big data
33 biologists
34 center
35 challenges
36 chapter
37 comparative analysis functionality
38 comparative genomics
39 computational expertise
40 data
41 diverse tools
42 downstream comparative analysis functionality
43 end
44 end analysis platform
45 era
46 experience
47 expertise
48 expression data
49 focus
50 functionality
51 gene expression data
52 genome
53 genomics
54 integration
55 integration center
56 levels
57 main focus
58 new type
59 number
60 number of programs
61 output
62 pipeline
63 platform
64 program
65 public data
66 raw reads
67 reads
68 repository
69 research biologists
70 research experience
71 researchers
72 resources
73 suite
74 tool
75 types
76 unique research experience
77 user-friendly tool
78 virtual integration
79 schema:name Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center
80 schema:pagination 79-101
81 schema:productId N1639444a33604c6b8f1badba55a95666
82 N1e47a6c2cbeb44a5a896db813f7a08ae
83 Ne0c96c814230466c86cc83cd3ccf54b0
84 schema:publisher N29dc3215808e41baa891ce2859fd2039
85 schema:sameAs https://app.dimensions.ai/details/publication/pub.1100059123
86 https://doi.org/10.1007/978-1-4939-7463-4_4
87 schema:sdDatePublished 2021-11-01T18:45
88 schema:sdLicense https://scigraph.springernature.com/explorer/license/
89 schema:sdPublisher N2776220105cb4feba9323f28646403fd
90 schema:url https://doi.org/10.1007/978-1-4939-7463-4_4
91 sgo:license sg:explorer/license/
92 sgo:sdDataset chapters
93 rdf:type schema:Chapter
94 N0cbb2348f4a8482a8962b54ba8e78a45 rdf:first sg:person.01021612334.04
95 rdf:rest N6f17360697bd4752b7fcab61639803da
96 N0ed01a93f7cf45099e5d781cd2b5063c rdf:first sg:person.01360157316.64
97 rdf:rest N0cbb2348f4a8482a8962b54ba8e78a45
98 N0ee951bd88d545a789392ba4f27eaaa0 rdf:first N6b345bf0f23a49a5b2baf0ee431cd324
99 rdf:rest rdf:nil
100 N1113b106278e47d8a5ed21a2e40ac187 rdf:first sg:person.0707416220.12
101 rdf:rest N6b864e9c04eb4935af737c60ddd3b681
102 N132959df853b4fecb99199d69cfd0067 schema:isbn 978-1-4939-7461-0
103 978-1-4939-7463-4
104 schema:name Comparative Genomics
105 rdf:type schema:Book
106 N1639444a33604c6b8f1badba55a95666 schema:name doi
107 schema:value 10.1007/978-1-4939-7463-4_4
108 rdf:type schema:PropertyValue
109 N1e47a6c2cbeb44a5a896db813f7a08ae schema:name pubmed_id
110 schema:value 29277864
111 rdf:type schema:PropertyValue
112 N2776220105cb4feba9323f28646403fd schema:name Springer Nature - SN SciGraph project
113 rdf:type schema:Organization
114 N29dc3215808e41baa891ce2859fd2039 schema:name Springer Nature
115 rdf:type schema:Organisation
116 N2cf5009510e740bfa15fe9fe8a4c5cfb schema:familyName Stoye
117 schema:givenName Jens
118 rdf:type schema:Person
119 N3b43e4e99d504427958c56d36f471189 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
120 schema:name Genome, Bacterial
121 rdf:type schema:DefinedTerm
122 N46c96b49d3f14ad5b7e9b8c510311559 schema:familyName Setubal
123 schema:givenName João C.
124 rdf:type schema:Person
125 N4d021a1f3f894de69df107eaab1250e5 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
126 schema:name Computational Biology
127 rdf:type schema:DefinedTerm
128 N530e70005fa641a68ef924b4167869cf schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
129 schema:name Genomics
130 rdf:type schema:DefinedTerm
131 N5460fdbbdfcf4e1f9dbe321642151e0a rdf:first sg:person.01157713730.65
132 rdf:rest Na843ba8c681a463191d235e833ee4c83
133 N54881e86e95f4d5b8f223937a1e0a45a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
134 schema:name Molecular Sequence Annotation
135 rdf:type schema:DefinedTerm
136 N6082114c21d9497aa27c2c63ff8ef1c3 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
137 schema:name Databases, Genetic
138 rdf:type schema:DefinedTerm
139 N6b345bf0f23a49a5b2baf0ee431cd324 schema:familyName Stadler
140 schema:givenName Peter F.
141 rdf:type schema:Person
142 N6b864e9c04eb4935af737c60ddd3b681 rdf:first sg:person.0620552713.47
143 rdf:rest Nee87fda5295a4f2c8f0f6ad546659a37
144 N6d34e4ed366a4a5e94cb5ea3678e53c3 rdf:first N2cf5009510e740bfa15fe9fe8a4c5cfb
145 rdf:rest N0ee951bd88d545a789392ba4f27eaaa0
146 N6f17360697bd4752b7fcab61639803da rdf:first sg:person.01064013616.82
147 rdf:rest N78fe7fb9517d49e9800e71a631103573
148 N74a623f9dca9412b9eab449b985c6c10 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
149 schema:name Statistics as Topic
150 rdf:type schema:DefinedTerm
151 N78fe7fb9517d49e9800e71a631103573 rdf:first sg:person.01321567715.08
152 rdf:rest N875567cfa0294620a62be30c4bdde956
153 N81831cc7f09a4679a2b41c4f5cacaab9 rdf:first sg:person.0717705113.11
154 rdf:rest Na66c262f9fee43d5b036d7531562399b
155 N84324fa6a6d04ebbb5737f09666ac048 rdf:first sg:person.01357746623.29
156 rdf:rest rdf:nil
157 N875567cfa0294620a62be30c4bdde956 rdf:first sg:person.0710506007.22
158 rdf:rest N1113b106278e47d8a5ed21a2e40ac187
159 Na5443e145f4c4d2299fdd1b0410eca9b rdf:first sg:person.01070627630.39
160 rdf:rest Nc196183275794467af25be9c4f98b470
161 Na66c262f9fee43d5b036d7531562399b rdf:first sg:person.01265534462.01
162 rdf:rest Na5443e145f4c4d2299fdd1b0410eca9b
163 Na843ba8c681a463191d235e833ee4c83 rdf:first sg:person.01040007605.39
164 rdf:rest N0ed01a93f7cf45099e5d781cd2b5063c
165 Nb10b81d64da54112987043022cbfdf73 rdf:first sg:person.01023644620.00
166 rdf:rest N84324fa6a6d04ebbb5737f09666ac048
167 Nbb8fb0f194be4efbb49e5ead0214c564 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
168 schema:name Internet
169 rdf:type schema:DefinedTerm
170 Nc196183275794467af25be9c4f98b470 rdf:first sg:person.01204666003.39
171 rdf:rest N5460fdbbdfcf4e1f9dbe321642151e0a
172 Ndfe71a36f17544ea8162c9cbb9b13861 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
173 schema:name Bacteria
174 rdf:type schema:DefinedTerm
175 Ne0c96c814230466c86cc83cd3ccf54b0 schema:name dimensions_id
176 schema:value pub.1100059123
177 rdf:type schema:PropertyValue
178 Ne9d0f6624e464dff93cade180006b598 rdf:first N46c96b49d3f14ad5b7e9b8c510311559
179 rdf:rest N6d34e4ed366a4a5e94cb5ea3678e53c3
180 Nee87fda5295a4f2c8f0f6ad546659a37 rdf:first sg:person.01247067724.51
181 rdf:rest Nb10b81d64da54112987043022cbfdf73
182 Nef23c6712072497b9e988aee8b8cf2eb schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
183 schema:name Software
184 rdf:type schema:DefinedTerm
185 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
186 schema:name Biological Sciences
187 rdf:type schema:DefinedTerm
188 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
189 schema:name Genetics
190 rdf:type schema:DefinedTerm
191 sg:person.01021612334.04 schema:affiliation grid-institutes:grid.187073.a
192 schema:familyName Olson
193 schema:givenName Robert
194 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01021612334.04
195 rdf:type schema:Person
196 sg:person.01023644620.00 schema:affiliation grid-institutes:grid.187073.a
197 schema:familyName Xia
198 schema:givenName Fangfang
199 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01023644620.00
200 rdf:type schema:Person
201 sg:person.01040007605.39 schema:affiliation grid-institutes:grid.438526.e
202 schema:familyName Machi
203 schema:givenName Dustin
204 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01040007605.39
205 rdf:type schema:Person
206 sg:person.01064013616.82 schema:affiliation grid-institutes:None
207 schema:familyName Overbeek
208 schema:givenName Ross
209 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01064013616.82
210 rdf:type schema:Person
211 sg:person.01070627630.39 schema:affiliation grid-institutes:grid.187073.a
212 schema:familyName Davis
213 schema:givenName James J.
214 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01070627630.39
215 rdf:type schema:Person
216 sg:person.01157713730.65 schema:affiliation grid-institutes:grid.438526.e
217 schema:familyName Kenyon
218 schema:givenName Ronald
219 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01157713730.65
220 rdf:type schema:Person
221 sg:person.01204666003.39 schema:affiliation grid-institutes:None
222 schema:familyName Gerdes
223 schema:givenName Svetlana
224 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01204666003.39
225 rdf:type schema:Person
226 sg:person.01247067724.51 schema:affiliation grid-institutes:grid.438526.e
227 schema:familyName Warren
228 schema:givenName Andrew
229 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01247067724.51
230 rdf:type schema:Person
231 sg:person.01265534462.01 schema:affiliation grid-institutes:grid.187073.a
232 schema:familyName Brettin
233 schema:givenName Thomas
234 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01265534462.01
235 rdf:type schema:Person
236 sg:person.01321567715.08 schema:affiliation grid-institutes:None
237 schema:familyName Pusch
238 schema:givenName Gordon D.
239 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01321567715.08
240 rdf:type schema:Person
241 sg:person.01357746623.29 schema:affiliation grid-institutes:grid.187073.a
242 schema:familyName Yoo
243 schema:givenName Hyunseung
244 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01357746623.29
245 rdf:type schema:Person
246 sg:person.01360157316.64 schema:affiliation grid-institutes:grid.438526.e
247 schema:familyName Mao
248 schema:givenName Chunhong
249 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01360157316.64
250 rdf:type schema:Person
251 sg:person.0620552713.47 schema:affiliation grid-institutes:None
252 schema:familyName Vonstein
253 schema:givenName Veronika
254 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0620552713.47
255 rdf:type schema:Person
256 sg:person.0707416220.12 schema:affiliation grid-institutes:grid.170205.1
257 schema:familyName Stevens
258 schema:givenName Rick
259 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0707416220.12
260 rdf:type schema:Person
261 sg:person.0710506007.22 schema:affiliation grid-institutes:grid.187073.a
262 schema:familyName Shukla
263 schema:givenName Maulik P.
264 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0710506007.22
265 rdf:type schema:Person
266 sg:person.0717705113.11 schema:affiliation grid-institutes:grid.438526.e
267 schema:familyName Wattam
268 schema:givenName Alice R.
269 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0717705113.11
270 rdf:type schema:Person
271 grid-institutes:None schema:alternateName Fellowship for Interpretation of Genomes, 60527, Burr Ridge, IL, USA
272 schema:name Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA
273 Fellowship for Interpretation of Genomes, 60527, Burr Ridge, IL, USA
274 rdf:type schema:Organization
275 grid-institutes:grid.170205.1 schema:alternateName Department of Computer Science, University of Chicago, 60637, Chicago, IL, USA
276 schema:name Computation Institute, University of Chicago, Chicago, IL, USA
277 Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA
278 Department of Computer Science, University of Chicago, 60637, Chicago, IL, USA
279 rdf:type schema:Organization
280 grid-institutes:grid.187073.a schema:alternateName Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA
281 Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL, USA
282 schema:name Computation Institute, University of Chicago, Chicago, IL, USA
283 Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA
284 Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL, USA
285 rdf:type schema:Organization
286 grid-institutes:grid.438526.e schema:alternateName Biocomplexity Institute, Virginia Tech, 1015 Life Science Circle, 24061, Blacksburg, VA, USA
287 schema:name Biocomplexity Institute, Virginia Tech, 1015 Life Science Circle, 24061, Blacksburg, VA, USA
288 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...