Databases and Associated Tools for Glycomics and Glycoproteomics View Full Text


Ontology type: schema:Chapter     


Chapter Info

DATE

2017

AUTHORS

Frederique Lisacek , Julien Mariethoz , Davide Alocci , Pauline M. Rudd , Jodie L. Abrahams , Matthew P. Campbell , Nicolle H. Packer , Jonas Ståhle , Göran Widmalm , Elaine Mullen , Barbara Adamczyk , Miguel A. Rojas-Macias , Chunsheng Jin , Niclas G. Karlsson

ABSTRACT

The access to biodatabases for glycomics and glycoproteomics has proven to be essential for current glycobiological research. This chapter presents available databases that are devoted to different aspects of glycobioinformatics. This includes oligosaccharide sequence databases, experimental databases, 3D structure databases (of both glycans and glycorelated proteins) and association of glycans with tissue, disease, and proteins. Specific search protocols are also provided using tools associated with experimental databases for converting primary glycoanalytical data to glycan structural information. In particular, researchers using glycoanalysis methods by U/HPLC (GlycoBase), MS (GlycoWorkbench, UniCarb-DB, GlycoDigest), and NMR (CASPER) will benefit from this chapter. In addition we also include information on how to utilize glycan structural information to query databases that associate glycans with proteins (UniCarbKB) and with interactions with pathogens (SugarBind). More... »

PAGES

235-264

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/978-1-4939-6493-2_18

DOI

http://dx.doi.org/10.1007/978-1-4939-6493-2_18

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1019492300

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/27743371


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